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| Protein ID | Hirsu2|1004 |
| Gene name | |
| Location | Contig_1208:195..681 |
| Strand | + |
| Gene length (bp) | 486 |
| Transcript length (bp) | 318 |
| Coding sequence length (bp) | 318 |
| Protein length (aa) | 106 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04139 | Rad9 | Rad9 | 3.3E-15 | 19 | 95 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Z0F6|RAD9A_MOUSE | Cell cycle checkpoint control protein RAD9A OS=Mus musculus GN=Rad9a PE=1 SV=1 | 19 | 92 | 7.0E-09 |
| sp|Q4R5X9|RAD9A_MACFA | Cell cycle checkpoint control protein RAD9A OS=Macaca fascicularis GN=RAD9A PE=2 SV=1 | 19 | 92 | 1.0E-07 |
| sp|Q99638|RAD9A_HUMAN | Cell cycle checkpoint control protein RAD9A OS=Homo sapiens GN=RAD9A PE=1 SV=1 | 19 | 92 | 1.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030896 | checkpoint clamp complex | Yes |
| GO:0000077 | DNA damage checkpoint signaling | Yes |
| GO:0050896 | response to stimulus | No |
| GO:1901988 | negative regulation of cell cycle phase transition | No |
| GO:0008150 | biological_process | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0007165 | signal transduction | No |
| GO:0045786 | negative regulation of cell cycle | No |
| GO:0006950 | response to stress | No |
| GO:0050794 | regulation of cellular process | No |
| GO:1901987 | regulation of cell cycle phase transition | No |
| GO:0010948 | negative regulation of cell cycle process | No |
| GO:0010564 | regulation of cell cycle process | No |
| GO:0009987 | cellular process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0000075 | cell cycle checkpoint signaling | No |
| GO:0033554 | cellular response to stress | No |
| GO:0048519 | negative regulation of biological process | No |
| GO:0042770 | signal transduction in response to DNA damage | No |
| GO:0065007 | biological regulation | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0051726 | regulation of cell cycle | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0035556 | intracellular signal transduction | No |
| GO:0048523 | negative regulation of cellular process | No |
| GO:0031570 | DNA integrity checkpoint signaling | No |
| GO:0005575 | cellular_component | No |
| GO:0050789 | regulation of biological process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | 0.403 | 0.5117 | 0.1561 | 0.1382 | 0.2598 | 0.009 | 0.0997 | 0.0664 | 0.0909 | 0.0152 |
| Orthofinder run ID | 4 |
| Orthogroup | 4762 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|1004 MPILNFTLSEEGTAAFRDALTCLNKFSDDVSLEARKESFVLTTLNNSKSAYASFTFATNRFFSRYQFQASGQYRD RFYCSLYIRALISLFRSRSGAMLPSRTARG* |
| Coding | >Hirsu2|1004 ATGCCCATTCTCAACTTTACACTGAGTGAAGAGGGTACCGCTGCCTTCCGTGACGCCCTCACCTGTCTGAACAAG TTCAGTGACGACGTCTCTCTCGAAGCACGAAAGGAATCTTTCGTCCTCACAACCCTCAACAACTCTAAGTCCGCA TACGCCAGCTTCACGTTCGCGACCAACCGCTTCTTTTCCCGCTACCAGTTCCAGGCCAGCGGACAATACCGCGAC CGATTCTACTGCAGCCTGTACATCCGGGCTCTCATCTCGCTCTTCAGGAGCCGCTCTGGTGCGATGCTGCCATCG AGGACGGCGAGGGGGTGA |
| Transcript | >Hirsu2|1004 ATGCCCATTCTCAACTTTACACTGAGTGAAGAGGGTACCGCTGCCTTCCGTGACGCCCTCACCTGTCTGAACAAG TTCAGTGACGACGTCTCTCTCGAAGCACGAAAGGAATCTTTCGTCCTCACAACCCTCAACAACTCTAAGTCCGCA TACGCCAGCTTCACGTTCGCGACCAACCGCTTCTTTTCCCGCTACCAGTTCCAGGCCAGCGGACAATACCGCGAC CGATTCTACTGCAGCCTGTACATCCGGGCTCTCATCTCGCTCTTCAGGAGCCGCTCTGGTGCGATGCTGCCATCG AGGACGGCGAGGGGGTGA |
| Gene | >Hirsu2|1004 ATGCCCATTCTCAACTTTACACTGAGTGAAGAGGGTACCGCTGCCTTCCGTGACGCCCTCACCTGTCTGAACAAG TTCAGTGACGACGTCTCTCTCGAAGCACGAAAGGAATCTGTATGATGTCTCGGCCGGTCGGGCGCTGACGTTAAG AATCATCGAGGTCTCACCATAATTGCAGTTCGTCCTCACAACCCTCAACAACTCTAAGTCCGCATACGCCAGCTT CACGTTCGCGACCAACCGCTTCTTTTCCCGCTACCAGTTCCAGGCCAGCGGACAATACCGCGACCGATTCTACTG CAGCCTGTACATCCGGGTGAGTGGCATTGCCCACGTTTCCCTGATGCCTGGCTCTGGCTGAACGATGATGCCAGG CTCTCATCTCGCTCTTCAGGAGCCGCTCTGGTGTCGATCTTCAGAGAGATGCCGAGAAGCAGACGCTTATCGAAA GGTGCGATGCTGCCATCGAGGACGGCGAGGGGGTGA |