Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00271
Short nameHelicase_C
Long nameHelicase conserved C-terminal domain
Proteins with at least one of this domain69
Total domain count69
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Hirsu2|10079 PF00270 DEAD DEAD/DEAH box helicase 1.4E-46 109 280
PF00271 Helicase_C Helicase conserved C-terminal domain 6.2E-25 325 427
Hirsu2|10215 PF00271 Helicase_C Helicase conserved C-terminal domain 1.3E-13 588 715
PF04408 HA2 Helicase associated domain (HA2) 8.9E-19 777 866
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 1.3E-21 926 1005
Hirsu2|10420 PF04851 ResIII Type III restriction enzyme, res subunit 7.5E-07 190 402
PF00176 SNF2_N SNF2 family N-terminal domain 3.6E-69 191 523
PF00270 DEAD DEAD/DEAH box helicase 3.8E-09 245 377
PF00271 Helicase_C Helicase conserved C-terminal domain 1.7E-11 671 769
Hirsu2|10649 PF00271 Helicase_C Helicase conserved C-terminal domain 1.3E-11 42 153
Hirsu2|10789 PF07529 HSA HSA 4.4E-18 401 471
PF00176 SNF2_N SNF2 family N-terminal domain 1.3E-73 579 862
PF00271 Helicase_C Helicase conserved C-terminal domain 2.7E-18 886 999
PF14619 SnAC Snf2-ATP coupling, chromatin remodelling complex 1.3E-15 1094 1159
PF00439 Bromodomain Bromodomain 2.8E-19 1302 1374
Hirsu2|10841 PF04851 ResIII Type III restriction enzyme, res subunit 5.3E-06 173 345
PF00176 SNF2_N SNF2 family N-terminal domain 1.1E-48 191 451
PF16203 ERCC3_RAD25_C ERCC3/RAD25/XPB C-terminal helicase 1.2E-06 537 647
PF00271 Helicase_C Helicase conserved C-terminal domain 3.5E-18 550 662
PF14773 VIGSSK Helicase-associated putative binding domain, C-terminal 4.0E-25 798 862
Hirsu2|10865 PF00270 DEAD DEAD/DEAH box helicase 3.4E-39 55 227
PF04851 ResIII Type III restriction enzyme, res subunit 2.3E-06 68 190
PF00271 Helicase_C Helicase conserved C-terminal domain 3.5E-28 268 425
Hirsu2|10869 PF00270 DEAD DEAD/DEAH box helicase 2.1E-38 80 248
PF04851 ResIII Type III restriction enzyme, res subunit 8.7E-08 96 244
PF00271 Helicase_C Helicase conserved C-terminal domain 5.0E-24 286 394
Hirsu2|11002 PF04851 ResIII Type III restriction enzyme, res subunit 4.7E-09 167 360
PF00176 SNF2_N SNF2 family N-terminal domain 6.5E-45 190 451
PF00271 Helicase_C Helicase conserved C-terminal domain 3.2E-15 731 828
Hirsu2|1114 PF04851 ResIII Type III restriction enzyme, res subunit 1.2E-09 182 341
PF00176 SNF2_N SNF2 family N-terminal domain 1.5E-75 194 465
PF00271 Helicase_C Helicase conserved C-terminal domain 8.6E-18 487 600
PF09110 HAND HAND 1.9E-35 753 857
PF09111 SLIDE SLIDE 1.2E-42 914 1030
Hirsu2|11191 PF00270 DEAD DEAD/DEAH box helicase 3.3E-50 555 725
PF00271 Helicase_C Helicase conserved C-terminal domain 4.0E-26 767 876
Hirsu2|11264 PF00575 S1 S1 RNA binding domain 4.2E-12 13 80
PF00271 Helicase_C Helicase conserved C-terminal domain 8.4E-14 519 648
PF04408 HA2 Helicase associated domain (HA2) 2.1E-23 710 798
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 1.5E-21 856 931
Hirsu2|1357 PF04851 ResIII Type III restriction enzyme, res subunit 2.0E-08 867 1027
PF00176 SNF2_N SNF2 family N-terminal domain 1.5E-65 883 1165
PF00271 Helicase_C Helicase conserved C-terminal domain 3.2E-18 1429 1541
Hirsu2|1574 PF00271 Helicase_C Helicase conserved C-terminal domain 2.7E-12 65 191
PF04408 HA2 Helicase associated domain (HA2) 5.6E-16 253 346
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 5.9E-11 417 488
Hirsu2|1584 PF00270 DEAD DEAD/DEAH box helicase 1.5E-47 218 404
PF00271 Helicase_C Helicase conserved C-terminal domain 2.3E-28 439 543
Hirsu2|162 PF00270 DEAD DEAD/DEAH box helicase 1.9E-42 171 369
PF00271 Helicase_C Helicase conserved C-terminal domain 1.6E-19 475 557
PF13959 DUF4217 Domain of unknown function (DUF4217) 8.7E-17 625 684
Hirsu2|1725 PF00270 DEAD DEAD/DEAH box helicase 3.1E-39 127 301
PF04851 ResIII Type III restriction enzyme, res subunit 4.4E-05 148 296
PF00271 Helicase_C Helicase conserved C-terminal domain 2.8E-30 350 453
Hirsu2|1925 PF12054 DUF3535 Domain of unknown function (DUF3535) 2.8E-128 637 1090
PF00176 SNF2_N SNF2 family N-terminal domain 3.0E-64 1321 1610
PF00271 Helicase_C Helicase conserved C-terminal domain 1.4E-18 1669 1770
Hirsu2|2020 PF17911 Ski2_N Ski2 N-terminal region 5.0E-38 48 195
PF00270 DEAD DEAD/DEAH box helicase 6.5E-17 301 447
PF00271 Helicase_C Helicase conserved C-terminal domain 5.0E-06 663 749
PF13234 rRNA_proc-arch rRNA-processing arch domain 5.9E-30 807 1071
PF08148 DSHCT DSHCT (NUC185) domain 2.2E-50 1099 1268
Hirsu2|2108 PF00270 DEAD DEAD/DEAH box helicase 2.4E-15 362 460
PF04851 ResIII Type III restriction enzyme, res subunit 1.1E-06 367 446
PF00270 DEAD DEAD/DEAH box helicase 2.3E-12 528 614
PF00271 Helicase_C Helicase conserved C-terminal domain 1.8E-18 751 850
Hirsu2|2217 PF00270 DEAD DEAD/DEAH box helicase 3.7E-29 1 148
PF00271 Helicase_C Helicase conserved C-terminal domain 6.8E-23 190 302
Hirsu2|2254 PF00270 DEAD DEAD/DEAH box helicase 8.1E-15 192 302
PF00270 DEAD DEAD/DEAH box helicase 1.2E-06 340 422
PF00271 Helicase_C Helicase conserved C-terminal domain 9.9E-24 495 594
Hirsu2|234 PF00270 DEAD DEAD/DEAH box helicase 1.8E-17 28 194
PF00271 Helicase_C Helicase conserved C-terminal domain 2.8E-14 273 366
PF16124 RecQ_Zn_bind RecQ zinc-binding 5.8E-13 379 440
Hirsu2|2390 PF04851 ResIII Type III restriction enzyme, res subunit 1.1E-06 127 311
PF00270 DEAD DEAD/DEAH box helicase 4.0E-28 129 340
PF00271 Helicase_C Helicase conserved C-terminal domain 3.3E-18 408 528
Hirsu2|2888 PF00270 DEAD DEAD/DEAH box helicase 2.3E-48 152 322
PF04851 ResIII Type III restriction enzyme, res subunit 2.9E-05 172 315
PF00271 Helicase_C Helicase conserved C-terminal domain 5.7E-31 365 470
Hirsu2|2898 PF15446 zf-PHD-like PHD/FYVE-zinc-finger like domain 3.4E-66 400 568
PF04851 ResIII Type III restriction enzyme, res subunit 4.3E-06 772 938
PF00176 SNF2_N SNF2 family N-terminal domain 3.9E-49 784 1061
PF11496 HDA2-3 Class II histone deacetylase complex subunits 2 and 3 1.6E-06 1004 1223
PF00271 Helicase_C Helicase conserved C-terminal domain 1.0E-17 1089 1199
Hirsu2|3081 PF00176 SNF2_N SNF2 family N-terminal domain 1.7E-71 391 759
PF00270 DEAD DEAD/DEAH box helicase 8.7E-06 456 611
PF00271 Helicase_C Helicase conserved C-terminal domain 1.6E-12 945 1043
Hirsu2|3832 PF04851 ResIII Type III restriction enzyme, res subunit 6.3E-08 264 413
PF00270 DEAD DEAD/DEAH box helicase 1.3E-27 267 440
PF00271 Helicase_C Helicase conserved C-terminal domain 2.0E-09 498 607
PF09369 DUF1998 Domain of unknown function (DUF1998) 1.8E-20 871 959
Hirsu2|4098 PF00271 Helicase_C Helicase conserved C-terminal domain 2.1E-14 111 167
PF03368 Dicer_dimer Dicer dimerisation domain 4.4E-23 235 326
Hirsu2|4152 PF13625 Helicase_C_3 Helicase conserved C-terminal domain 3.5E-33 103 227
PF04851 ResIII Type III restriction enzyme, res subunit 1.1E-14 342 499
PF00176 SNF2_N SNF2 family N-terminal domain 4.1E-07 368 502
PF16203 ERCC3_RAD25_C ERCC3/RAD25/XPB C-terminal helicase 2.0E-122 525 760
PF00271 Helicase_C Helicase conserved C-terminal domain 1.1E-11 569 675
Hirsu2|4446 PF00176 SNF2_N SNF2 family N-terminal domain 7.3E-49 338 623
PF00271 Helicase_C Helicase conserved C-terminal domain 3.5E-16 697 809
Hirsu2|4710 PF08658 Rad54_N Rad54 N terminal 1.7E-48 61 229
PF04851 ResIII Type III restriction enzyme, res subunit 9.0E-10 250 429
PF00176 SNF2_N SNF2 family N-terminal domain 2.5E-57 271 561
PF00271 Helicase_C Helicase conserved C-terminal domain 3.1E-15 601 711
Hirsu2|4806 PF00271 Helicase_C Helicase conserved C-terminal domain 2.7E-07 250 321
Hirsu2|4946 PF00270 DEAD DEAD/DEAH box helicase 1.8E-46 71 237
PF04851 ResIII Type III restriction enzyme, res subunit 6.8E-05 91 231
PF00271 Helicase_C Helicase conserved C-terminal domain 6.2E-30 274 382
Hirsu2|505 PF13892 DBINO DNA-binding domain 7.6E-48 741 872
PF04851 ResIII Type III restriction enzyme, res subunit 7.4E-07 982 1150
PF00176 SNF2_N SNF2 family N-terminal domain 3.8E-64 996 1284
PF00271 Helicase_C Helicase conserved C-terminal domain 3.5E-20 1565 1677
Hirsu2|5187 PF00271 Helicase_C Helicase conserved C-terminal domain 2.2E-05 57 116
Hirsu2|52 PF00270 DEAD DEAD/DEAH box helicase 1.1E-45 49 213
PF04851 ResIII Type III restriction enzyme, res subunit 4.3E-05 62 208
PF00271 Helicase_C Helicase conserved C-terminal domain 8.8E-31 250 358
Hirsu2|5276 PF00271 Helicase_C Helicase conserved C-terminal domain 2.8E-23 27 133
Hirsu2|5393 PF00270 DEAD DEAD/DEAH box helicase 1.5E-50 249 428
PF00271 Helicase_C Helicase conserved C-terminal domain 3.1E-30 478 587
Hirsu2|5445 PF00270 DEAD DEAD/DEAH box helicase 6.3E-30 12 131
PF00271 Helicase_C Helicase conserved C-terminal domain 8.9E-23 216 311
Hirsu2|5465 PF00176 SNF2_N SNF2 family N-terminal domain 4.7E-08 2 92
PF13920 zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 6.0E-09 128 185
PF13923 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 8.4E-08 129 159
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 1.6E-08 130 181
PF00271 Helicase_C Helicase conserved C-terminal domain 1.3E-15 321 435
Hirsu2|5560 PF00176 SNF2_N SNF2 family N-terminal domain 3.1E-60 151 497
PF04851 ResIII Type III restriction enzyme, res subunit 3.9E-05 151 370
PF00271 Helicase_C Helicase conserved C-terminal domain 3.2E-07 609 722
Hirsu2|574 PF00176 SNF2_N SNF2 family N-terminal domain 1.2E-43 112 291
PF04851 ResIII Type III restriction enzyme, res subunit 9.9E-07 114 268
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 9.6E-06 449 488
PF00271 Helicase_C Helicase conserved C-terminal domain 6.3E-16 527 641
Hirsu2|5849 PF00270 DEAD DEAD/DEAH box helicase 3.9E-40 219 417
PF00271 Helicase_C Helicase conserved C-terminal domain 1.1E-25 476 583
Hirsu2|5997 PF00270 DEAD DEAD/DEAH box helicase 4.9E-42 53 215
PF00271 Helicase_C Helicase conserved C-terminal domain 1.2E-32 254 362
Hirsu2|6011 PF00270 DEAD DEAD/DEAH box helicase 3.8E-48 75 244
PF04851 ResIII Type III restriction enzyme, res subunit 5.0E-06 92 237
PF00271 Helicase_C Helicase conserved C-terminal domain 9.0E-25 281 391
PF13959 DUF4217 Domain of unknown function (DUF4217) 1.3E-20 433 493
Hirsu2|6366 PF00271 Helicase_C Helicase conserved C-terminal domain 4.3E-09 333 438
PF18147 Suv3_C_1 Suv3 C-terminal domain 1 4.8E-12 536 578
PF12513 SUV3_C Mitochondrial degradasome RNA helicase subunit C terminal 1.5E-14 611 657
Hirsu2|6534 PF00270 DEAD DEAD/DEAH box helicase 5.5E-47 311 481
PF00271 Helicase_C Helicase conserved C-terminal domain 5.0E-28 524 627
Hirsu2|6606 PF00271 Helicase_C Helicase conserved C-terminal domain 7.7E-06 221 316
Hirsu2|6747 PF18149 Helicase_PWI N-terminal helicase PWI domain 5.1E-33 289 404
PF00270 DEAD DEAD/DEAH box helicase 7.2E-29 527 702
PF04851 ResIII Type III restriction enzyme, res subunit 4.5E-14 528 701
PF00271 Helicase_C Helicase conserved C-terminal domain 2.3E-07 764 905
PF02889 Sec63 Sec63 Brl domain 3.5E-91 1027 1332
PF00270 DEAD DEAD/DEAH box helicase 3.4E-18 1378 1543
PF04851 ResIII Type III restriction enzyme, res subunit 9.6E-06 1382 1511
PF02889 Sec63 Sec63 Brl domain 8.9E-67 1862 2185
Hirsu2|6799 PF00176 SNF2_N SNF2 family N-terminal domain 8.6E-63 276 588
PF00271 Helicase_C Helicase conserved C-terminal domain 3.2E-18 894 1004
Hirsu2|7019 PF05773 RWD RWD domain 2.0E-08 402 507
PF00270 DEAD DEAD/DEAH box helicase 6.1E-10 589 749
PF00271 Helicase_C Helicase conserved C-terminal domain 1.4E-15 833 951
PF04408 HA2 Helicase associated domain (HA2) 1.1E-16 1015 1087
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 1.0E-14 1199 1300
Hirsu2|7043 PF00270 DEAD DEAD/DEAH box helicase 8.1E-27 276 462
PF04851 ResIII Type III restriction enzyme, res subunit 4.1E-08 279 459
PF02889 Sec63 Sec63 Brl domain 5.8E-81 787 1090
PF00270 DEAD DEAD/DEAH box helicase 3.2E-21 1136 1298
PF04851 ResIII Type III restriction enzyme, res subunit 6.0E-11 1141 1297
PF00271 Helicase_C Helicase conserved C-terminal domain 1.5E-06 1412 1499
PF02889 Sec63 Sec63 Brl domain 1.0E-21 1626 1715
Hirsu2|738 PF00270 DEAD DEAD/DEAH box helicase 2.5E-11 683 838
PF13401 AAA_22 AAA domain 1.3E-07 689 834
PF00271 Helicase_C Helicase conserved C-terminal domain 5.6E-14 944 1066
PF04408 HA2 Helicase associated domain (HA2) 2.9E-14 1131 1207
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 4.0E-08 1321 1398
Hirsu2|7829 PF00270 DEAD DEAD/DEAH box helicase 3.9E-42 103 289
PF00271 Helicase_C Helicase conserved C-terminal domain 6.9E-20 349 453
Hirsu2|8271 PF00270 DEAD DEAD/DEAH box helicase 6.1E-08 111 256
PF00271 Helicase_C Helicase conserved C-terminal domain 5.0E-10 295 435
PF04408 HA2 Helicase associated domain (HA2) 1.1E-17 498 586
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 3.1E-22 653 728
Hirsu2|8381 PF04851 ResIII Type III restriction enzyme, res subunit 1.5E-07 915 1087
PF00270 DEAD DEAD/DEAH box helicase 7.9E-21 919 1091
PF00271 Helicase_C Helicase conserved C-terminal domain 3.8E-13 1132 1237
PF16124 RecQ_Zn_bind RecQ zinc-binding 4.7E-15 1250 1315
PF09382 RQC RQC domain 1.4E-13 1321 1432
Hirsu2|8384 PF00270 DEAD DEAD/DEAH box helicase 3.9E-17 163 321
PF04851 ResIII Type III restriction enzyme, res subunit 1.3E-21 164 316
PF00271 Helicase_C Helicase conserved C-terminal domain 1.4E-21 519 626
Hirsu2|8391 PF00270 DEAD DEAD/DEAH box helicase 1.0E-07 395 560
PF00271 Helicase_C Helicase conserved C-terminal domain 1.8E-10 701 795
Hirsu2|8713 PF00270 DEAD DEAD/DEAH box helicase 1.1E-43 127 316
PF00271 Helicase_C Helicase conserved C-terminal domain 9.2E-26 354 466
Hirsu2|8743 PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 3.9E-07 248 307
PF00385 Chromo Chromo (CHRromatin Organisation MOdifier) domain 3.9E-16 346 396
PF00176 SNF2_N SNF2 family N-terminal domain 2.6E-53 449 716
PF11496 HDA2-3 Class II histone deacetylase complex subunits 2 and 3 3.3E-07 667 883
PF00271 Helicase_C Helicase conserved C-terminal domain 1.9E-18 744 856
PF18196 Cdh1_DBD_1 Chromodomain helicase DNA-binding domain 1 4.0E-06 1071 1138
PF13907 DUF4208 Domain of unknown function (DUF4208) 5.7E-17 1493 1588
Hirsu2|9151 PF08797 HIRAN HIRAN domain 6.9E-18 79 164
PF00176 SNF2_N SNF2 family N-terminal domain 2.9E-71 282 607
PF13920 zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 4.5E-08 647 691
PF13639 zf-RING_2 Ring finger domain 8.9E-07 649 688
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 3.1E-07 650 687
PF13445 zf-RING_UBOX RING-type zinc-finger 2.0E-05 650 685
PF13923 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 7.8E-08 650 687
PF14634 zf-RING_5 zinc-RING finger domain 3.4E-07 650 689
PF00271 Helicase_C Helicase conserved C-terminal domain 5.2E-15 717 830
Hirsu2|9346 PF00270 DEAD DEAD/DEAH box helicase 4.9E-07 238 389
PF00271 Helicase_C Helicase conserved C-terminal domain 5.0E-13 434 560
PF04408 HA2 Helicase associated domain (HA2) 1.9E-22 625 709
PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold 5.9E-19 768 844
Hirsu2|9387 PF04851 ResIII Type III restriction enzyme, res subunit 4.3E-07 148 410
PF00176 SNF2_N SNF2 family N-terminal domain 3.1E-72 153 546
PF00271 Helicase_C Helicase conserved C-terminal domain 2.8E-14 705 811
Hirsu2|9450 PF00270 DEAD DEAD/DEAH box helicase 6.6E-21 71 246
PF00271 Helicase_C Helicase conserved C-terminal domain 2.7E-16 284 390
Hirsu2|967 PF04851 ResIII Type III restriction enzyme, res subunit 2.5E-13 138 306
PF00270 DEAD DEAD/DEAH box helicase 1.2E-11 140 306
PF00271 Helicase_C Helicase conserved C-terminal domain 2.3E-15 476 591
PF03368 Dicer_dimer Dicer dimerisation domain 7.6E-17 669 755
PF14622 Ribonucleas_3_3 Ribonuclease-III-like 7.5E-09 1098 1213
PF00636 Ribonuclease_3 Ribonuclease III domain 1.9E-19 1107 1213
PF14622 Ribonucleas_3_3 Ribonuclease-III-like 7.1E-11 1290 1369
PF00636 Ribonuclease_3 Ribonuclease III domain 5.3E-19 1310 1457
Hirsu2|9694 PF00176 SNF2_N SNF2 family N-terminal domain 7.3E-46 2 248
PF00271 Helicase_C Helicase conserved C-terminal domain 2.1E-11 373 483
Hirsu2|9843 PF04851 ResIII Type III restriction enzyme, res subunit 1.4E-07 402 583
PF00176 SNF2_N SNF2 family N-terminal domain 3.5E-65 416 715
PF00271 Helicase_C Helicase conserved C-terminal domain 4.4E-16 748 849
Hirsu2|9878 PF00270 DEAD DEAD/DEAH box helicase 1.8E-17 163 309
PF00271 Helicase_C Helicase conserved C-terminal domain 4.3E-06 481 560
PF13234 rRNA_proc-arch rRNA-processing arch domain 3.5E-89 614 891
PF08148 DSHCT DSHCT (NUC185) domain 1.7E-49 919 1088

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