© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|10012 |
| Gene name | |
| Location | Contig_775:486..1210 |
| Strand | - |
| Gene length (bp) | 724 |
| Transcript length (bp) | 540 |
| Coding sequence length (bp) | 540 |
| Protein length (aa) | 180 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CA12|PRIM_ASFM2 | Putative helicase/primase complex protein OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-055 PE=3 SV=1 | 103 | 170 | 7.0E-07 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1537 | 0.1309 | 0.9355 | 0.2968 | 0.0539 | 0.0093 | 0.1001 | 0.0989 | 0.1514 | 0.0029 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 18 | 0.999637 |
| Orthofinder run ID | 4 |
| Orthogroup | 8372 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|10012 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|10012 MHFHDLAALGLLSAAVQAAPRPFGPEQAEAGYESPGRAPPRGTGAPAVKAGHVYAGVADPESGGAAGQAYGDVGR VETPQGCPTGGVVVSTTTIEYTVFITPTQGPRGTEGTTSTKKTTTSTKKKTTPAKQTTTSAKKKTTPAKQTTTSA KKKTTPAKQTTTSAKKKTTTGRTRRRPSR* |
| Coding | >Hirsu2|10012 ATGCACTTCCACGATCTGGCGGCCCTTGGCCTGTTGTCGGCAGCCGTGCAGGCAGCGCCCAGGCCTTTCGGCCCC GAGCAGGCCGAGGCCGGATACGAGTCCCCGGGCCGGGCCCCCCCGCGCGGCACCGGAGCCCCGGCCGTGAAGGCC GGGCACGTGTACGCCGGCGTCGCGGACCCAGAGTCCGGCGGCGCCGCGGGCCAAGCGTACGGCGACGTGGGCCGG GTCGAGACGCCGCAGGGCTGCCCGACGGGGGGCGTGGTGGTGTCGACGACGACGATCGAGTACACCGTCTTCATC ACGCCGACGCAGGGGCCGCGCGGCACCGAGGGCACGACGTCGACCAAGAAGACGACGACGTCGACTAAGAAGAAG ACGACGCCGGCCAAGCAGACGACGACGTCGGCCAAGAAGAAGACGACGCCGGCCAAGCAGACGACGACGTCGGCC AAGAAGAAGACGACGCCGGCCAAGCAGACGACGACGTCGGCCAAGAAGAAGACGACTACGGGACGGACACGTCGC CGGCCGAGCCGCTGA |
| Transcript | >Hirsu2|10012 ATGCACTTCCACGATCTGGCGGCCCTTGGCCTGTTGTCGGCAGCCGTGCAGGCAGCGCCCAGGCCTTTCGGCCCC GAGCAGGCCGAGGCCGGATACGAGTCCCCGGGCCGGGCCCCCCCGCGCGGCACCGGAGCCCCGGCCGTGAAGGCC GGGCACGTGTACGCCGGCGTCGCGGACCCAGAGTCCGGCGGCGCCGCGGGCCAAGCGTACGGCGACGTGGGCCGG GTCGAGACGCCGCAGGGCTGCCCGACGGGGGGCGTGGTGGTGTCGACGACGACGATCGAGTACACCGTCTTCATC ACGCCGACGCAGGGGCCGCGCGGCACCGAGGGCACGACGTCGACCAAGAAGACGACGACGTCGACTAAGAAGAAG ACGACGCCGGCCAAGCAGACGACGACGTCGGCCAAGAAGAAGACGACGCCGGCCAAGCAGACGACGACGTCGGCC AAGAAGAAGACGACGCCGGCCAAGCAGACGACGACGTCGGCCAAGAAGAAGACGACTACGGGACGGACACGTCGC CGGCCGAGCCGCTGA |
| Gene | >Hirsu2|10012 ATGCACTTCCACGATCTGGCGGCCCTTGGCCTGTTGTCGGCAGCCGTGCAGGCAGCGCCCAGGCCTTTCGGCCCC GAGCAGGTGAAATAACTCCCCTCCCCCTCTTCCGCGGACGAGAACGGACAGGCCGAGGACTAACAGGGAACCAAC CAACAACAGGCCGAGGCCGGATACGAGTCCCCGGGCCGGGCCCCCCCGCGCGGCACCGGAGCCCCGGCCGTGAAG GCCGGGCACGTGTACGCCGGCGTCGCGGACCCAGAGTCCGGCGGCGCCGCGGGCCAAGCGTACGGCGACGTGGGC CGGGTCGAGACGCCGCAGGGCTGCCCGACGGGGGGCGTGGTGGTGTCGACGACGACGATCGAGTACACCGTCTTC ATCACGCCGACGCAGGGGCCGCGCGGCACCGAGGGCACGACGTCGACCAAGAAGACGACGACGTCGACTAAGAAG AAGACGACGCCGGCCAAGCAGACGACGACGTCGGCCAAGAAGAAGACGACGCCGGCCAAGCAGACGACGACGTCG GCCAAGAAGAAGACGACGCCGGCCAAGCAGACGACGACGTCGGCCAAGAAGAAGACGACGTCGGCCAAGAAGACG ACGACGCAGCCCCCGCGCCCGGACCCGACGGGGCCCGCGCCGGACTCAACGAAGCAGCGCAAGACGACGAGCAGC CGGCCGCCGCAGCAGTACGGGACGGACACGTCGCCGGCCGAGCCGCTGA |