© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 203 |
|---|---|
| Total assembly length (Mbp) | 35.66 |
| Assembly GC content (%) | 49.31 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 39 |
| N50 length (bp) | 296363 |
| Total repeats (#) | 12051 |
| Repetitive content (bp, %) | 575506 (1.61%) |
| Genes | 11053 |
| Gene length (median) | 1446 |
| Transcript length (median) | 1266 |
| Exon length (median) | 229 |
| CDS length (median) | 1266 |
| Protein length (median) | 422 |
| Spliced genes (total, %) | 8984 (81.28%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 310.0 |
| Coding content of assembly (bp, %) | 16769781 (47.03%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4083 |
| Genes with PFAM (total, %) | 8627 (78.05%) |
| Genes with GO (total, %) | 5585 (50.53%) |
| Genes with signalP (total, %) | 991 (8.97%) |
| Genes with TMHMM (total, %) | 2328 (21.06%) |
| Genes annotated as TF (total, %) | 542 (4.9%) |
| Genes annotated as MEROPS protease (total, %) | 374 (3.38%) |
| Genes annotated as CAZyme (total, %) | 489 (4.42%) |
| Secondary metabolism gene cluster | 79 |
| CEGMA completeness (%) | 99.13 |
| BUSCO2 completeness (fungi_odb9) | Complete: 98.28% (Single-copy: 97.59%, Duplicated: 0.69%), Fragmented: 1.38%, Missing: 0.34% |