Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|1005
Gene name
LocationContig_1208:1892..2981
Strand-
Gene length (bp)1089
Transcript length (bp)1089
Coding sequence length (bp)1089
Protein length (aa) 363

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00415 RCC1 Regulator of chromosome condensation (RCC1) repeat 1.5E-12 3 53
PF13540 RCC1_2 Regulator of chromosome condensation (RCC1) repeat 1.0E-05 290 315

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O42645|YF94_SCHPO RCC1 repeat-containing protein C10F6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC10F6.04 PE=3 SV=1 4 362 1.0E-31
sp|Q9UGK8|SRGEF_HUMAN Secretion-regulating guanine nucleotide exchange factor OS=Homo sapiens GN=SERGEF PE=1 SV=2 10 322 2.0E-20
sp|P31386|ATS1_YEAST Protein ATS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATS1 PE=1 SV=2 1 359 5.0E-18
sp|Q80YD6|SRGEF_MOUSE Secretion-regulating guanine nucleotide exchange factor OS=Mus musculus GN=Sergef PE=2 SV=2 4 322 4.0E-17
sp|Q3MHW0|SRGEF_BOVIN Secretion-regulating guanine nucleotide exchange factor OS=Bos taurus GN=SERGEF PE=2 SV=1 3 322 4.0E-16
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Swissprot ID Swissprot Description Start End E-value
sp|O42645|YF94_SCHPO RCC1 repeat-containing protein C10F6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC10F6.04 PE=3 SV=1 4 362 1.0E-31
sp|Q9UGK8|SRGEF_HUMAN Secretion-regulating guanine nucleotide exchange factor OS=Homo sapiens GN=SERGEF PE=1 SV=2 10 322 2.0E-20
sp|P31386|ATS1_YEAST Protein ATS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATS1 PE=1 SV=2 1 359 5.0E-18
sp|Q80YD6|SRGEF_MOUSE Secretion-regulating guanine nucleotide exchange factor OS=Mus musculus GN=Sergef PE=2 SV=2 4 322 4.0E-17
sp|Q3MHW0|SRGEF_BOVIN Secretion-regulating guanine nucleotide exchange factor OS=Bos taurus GN=SERGEF PE=2 SV=1 3 322 4.0E-16
sp|Q9R0X5|RPGR_MOUSE X-linked retinitis pigmentosa GTPase regulator OS=Mus musculus GN=Rpgr PE=1 SV=2 4 203 1.0E-10
sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 4 188 7.0E-10
sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 4 318 9.0E-10
sp|Q9R0X5|RPGR_MOUSE X-linked retinitis pigmentosa GTPase regulator OS=Mus musculus GN=Rpgr PE=1 SV=2 2 212 4.0E-09
sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 3 318 4.0E-09
sp|Q52KW8|RCC2_XENLA Protein RCC2 homolog OS=Xenopus laevis GN=rcc2 PE=2 SV=1 4 189 7.0E-09
sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 151 318 9.0E-09
sp|Q92834|RPGR_HUMAN X-linked retinitis pigmentosa GTPase regulator OS=Homo sapiens GN=RPGR PE=1 SV=2 4 203 1.0E-08
sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 8 318 1.0E-08
sp|Q9P258|RCC2_HUMAN Protein RCC2 OS=Homo sapiens GN=RCC2 PE=1 SV=2 4 170 2.0E-08
sp|P21827|RCC1_YEAST Guanine nucleotide exchange factor SRM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRM1 PE=1 SV=1 4 313 2.0E-08
sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 4 211 4.0E-08
sp|Q8BK67|RCC2_MOUSE Protein RCC2 OS=Mus musculus GN=Rcc2 PE=1 SV=1 4 170 5.0E-08
sp|Q6NYE2|RCC2_DANRE Protein RCC2 homolog OS=Danio rerio GN=rcc2 PE=2 SV=1 4 170 1.0E-07
sp|Q9N1T2|RPGR_CANLF X-linked retinitis pigmentosa GTPase regulator OS=Canis lupus familiaris GN=RPGR PE=2 SV=1 4 203 3.0E-07
sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 40 324 6.0E-07
sp|Q54VW7|GACGG_DICDI Rho GTPase-activating protein gacGG OS=Dictyostelium discoideum GN=gacGG PE=3 SV=1 21 322 1.0E-06
sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 3 318 1.0E-06
sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 3 318 2.0E-06
sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 4 232 3.0E-06
sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 4 318 4.0E-06
sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 4 318 4.0E-06
sp|Q8BK67|RCC2_MOUSE Protein RCC2 OS=Mus musculus GN=Rcc2 PE=1 SV=1 3 193 5.0E-06
sp|Q9UII4|HERC5_HUMAN E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2 4 135 7.0E-06
sp|Q9N1T2|RPGR_CANLF X-linked retinitis pigmentosa GTPase regulator OS=Canis lupus familiaris GN=RPGR PE=2 SV=1 2 212 7.0E-06
sp|Q92834|RPGR_HUMAN X-linked retinitis pigmentosa GTPase regulator OS=Homo sapiens GN=RPGR PE=1 SV=2 2 222 1.0E-05
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.8169 0.7954 0.0616 0.0418 0.1587 0.0157 0.0517 0.0715 0.0983 0.0062

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup4763
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|4509
Ophiocordyceps australis map64 (Brazil) OphauB2|3352
Ophiocordyceps camponoti-floridani Ophcf2|01760
Ophiocordyceps camponoti-rufipedis Ophun1|998
Ophiocordyceps kimflemingae Ophio5|4961
Ophiocordyceps subramaniannii Hirsu2|1005 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|1005
MHAIFSIGSNGSGQLGIGHTEDVSVPKQVQFRPSTPSEPIIQVAAGGNHTLLLTESGLLYWSGDPASGACGLATQ
PDVPLFQELLLGKDGEPPAVHIDSIAATWEASFALVRDGQGRKTKLFSFGLGAKGELASGELMVRTPAVTVVNHF
PPAGTEIVCLTACMGHVVAVLSSGDAYGWGNCRKLQIGHPAAVVTSPRKIDGIGFKVARAVCTMESTCFFGEPES
GNICVLGSDKWALCSNAPAKAPAWADVGAGWGSIYILCRDGSLRAWGRDDHGQLPPQNLPPLKRMAVGSEHVVAL
AEDGDVLSWGWGEHGNCGPKVEQGDVKGRWNVIASARFMPPSCQIYGIGAGCATSWVYIKSG*
Coding >Hirsu2|1005
ATGCATGCCATCTTCTCCATCGGGTCCAACGGATCCGGACAGTTGGGCATCGGTCACACAGAAGACGTCTCTGTA
CCAAAGCAGGTGCAGTTCCGTCCGAGCACGCCATCAGAGCCCATCATCCAGGTTGCCGCGGGAGGAAACCATACA
CTTCTGCTGACCGAGTCTGGTCTTCTCTATTGGAGCGGCGATCCGGCTAGTGGGGCTTGTGGGCTGGCCACGCAG
CCTGATGTGCCGTTGTTCCAGGAGCTTCTCTTAGGCAAGGACGGCGAGCCACCGGCAGTACACATCGACTCCATA
GCAGCAACCTGGGAGGCTTCATTCGCCCTTGTTCGGGATGGACAGGGTAGAAAGACTAAACTCTTCAGCTTTGGA
CTGGGTGCCAAAGGCGAGCTGGCGTCCGGAGAGCTCATGGTGCGCACGCCAGCTGTGACGGTAGTCAACCACTTC
CCTCCCGCAGGCACCGAGATCGTGTGTCTGACTGCCTGCATGGGACATGTTGTGGCTGTCTTGAGTAGCGGTGAT
GCATACGGCTGGGGAAACTGCCGCAAATTACAAATCGGGCATCCTGCGGCTGTCGTCACTTCACCGCGCAAGATT
GATGGCATCGGCTTCAAAGTCGCCCGGGCGGTCTGCACAATGGAGTCCACCTGTTTCTTCGGTGAGCCCGAGAGC
GGAAACATTTGCGTCCTAGGCTCGGACAAATGGGCGCTGTGTTCCAACGCTCCCGCCAAGGCCCCTGCGTGGGCC
GACGTCGGAGCCGGCTGGGGCAGCATCTATATCTTATGTCGGGATGGTTCTCTTCGGGCTTGGGGCCGCGACGAC
CATGGCCAGCTGCCGCCTCAGAACCTCCCACCGCTGAAAAGGATGGCCGTTGGCAGCGAACACGTGGTTGCGCTT
GCCGAGGACGGCGATGTCTTATCTTGGGGATGGGGCGAGCATGGCAACTGCGGCCCAAAAGTTGAGCAAGGCGAT
GTCAAAGGCCGCTGGAACGTCATTGCCTCGGCGCGATTTATGCCTCCAAGCTGTCAGATATACGGCATAGGTGCA
GGATGTGCCACCAGCTGGGTCTACATCAAGAGCGGCTGA
Transcript >Hirsu2|1005
ATGCATGCCATCTTCTCCATCGGGTCCAACGGATCCGGACAGTTGGGCATCGGTCACACAGAAGACGTCTCTGTA
CCAAAGCAGGTGCAGTTCCGTCCGAGCACGCCATCAGAGCCCATCATCCAGGTTGCCGCGGGAGGAAACCATACA
CTTCTGCTGACCGAGTCTGGTCTTCTCTATTGGAGCGGCGATCCGGCTAGTGGGGCTTGTGGGCTGGCCACGCAG
CCTGATGTGCCGTTGTTCCAGGAGCTTCTCTTAGGCAAGGACGGCGAGCCACCGGCAGTACACATCGACTCCATA
GCAGCAACCTGGGAGGCTTCATTCGCCCTTGTTCGGGATGGACAGGGTAGAAAGACTAAACTCTTCAGCTTTGGA
CTGGGTGCCAAAGGCGAGCTGGCGTCCGGAGAGCTCATGGTGCGCACGCCAGCTGTGACGGTAGTCAACCACTTC
CCTCCCGCAGGCACCGAGATCGTGTGTCTGACTGCCTGCATGGGACATGTTGTGGCTGTCTTGAGTAGCGGTGAT
GCATACGGCTGGGGAAACTGCCGCAAATTACAAATCGGGCATCCTGCGGCTGTCGTCACTTCACCGCGCAAGATT
GATGGCATCGGCTTCAAAGTCGCCCGGGCGGTCTGCACAATGGAGTCCACCTGTTTCTTCGGTGAGCCCGAGAGC
GGAAACATTTGCGTCCTAGGCTCGGACAAATGGGCGCTGTGTTCCAACGCTCCCGCCAAGGCCCCTGCGTGGGCC
GACGTCGGAGCCGGCTGGGGCAGCATCTATATCTTATGTCGGGATGGTTCTCTTCGGGCTTGGGGCCGCGACGAC
CATGGCCAGCTGCCGCCTCAGAACCTCCCACCGCTGAAAAGGATGGCCGTTGGCAGCGAACACGTGGTTGCGCTT
GCCGAGGACGGCGATGTCTTATCTTGGGGATGGGGCGAGCATGGCAACTGCGGCCCAAAAGTTGAGCAAGGCGAT
GTCAAAGGCCGCTGGAACGTCATTGCCTCGGCGCGATTTATGCCTCCAAGCTGTCAGATATACGGCATAGGTGCA
GGATGTGCCACCAGCTGGGTCTACATCAAGAGCGGCTGA
Gene >Hirsu2|1005
ATGCATGCCATCTTCTCCATCGGGTCCAACGGATCCGGACAGTTGGGCATCGGTCACACAGAAGACGTCTCTGTA
CCAAAGCAGGTGCAGTTCCGTCCGAGCACGCCATCAGAGCCCATCATCCAGGTTGCCGCGGGAGGAAACCATACA
CTTCTGCTGACCGAGTCTGGTCTTCTCTATTGGAGCGGCGATCCGGCTAGTGGGGCTTGTGGGCTGGCCACGCAG
CCTGATGTGCCGTTGTTCCAGGAGCTTCTCTTAGGCAAGGACGGCGAGCCACCGGCAGTACACATCGACTCCATA
GCAGCAACCTGGGAGGCTTCATTCGCCCTTGTTCGGGATGGACAGGGTAGAAAGACTAAACTCTTCAGCTTTGGA
CTGGGTGCCAAAGGCGAGCTGGCGTCCGGAGAGCTCATGGTGCGCACGCCAGCTGTGACGGTAGTCAACCACTTC
CCTCCCGCAGGCACCGAGATCGTGTGTCTGACTGCCTGCATGGGACATGTTGTGGCTGTCTTGAGTAGCGGTGAT
GCATACGGCTGGGGAAACTGCCGCAAATTACAAATCGGGCATCCTGCGGCTGTCGTCACTTCACCGCGCAAGATT
GATGGCATCGGCTTCAAAGTCGCCCGGGCGGTCTGCACAATGGAGTCCACCTGTTTCTTCGGTGAGCCCGAGAGC
GGAAACATTTGCGTCCTAGGCTCGGACAAATGGGCGCTGTGTTCCAACGCTCCCGCCAAGGCCCCTGCGTGGGCC
GACGTCGGAGCCGGCTGGGGCAGCATCTATATCTTATGTCGGGATGGTTCTCTTCGGGCTTGGGGCCGCGACGAC
CATGGCCAGCTGCCGCCTCAGAACCTCCCACCGCTGAAAAGGATGGCCGTTGGCAGCGAACACGTGGTTGCGCTT
GCCGAGGACGGCGATGTCTTATCTTGGGGATGGGGCGAGCATGGCAACTGCGGCCCAAAAGTTGAGCAAGGCGAT
GTCAAAGGCCGCTGGAACGTCATTGCCTCGGCGCGATTTATGCCTCCAAGCTGTCAGATATACGGCATAGGTGCA
GGATGTGCCACCAGCTGGGTCTACATCAAGAGCGGCTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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