© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 425 |
|---|---|
| Total assembly length (Mbp) | 35.52 |
| Assembly GC content (%) | 49.7 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 45 |
| N50 length (bp) | 242944 |
| Total repeats (#) | 12365 |
| Repetitive content (bp, %) | 659588 (1.86%) |
| Genes | 11159 |
| Gene length (median) | 1437 |
| Transcript length (median) | 1260 |
| Exon length (median) | 227 |
| CDS length (median) | 1260 |
| Protein length (median) | 420 |
| Spliced genes (total, %) | 9065 (81.23%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 314.17 |
| Coding content of assembly (bp, %) | 16817310 (47.35%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4091 |
| Genes with PFAM (total, %) | 8653 (77.54%) |
| Genes with GO (total, %) | 5591 (50.1%) |
| Genes with signalP (total, %) | 1003 (8.99%) |
| Genes with TMHMM (total, %) | 2361 (21.16%) |
| Genes annotated as TF (total, %) | 552 (4.95%) |
| Genes annotated as MEROPS protease (total, %) | 369 (3.31%) |
| Genes annotated as CAZyme (total, %) | 495 (4.44%) |
| Secondary metabolism gene cluster | 77 |
| CEGMA completeness (%) | 99.13 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.31% (Single-copy: 98.62%, Duplicated: 0.69%), Fragmented: 0.69%, Missing: 0.0% |