© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS72_1|g999.t1 |
| Gene name | |
| Location | scaffold_004:578639..579431 |
| Strand | - |
| Gene length (bp) | 792 |
| Transcript length (bp) | 591 |
| Coding sequence length (bp) | 591 |
| Protein length (aa) | 197 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04420 | CHD5 | CHD5-like protein | 8.6E-64 | 7 | 165 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0071816 | tail-anchored membrane protein insertion into ER membrane | Yes |
| GO:0051641 | cellular localization | No |
| GO:0009987 | cellular process | No |
| GO:0072657 | protein localization to membrane | No |
| GO:0045048 | protein insertion into ER membrane | No |
| GO:0051668 | localization within membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0051205 | protein insertion into membrane | No |
| GO:0090150 | establishment of protein localization to membrane | No |
| GO:0033036 | macromolecule localization | No |
| GO:0008104 | protein localization | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g999.t1 MLSLLWSVFLVHVAIYLVNTIGASTIDNLLWLLYLKVPTSTSKKYKEQNRLKREVVQLKRDMNNTSSQDEFAKWA KLRRKHDKTMEEYEAINKQLVSQKTSFDWGVKIVRWFGTSGLKFFLQFWYSKTPVFHLPEGWLPYYVAWLLSFPR APMGSVSIQIWSNVCATAITTMAEVVTAVLLQRATATAAPAAKKTQ* |
| Coding | >Ani_SJS72_1|g999.t1 ATGTTGTCGCTCCTGTGGTCGGTTTTTCTTGTCCATGTCGCCATTTATTTGGTTAATACCATTGGCGCTAGCACC ATTGATAATCTGCTATGGCTCCTCTACCTGAAAGTCCCGACCTCCACGTCGAAGAAATACAAAGAACAAAACCGA CTCAAGCGCGAGGTTGTCCAGCTGAAGCGGGACATGAACAACACCAGCTCACAGGATGAGTTTGCGAAATGGGCG AAACTCCGACGGAAACATGATAAGACCATGGAGGAATATGAGGCGATAAACAAACAACTCGTTTCACAGAAAACC TCTTTCGACTGGGGCGTCAAAATCGTTCGCTGGTTCGGTACATCTGGTCTCAAGTTCTTCCTGCAATTCTGGTAC TCGAAAACGCCTGTCTTCCATCTGCCGGAGGGTTGGCTTCCTTACTACGTGGCGTGGCTGCTGTCGTTCCCCCGT GCGCCTATGGGGTCGGTGAGCATCCAGATTTGGAGTAATGTTTGTGCGACGGCGATTACGACTATGGCGGAGGTG GTGACGGCTGTTCTGTTGCAGAGGGCTACTGCTACTGCTGCGCCTGCTGCGAAGAAGACACAATGA |
| Transcript | >Ani_SJS72_1|g999.t1 ATGTTGTCGCTCCTGTGGTCGGTTTTTCTTGTCCATGTCGCCATTTATTTGGTTAATACCATTGGCGCTAGCACC ATTGATAATCTGCTATGGCTCCTCTACCTGAAAGTCCCGACCTCCACGTCGAAGAAATACAAAGAACAAAACCGA CTCAAGCGCGAGGTTGTCCAGCTGAAGCGGGACATGAACAACACCAGCTCACAGGATGAGTTTGCGAAATGGGCG AAACTCCGACGGAAACATGATAAGACCATGGAGGAATATGAGGCGATAAACAAACAACTCGTTTCACAGAAAACC TCTTTCGACTGGGGCGTCAAAATCGTTCGCTGGTTCGGTACATCTGGTCTCAAGTTCTTCCTGCAATTCTGGTAC TCGAAAACGCCTGTCTTCCATCTGCCGGAGGGTTGGCTTCCTTACTACGTGGCGTGGCTGCTGTCGTTCCCCCGT GCGCCTATGGGGTCGGTGAGCATCCAGATTTGGAGTAATGTTTGTGCGACGGCGATTACGACTATGGCGGAGGTG GTGACGGCTGTTCTGTTGCAGAGGGCTACTGCTACTGCTGCGCCTGCTGCGAAGAAGACACAATGA |
| Gene | >Ani_SJS72_1|g999.t1 ATGTTGTCGCTCCTGTGGTCGGTTTTTCTTGTCCATGTCGCCATTTATTTGGTTAATACCATTGGCGCTAGCACC ATTGATAATCTGGTATGTTTTGTCTGGCGGCCTTGTAGCTGTCATGTCTTGAGCTATTCTCTCGCACACCAAATT TCAGATTGTAAGGTAAAGCTAACAAGTATAAAATAGCTATGGCTCCTCTACCTGAAAGTCCCGACCTCCACGTCG AAGAAATACAAAGAACAAAACCGACTCAAGCGCGAGGTTGTCCAGCTGAAGCGGGACATGAACAACACCAGCTCA CAGGATGAGTTTGCGAAATGGGCGAAACTCCGACGGAAACATGATAAGACCATGGAGGAATATGAGGCGATAAGT ACGTTGAATCCCGATCGCAGTTACAGTCTACCTATATAGGCATCGGGGGTTTGGGGAGAATAGCTGGTTGAAGAG AGAGCTAACAAAAGCGGTTCAACAGACAAACAACTCGTTTCACAGAAAACCTCTTTCGACTGGGGCGTCAAAATC GTTCGCTGGTTCGGTACATCTGGTCTCAAGTTCTTCCTGCAATTCTGGTACTCGAAAACGCCTGTCTTCCATCTG CCGGAGGGTTGGCTTCCTTACTACGTGGCGTGGCTGCTGTCGTTCCCCCGTGCGCCTATGGGGTCGGTGAGCATC CAGATTTGGAGTAATGTTTGTGCGACGGCGATTACGACTATGGCGGAGGTGGTGACGGCTGTTCTGTTGCAGAGG GCTACTGCTACTGCTGCGCCTGCTGCGAAGAAGACACAATGA |