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| PFAM domain | PF00076 |
| Short name | RRM_1 |
| Long name | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
| Proteins with at least one of this domain | 60 |
| Total domain count | 89 |
| More information | PFAM website |
| Short name | Long name | E-value | Start | End | Name | ||
|---|---|---|---|---|---|---|---|
| protein ID | PFAM | ||||||
| Hirsu2|10338 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.6E-11 | 173 | 232 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.3E-09 | 261 | 326 | ||
| Hirsu2|1044 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.7E-04 | 25 | 81 | |
| Hirsu2|10454 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.5E-12 | 387 | 445 | |
| PF00806 | PUF | Pumilio-family RNA binding repeat | 4.9E-07 | 599 | 631 | ||
| PF00806 | PUF | Pumilio-family RNA binding repeat | 9.8E-03 | 634 | 667 | ||
| PF00806 | PUF | Pumilio-family RNA binding repeat | 1.0E-01 | 677 | 692 | ||
| Hirsu2|10612 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.3E-19 | 10 | 76 | |
| Hirsu2|10619 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.0E-09 | 379 | 442 | |
| Hirsu2|10641 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.9E-05 | 112 | 184 | |
| Hirsu2|10742 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.6E-16 | 11 | 83 | |
| Hirsu2|10776 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.8E-13 | 35 | 104 | |
| Hirsu2|10914 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.5E-09 | 18 | 82 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.2E-08 | 154 | 231 | ||
| Hirsu2|1294 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.1E-12 | 2 | 68 | |
| Hirsu2|1463 | PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.9E-02 | 48 | 138 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.3E-18 | 62 | 131 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.3E-17 | 150 | 218 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.6E-21 | 243 | 311 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.5E-08 | 346 | 382 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.4E-08 | 416 | 455 | ||
| PF00658 | PABP | Poly-adenylate binding protein, unique domain | 1.2E-27 | 664 | 728 | ||
| Hirsu2|1612 | PF10378 | RRM | Putative RRM domain | 2.4E-08 | 81 | 121 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.9E-11 | 294 | 348 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.3E-10 | 519 | 575 | ||
| Hirsu2|1616 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.4E-16 | 2 | 51 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.4E-16 | 85 | 142 | ||
| Hirsu2|1963 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.9E-05 | 8 | 68 | |
| Hirsu2|2311 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.4E-19 | 72 | 141 | |
| Hirsu2|2496 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.2E-13 | 89 | 158 | |
| Hirsu2|2553 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.6E-09 | 237 | 301 | |
| Hirsu2|2702 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.7E-21 | 4 | 73 | |
| Hirsu2|2993 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.1E-15 | 15 | 83 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.4E-15 | 129 | 199 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.6E-17 | 290 | 358 | ||
| Hirsu2|3251 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.9E-15 | 4 | 59 | |
| Hirsu2|332 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.2E-15 | 50 | 118 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.7E-11 | 234 | 315 | ||
| Hirsu2|3386 | PF01480 | PWI | PWI domain | 1.2E-07 | 11 | 75 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.1E-05 | 323 | 383 | ||
| Hirsu2|3532 | PF16131 | Torus | Torus domain | 2.9E-41 | 45 | 150 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.9E-07 | 187 | 237 | ||
| Hirsu2|3564 | PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.9E-06 | 77 | 165 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.1E-17 | 86 | 155 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.0E-20 | 176 | 246 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.2E-14 | 303 | 366 | ||
| Hirsu2|3760 | PF14570 | zf-RING_4 | RING/Ubox like zinc-binding domain | 5.1E-20 | 15 | 62 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.8E-08 | 123 | 200 | ||
| Hirsu2|4062 | PF00160 | Pro_isomerase | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 1.5E-32 | 3 | 170 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.2E-15 | 253 | 323 | ||
| Hirsu2|4131 | PF00929 | RNase_T | Exonuclease | 1.0E-06 | 19 | 133 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.9E-08 | 255 | 322 | ||
| PF00641 | zf-RanBP | Zn-finger in Ran binding protein and others | 5.7E-11 | 350 | 377 | ||
| PF00641 | zf-RanBP | Zn-finger in Ran binding protein and others | 4.3E-07 | 429 | 458 | ||
| Hirsu2|4180 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.6E-06 | 14 | 74 | |
| Hirsu2|4541 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.9E-17 | 68 | 138 | |
| Hirsu2|4735 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.4E-12 | 66 | 126 | |
| Hirsu2|4831 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.4E-15 | 15 | 85 | |
| Hirsu2|4853 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.9E-05 | 216 | 271 | |
| PF10443 | RNA12 | RNA12 protein | 4.4E-90 | 377 | 599 | ||
| Hirsu2|5008 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.3E-11 | 10 | 81 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.0E-11 | 171 | 235 | ||
| Hirsu2|5032 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.9E-15 | 51 | 120 | |
| Hirsu2|51 | PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.9E-02 | 592 | 682 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.7E-09 | 612 | 680 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.3E-08 | 689 | 754 | ||
| PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.3E-02 | 774 | 868 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.9E-16 | 782 | 847 | ||
| Hirsu2|6598 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.3E-15 | 285 | 354 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.6E-12 | 390 | 444 | ||
| Hirsu2|6681 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.1E-16 | 92 | 161 | |
| Hirsu2|6716 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.7E-08 | 6 | 69 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.2E-19 | 311 | 380 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.7E-10 | 493 | 555 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.6E-12 | 609 | 683 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.6E-16 | 714 | 782 | ||
| Hirsu2|6845 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.1E-18 | 46 | 116 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.0E-14 | 150 | 218 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.0E-15 | 318 | 376 | ||
| Hirsu2|6874 | PF01585 | G-patch | G-patch domain | 2.6E-13 | 343 | 383 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.3E-04 | 447 | 491 | ||
| Hirsu2|6917 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.6E-05 | 39 | 79 | |
| Hirsu2|7219 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.1E-07 | 184 | 249 | |
| Hirsu2|7260 | PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.6E-07 | 14 | 128 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.8E-06 | 29 | 101 | ||
| Hirsu2|7295 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.5E-11 | 370 | 441 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.2E-05 | 501 | 561 | ||
| Hirsu2|7316 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.4E-04 | 182 | 252 | |
| PF01424 | R3H | R3H domain | 2.6E-09 | 327 | 380 | ||
| Hirsu2|7394 | PF04818 | CID | CID domain | 2.4E-11 | 10 | 130 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.4E-06 | 473 | 521 | ||
| Hirsu2|7420 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.2E-09 | 311 | 363 | |
| Hirsu2|759 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.3E-12 | 217 | 274 | |
| Hirsu2|7611 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.1E-08 | 54 | 121 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.0E-10 | 239 | 311 | ||
| Hirsu2|7834 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.7E-21 | 10 | 80 | |
| PF14327 | CSTF2_hinge | Hinge domain of cleavage stimulation factor subunit 2 | 1.2E-32 | 122 | 201 | ||
| PF14304 | CSTF_C | Transcription termination and cleavage factor C-terminal | 2.5E-10 | 261 | 291 | ||
| Hirsu2|8215 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.9E-16 | 290 | 359 | |
| Hirsu2|8749 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.4E-04 | 85 | 144 | |
| Hirsu2|877 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.5E-09 | 31 | 96 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.1E-13 | 124 | 194 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.1E-16 | 260 | 323 | ||
| Hirsu2|9405 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.0E-12 | 81 | 147 | |
| Hirsu2|9709 | PF12220 | U1snRNP70_N | U1 small nuclear ribonucleoprotein of 70kDa MW N terminal | 9.4E-27 | 3 | 93 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.9E-16 | 106 | 182 | ||
| Hirsu2|9730 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.2E-14 | 122 | 188 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.0E-18 | 222 | 291 | ||
| PF15519 | RBM39linker | linker between RRM2 and RRM3 domains in RBM39 protein | 8.1E-25 | 349 | 423 | ||
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.5E-04 | 428 | 482 | ||
| Hirsu2|982 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.0E-07 | 6 | 55 | |
| Hirsu2|983 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.7E-09 | 9 | 57 | |
| Hirsu2|990 | PF05383 | La | La domain | 6.4E-20 | 99 | 156 | |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.8E-09 | 204 | 262 | ||
| Hirsu2|9921 | PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.1E-11 | 8 | 72 |