Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|10012
Gene name
LocationContig_775:486..1210
Strand-
Gene length (bp)724
Transcript length (bp)540
Coding sequence length (bp)540
Protein length (aa) 180

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P0CA12|PRIM_ASFM2 Putative helicase/primase complex protein OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-055 PE=3 SV=1 103 170 7.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|10012
MHFHDLAALGLLSAAVQAAPRPFGPEQAEAGYESPGRAPPRGTGAPAVKAGHVYAGVADPESGGAAGQAYGDVGR
VETPQGCPTGGVVVSTTTIEYTVFITPTQGPRGTEGTTSTKKTTTSTKKKTTPAKQTTTSAKKKTTPAKQTTTSA
KKKTTPAKQTTTSAKKKTTTGRTRRRPSR*
Coding >Hirsu2|10012
ATGCACTTCCACGATCTGGCGGCCCTTGGCCTGTTGTCGGCAGCCGTGCAGGCAGCGCCCAGGCCTTTCGGCCCC
GAGCAGGCCGAGGCCGGATACGAGTCCCCGGGCCGGGCCCCCCCGCGCGGCACCGGAGCCCCGGCCGTGAAGGCC
GGGCACGTGTACGCCGGCGTCGCGGACCCAGAGTCCGGCGGCGCCGCGGGCCAAGCGTACGGCGACGTGGGCCGG
GTCGAGACGCCGCAGGGCTGCCCGACGGGGGGCGTGGTGGTGTCGACGACGACGATCGAGTACACCGTCTTCATC
ACGCCGACGCAGGGGCCGCGCGGCACCGAGGGCACGACGTCGACCAAGAAGACGACGACGTCGACTAAGAAGAAG
ACGACGCCGGCCAAGCAGACGACGACGTCGGCCAAGAAGAAGACGACGCCGGCCAAGCAGACGACGACGTCGGCC
AAGAAGAAGACGACGCCGGCCAAGCAGACGACGACGTCGGCCAAGAAGAAGACGACTACGGGACGGACACGTCGC
CGGCCGAGCCGCTGA
Transcript >Hirsu2|10012
ATGCACTTCCACGATCTGGCGGCCCTTGGCCTGTTGTCGGCAGCCGTGCAGGCAGCGCCCAGGCCTTTCGGCCCC
GAGCAGGCCGAGGCCGGATACGAGTCCCCGGGCCGGGCCCCCCCGCGCGGCACCGGAGCCCCGGCCGTGAAGGCC
GGGCACGTGTACGCCGGCGTCGCGGACCCAGAGTCCGGCGGCGCCGCGGGCCAAGCGTACGGCGACGTGGGCCGG
GTCGAGACGCCGCAGGGCTGCCCGACGGGGGGCGTGGTGGTGTCGACGACGACGATCGAGTACACCGTCTTCATC
ACGCCGACGCAGGGGCCGCGCGGCACCGAGGGCACGACGTCGACCAAGAAGACGACGACGTCGACTAAGAAGAAG
ACGACGCCGGCCAAGCAGACGACGACGTCGGCCAAGAAGAAGACGACGCCGGCCAAGCAGACGACGACGTCGGCC
AAGAAGAAGACGACGCCGGCCAAGCAGACGACGACGTCGGCCAAGAAGAAGACGACTACGGGACGGACACGTCGC
CGGCCGAGCCGCTGA
Gene >Hirsu2|10012
ATGCACTTCCACGATCTGGCGGCCCTTGGCCTGTTGTCGGCAGCCGTGCAGGCAGCGCCCAGGCCTTTCGGCCCC
GAGCAGGTGAAATAACTCCCCTCCCCCTCTTCCGCGGACGAGAACGGACAGGCCGAGGACTAACAGGGAACCAAC
CAACAACAGGCCGAGGCCGGATACGAGTCCCCGGGCCGGGCCCCCCCGCGCGGCACCGGAGCCCCGGCCGTGAAG
GCCGGGCACGTGTACGCCGGCGTCGCGGACCCAGAGTCCGGCGGCGCCGCGGGCCAAGCGTACGGCGACGTGGGC
CGGGTCGAGACGCCGCAGGGCTGCCCGACGGGGGGCGTGGTGGTGTCGACGACGACGATCGAGTACACCGTCTTC
ATCACGCCGACGCAGGGGCCGCGCGGCACCGAGGGCACGACGTCGACCAAGAAGACGACGACGTCGACTAAGAAG
AAGACGACGCCGGCCAAGCAGACGACGACGTCGGCCAAGAAGAAGACGACGCCGGCCAAGCAGACGACGACGTCG
GCCAAGAAGAAGACGACGCCGGCCAAGCAGACGACGACGTCGGCCAAGAAGAAGACGACGTCGGCCAAGAAGACG
ACGACGCAGCCCCCGCGCCCGGACCCGACGGGGCCCGCGCCGGACTCAACGAAGCAGCGCAAGACGACGAGCAGC
CGGCCGCCGCAGCAGTACGGGACGGACACGTCGCCGGCCGAGCCGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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