Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF05496
Short nameRuvB_N
Long nameHolliday junction DNA helicase RuvB P-loop domain
Proteins with at least one of this domain12
Total domain count13
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Hirsu2|10100 PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain 1.2E-17 41 122
PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 2.0E-06 143 206
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.4E-06 256 375
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-47 257 386
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 3.2E-06 257 331
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.1E-07 257 354
PF17862 AAA_lid_3 AAA+ lid domain 9.4E-12 409 448
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-47 531 664
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 5.5E-05 531 564
PF17862 AAA_lid_3 AAA+ lid domain 6.4E-07 686 725
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 1.5E-04 746 779
Hirsu2|10748 PF06068 TIP49 TIP49 P-loop domain 5.1E-154 20 362
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 7.1E-05 43 101
PF03796 DnaB_C DnaB-like helicase C terminal domain 1.7E-06 65 179
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.2E-05 72 123
PF17856 TIP49_C TIP49 AAA-lid domain 1.4E-19 368 433
Hirsu2|1296 PF06068 TIP49 TIP49 P-loop domain 5.1E-167 15 369
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 2.4E-06 39 92
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.3E-07 67 119
PF17856 TIP49_C TIP49 AAA-lid domain 6.5E-25 375 440
Hirsu2|2287 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 7.0E-06 105 171
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.9E-38 107 233
PF17862 AAA_lid_3 AAA+ lid domain 9.6E-08 258 290
Hirsu2|3779 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 6.4E-05 40 90
PF13173 AAA_14 AAA domain 2.2E-06 68 173
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.4E-11 69 186
PF01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase 1.5E-04 70 149
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 1.2E-08 109 190
PF08542 Rep_fac_C Replication factor C C-terminal domain 8.3E-23 255 341
Hirsu2|4221 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 5.9E-05 541 611
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.4E-37 543 688
PF17862 AAA_lid_3 AAA+ lid domain 1.6E-08 711 746
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 8.0E-06 758 791
Hirsu2|5232 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 9.3E-11 59 114
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.5E-05 171 238
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.8E-05 171 292
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-42 172 305
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 9.3E-06 172 264
PF17862 AAA_lid_3 AAA+ lid domain 4.8E-10 327 371
Hirsu2|5908 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.2E-05 147 266
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.5E-05 147 217
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.7E-38 148 281
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 3.7E-05 148 229
PF17862 AAA_lid_3 AAA+ lid domain 1.9E-09 305 342
Hirsu2|60 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 8.3E-08 139 257
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-13 171 278
PF16193 AAA_assoc_2 AAA C-terminal domain 1.3E-22 310 379
PF12002 MgsA_C MgsA AAA+ ATPase C terminal 7.7E-62 380 537
Hirsu2|6237 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.8E-12 222 350
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.7E-04 523 591
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.2E-04 523 618
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.4E-04 523 634
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.9E-44 524 652
Hirsu2|6745 PF03215 Rad17 Rad17 P-loop domain 3.0E-09 30 94
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 2.4E-05 40 90
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 5.6E-11 50 200
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-15 69 197
PF08542 Rep_fac_C Replication factor C C-terminal domain 7.4E-22 285 374
Hirsu2|8595 PF04212 MIT MIT (microtubule interacting and transport) domain 1.8E-16 7 71
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 8.2E-07 157 253
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.2E-41 164 292
PF17862 AAA_lid_3 AAA+ lid domain 2.7E-06 318 347
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 1.8E-26 366 426

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