© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 327 |
|---|---|
| Total assembly length (Mbp) | 37.12 |
| Assembly GC content (%) | 49.52 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 29 |
| N50 length (bp) | 378684 |
| Total repeats (#) | 12850 |
| Repetitive content (bp, %) | 1330991 (3.59%) |
| Genes | 11468 |
| Gene length (median) | 1428 |
| Transcript length (median) | 1254 |
| Exon length (median) | 227 |
| CDS length (median) | 1254 |
| Protein length (median) | 418 |
| Spliced genes (total, %) | 9263 (80.77%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 308.98 |
| Coding content of assembly (bp, %) | 17158341 (46.23%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4092 |
| Genes with PFAM (total, %) | 8748 (76.28%) |
| Genes with GO (total, %) | 5658 (49.34%) |
| Genes with signalP (total, %) | 1000 (8.72%) |
| Genes with TMHMM (total, %) | 2416 (21.07%) |
| Genes annotated as TF (total, %) | 554 (4.83%) |
| Genes annotated as MEROPS protease (total, %) | 377 (3.29%) |
| Genes annotated as CAZyme (total, %) | 499 (4.35%) |
| Secondary metabolism gene cluster | 76 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 98.97% (Single-copy: 97.93%, Duplicated: 1.03%), Fragmented: 1.03%, Missing: 0.0% |