Fungal Genomics

at Utrecht University

PFAM Domain


General information

PFAM domainPF00004
Short nameAAA
Long nameATPase family associated with various cellular activities (AAA)
Proteins with at least one of this domain46
Total domain count55
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Hirsu2|10100 PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain 1.2E-17 41 122
PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 2.0E-06 143 206
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.4E-06 256 375
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-47 257 386
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 3.2E-06 257 331
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 2.1E-07 257 354
PF17862 AAA_lid_3 AAA+ lid domain 9.4E-12 409 448
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-47 531 664
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 5.5E-05 531 564
PF17862 AAA_lid_3 AAA+ lid domain 6.4E-07 686 725
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 1.5E-04 746 779
Hirsu2|10142 PF00485 PRK Phosphoribulokinase / Uridine kinase family 1.7E-05 26 167
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.9E-04 29 55
Hirsu2|10180 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.9E-15 481 596
Hirsu2|10191 PF06480 FtsH_ext FtsH Extracellular 1.2E-10 238 342
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.9E-41 445 578
PF17862 AAA_lid_3 AAA+ lid domain 4.1E-13 607 646
PF01434 Peptidase_M41 Peptidase family M41 5.6E-68 662 841
Hirsu2|10335 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.9E-07 174 338
Hirsu2|10471 PF01426 BAH BAH domain 1.1E-10 92 210
PF13191 AAA_16 AAA ATPase domain 6.3E-09 333 472
PF13401 AAA_22 AAA domain 1.2E-07 355 466
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.0E-15 359 501
PF17872 AAA_lid_10 AAA lid domain 3.1E-10 532 566
Hirsu2|10748 PF06068 TIP49 TIP49 P-loop domain 5.1E-154 20 362
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 7.1E-05 43 101
PF03796 DnaB_C DnaB-like helicase C terminal domain 1.7E-06 65 179
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.2E-05 72 123
PF17856 TIP49_C TIP49 AAA-lid domain 1.4E-19 368 433
Hirsu2|1152 PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.4E-40 220 351
PF17862 AAA_lid_3 AAA+ lid domain 1.7E-06 377 416
Hirsu2|1160 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 6.4E-07 56 104
PF07728 AAA_5 AAA domain (dynein-related subfamily) 9.8E-07 168 289
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.4E-43 169 301
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.1E-06 169 262
PF17862 AAA_lid_3 AAA+ lid domain 4.4E-14 325 367
Hirsu2|1296 PF06068 TIP49 TIP49 P-loop domain 5.1E-167 15 369
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 2.4E-06 39 92
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.3E-07 67 119
PF17856 TIP49_C TIP49 AAA-lid domain 6.5E-25 375 440
Hirsu2|135 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.5E-18 535 654
Hirsu2|1548 PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2 5.2E-06 178 219
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.8E-36 323 464
PF17862 AAA_lid_3 AAA+ lid domain 1.1E-08 491 526
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.4E-10 605 735
Hirsu2|1691 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 2.2E-11 126 180
PF05673 DUF815 Protein of unknown function (DUF815) 2.1E-05 234 304
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.9E-41 239 371
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 8.7E-06 240 332
PF17862 AAA_lid_3 AAA+ lid domain 5.7E-11 394 437
Hirsu2|2084 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 5.3E-33 182 452
PF08298 AAA_PrkA PrkA AAA domain 1.2E-04 570 626
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.5E-21 603 740
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.7E-06 603 700
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 8.4E-06 604 728
Hirsu2|2287 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 7.0E-06 105 171
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.9E-38 107 233
PF17862 AAA_lid_3 AAA+ lid domain 9.6E-08 258 290
Hirsu2|2680 PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-14 535 651
Hirsu2|288 PF03215 Rad17 Rad17 P-loop domain 9.4E-09 43 186
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 8.6E-12 61 213
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.4E-16 80 211
PF13604 AAA_30 AAA domain 5.6E-07 80 184
PF08542 Rep_fac_C Replication factor C C-terminal domain 1.7E-14 296 381
Hirsu2|3695 PF00493 MCM MCM P-loop domain 1.9E-05 125 208
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 3.5E-25 128 236
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.2E-06 130 206
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.0E-12 131 234
Hirsu2|3779 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 6.4E-05 40 90
PF13173 AAA_14 AAA domain 2.2E-06 68 173
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.4E-11 69 186
PF01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase 1.5E-04 70 149
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 1.2E-08 109 190
PF08542 Rep_fac_C Replication factor C C-terminal domain 8.3E-23 255 341
Hirsu2|4221 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 5.9E-05 541 611
PF00004 AAA ATPase family associated with various cellular activities (AAA) 9.4E-37 543 688
PF17862 AAA_lid_3 AAA+ lid domain 1.6E-08 711 746
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 8.0E-06 758 791
Hirsu2|4469 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 5.9E-18 71 147
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.6E-39 206 338
PF17862 AAA_lid_3 AAA+ lid domain 8.8E-08 361 401
Hirsu2|4779 PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 3.6E-11 20 184
PF00004 AAA ATPase family associated with various cellular activities (AAA) 6.8E-07 38 179
Hirsu2|503 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.4E-05 7 106
Hirsu2|5232 PF16450 Prot_ATP_ID_OB Proteasomal ATPase OB C-terminal domain 9.3E-11 59 114
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.5E-05 171 238
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.8E-05 171 292
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-42 172 305
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 9.3E-06 172 264
PF17862 AAA_lid_3 AAA+ lid domain 4.8E-10 327 371
Hirsu2|5700 PF13191 AAA_16 AAA ATPase domain 2.6E-13 127 223
PF13401 AAA_22 AAA domain 8.9E-10 151 274
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.0E-04 155 289
PF17872 AAA_lid_10 AAA lid domain 3.1E-06 332 373
PF09079 Cdc6_C CDC6, C terminal winged helix domain 9.8E-06 483 530
Hirsu2|5908 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.2E-05 147 266
PF07728 AAA_5 AAA domain (dynein-related subfamily) 3.5E-05 147 217
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.7E-38 148 281
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 3.7E-05 148 229
PF17862 AAA_lid_3 AAA+ lid domain 1.9E-09 305 342
Hirsu2|60 PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 8.3E-08 139 257
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-13 171 278
PF16193 AAA_assoc_2 AAA C-terminal domain 1.3E-22 310 379
PF12002 MgsA_C MgsA AAA+ ATPase C terminal 7.7E-62 380 537
Hirsu2|605 PF12775 AAA_7 P-loop containing dynein motor region 2.8E-07 280 345
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.8E-22 304 427
PF17867 AAA_lid_7 Midasin AAA lid domain 3.0E-22 454 569
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.9E-06 636 682
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.3E-07 804 892
PF17865 AAA_lid_5 Midasin AAA lid domain 4.1E-31 906 1010
PF07726 AAA_3 ATPase family associated with various cellular activities (AAA) 4.4E-05 1083 1219
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.3E-21 1083 1218
PF17867 AAA_lid_7 Midasin AAA lid domain 3.1E-11 1230 1323
PF07728 AAA_5 AAA domain (dynein-related subfamily) 5.3E-08 1374 1419
PF07728 AAA_5 AAA domain (dynein-related subfamily) 4.5E-15 1470 1573
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.2E-05 1755 1799
PF07726 AAA_3 ATPase family associated with various cellular activities (AAA) 3.8E-10 1755 1894
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.0E-18 1755 1893
PF17867 AAA_lid_7 Midasin AAA lid domain 1.0E-12 1905 2002
Hirsu2|6237 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.8E-12 222 350
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 1.7E-04 523 591
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.2E-04 523 618
PF07728 AAA_5 AAA domain (dynein-related subfamily) 1.4E-04 523 634
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.9E-44 524 652
Hirsu2|6475 PF08740 BCS1_N BCS1 N terminal 1.8E-37 41 206
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.2E-18 244 372
Hirsu2|6491 PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.2E-21 75 189
Hirsu2|6650 PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.2E-11 117 250
PF17871 AAA_lid_9 AAA lid domain 2.2E-35 255 357
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 5.9E-43 511 683
PF07728 AAA_5 AAA domain (dynein-related subfamily) 2.7E-08 516 633
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.4E-05 518 611
PF10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 4.0E-24 690 769
Hirsu2|6745 PF03215 Rad17 Rad17 P-loop domain 3.0E-09 30 94
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 2.4E-05 40 90
PF13177 DNA_pol3_delta2 DNA polymerase III, delta subunit 5.6E-11 50 200
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-15 69 197
PF08542 Rep_fac_C Replication factor C C-terminal domain 7.4E-22 285 374
Hirsu2|7355 PF07728 AAA_5 AAA domain (dynein-related subfamily) 7.0E-06 181 250
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.5E-43 182 311
PF17862 AAA_lid_3 AAA+ lid domain 2.4E-10 334 377
PF01434 Peptidase_M41 Peptidase family M41 1.0E-53 392 571
Hirsu2|7510 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.1E-15 814 929
Hirsu2|7561 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.1E-17 537 654
Hirsu2|8376 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.8E-06 767 876
Hirsu2|8416 PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.4E-14 221 338
PF17871 AAA_lid_9 AAA lid domain 5.1E-32 362 462
PF00158 Sigma54_activat Sigma-54 interaction domain 2.2E-06 627 745
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.7E-44 630 791
PF07728 AAA_5 AAA domain (dynein-related subfamily) 9.3E-10 631 750
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.1E-09 632 766
Hirsu2|8486 PF08740 BCS1_N BCS1 N terminal 2.8E-53 57 260
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.5E-08 298 365
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.2E-05 408 452
Hirsu2|856 PF08740 BCS1_N BCS1 N terminal 1.6E-19 2 90
PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.5E-21 126 250
Hirsu2|8595 PF04212 MIT MIT (microtubule interacting and transport) domain 1.8E-16 7 71
PF05496 RuvB_N Holliday junction DNA helicase RuvB P-loop domain 8.2E-07 157 253
PF00004 AAA ATPase family associated with various cellular activities (AAA) 4.2E-41 164 292
PF17862 AAA_lid_3 AAA+ lid domain 2.7E-06 318 347
PF09336 Vps4_C Vps4 C terminal oligomerisation domain 1.8E-26 366 426
Hirsu2|8791 PF01695 IstB_IS21 IstB-like ATP binding protein 1.5E-05 609 705
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.4E-42 621 756
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 4.9E-05 621 719
PF17862 AAA_lid_3 AAA+ lid domain 2.6E-08 781 815
PF00004 AAA ATPase family associated with various cellular activities (AAA) 7.9E-05 924 1024
Hirsu2|9098 PF08740 BCS1_N BCS1 N terminal 1.8E-39 31 209
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.0E-15 245 369
Hirsu2|9465 PF08740 BCS1_N BCS1 N terminal 3.6E-42 85 287
PF00004 AAA ATPase family associated with various cellular activities (AAA) 8.8E-09 325 395
PF00004 AAA ATPase family associated with various cellular activities (AAA) 5.2E-06 473 525
Hirsu2|9658 PF09262 PEX-1N Peroxisome biogenesis factor 1, N-terminal 8.0E-28 135 226
PF12775 AAA_7 P-loop containing dynein motor region 5.2E-06 537 623
PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.2E-10 547 681
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.3E-43 880 1006
PF17862 AAA_lid_3 AAA+ lid domain 7.6E-09 1040 1072
Hirsu2|9906 PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 1.4E-23 8 257
PF00004 AAA ATPase family associated with various cellular activities (AAA) 3.8E-22 485 623
PF07724 AAA_2 AAA domain (Cdc48 subfamily) 1.6E-04 485 607
PF07728 AAA_5 AAA domain (dynein-related subfamily) 8.7E-08 485 620
PF05362 Lon_C Lon protease (S16) C-terminal proteolytic domain 3.4E-67 711 906
PF13541 ChlI Subunit ChlI of Mg-chelatase 7.1E-07 757 886

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