Protein ID | Ani_SJS72_1|g9521.t1 |
Gene name | |
Location | scaffold_104:78449..80582 |
Strand | + |
Gene length (bp) | 2133 |
Transcript length (bp) | 1914 |
Coding sequence length (bp) | 1914 |
Protein length (aa) | 638 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF08016 | PKD_channel | Polycystin cation channel | 7.2E-06 | 265 | 462 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 12 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 231 | 253 | 22 |
2 | 268 | 287 | 19 |
3 | 294 | 316 | 22 |
4 | 345 | 367 | 22 |
5 | 374 | 396 | 22 |
6 | 434 | 456 | 22 |
7 | 490 | 512 | 22 |
8 | 522 | 541 | 19 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS72_1|g9521.t1 MGHWRDIFNTDTGRTRHRLHMEQHRLLPAFTDDQVSSTLPSKEVTKVALRLKYQLEQVIPCELDESDIVSPNSRV ITKNVIQTARLAGGEDLQACVPFCLLVCLRWFKLQAEEELWDSDLHERRALACEVIAKRIIETEEDQDNLLINVL LKRYSIFIDGGETMPVNVIERAVDLHALRVIGSSGYQKCIRYLWNGWFCQQEGNPTNFVPYLERDNTSFSVHFHP DRMRTPLYQNICQIFFSLVYLGLYTQVINTVNPTGDLDAVEGILYVMTLAFICDEVAKLWKVGWHYLDFWNAFNS TLYAILAVSFFLRVAALAHSQSVHDAERQSLNELSYNFLAFAGPMFWMRMMLYLDSFRFFGAMFVVLRVMMKESL IFFALLFVVLAGFFQAFIGMAQVDDDTPIVRGIVQGMANSVMQSPEFSTFEDFAFPFGIILYYVFNFVVMTILLN ILIALYNSAYEDISGNAIDEYMAIFAQKTMQFVRAPDENVFIPPFNLLEIIFLVLPFEWWLPRQYYAKLNDVIMG IIYSPILVITAFFEVRDARRIRWNRRRGEEDDDNVQEWEHAAEEVDFDLDDSWTQTVRETTPNVQIDGTTLEIIQ LKEQVMSLTETVSVLAEERAGKSMMLGESSSTIVDPE* |
Coding | >Ani_SJS72_1|g9521.t1 ATGGGCCACTGGCGAGATATCTTCAACACCGACACGGGGCGGACCCGCCACCGCCTGCATATGGAACAACACCGA TTGCTTCCTGCCTTTACAGATGACCAAGTCTCTTCTACTCTTCCCTCTAAGGAGGTGACAAAAGTCGCTCTTCGT CTGAAATATCAGCTGGAGCAAGTCATCCCTTGCGAGCTAGATGAGAGTGATATTGTCAGTCCGAATAGTCGGGTC ATCACCAAGAATGTAATTCAGACAGCCCGTCTAGCAGGAGGTGAGGACCTGCAGGCCTGTGTTCCATTTTGTCTA CTCGTTTGTTTGCGTTGGTTCAAGCTTCAGGCCGAGGAAGAGCTCTGGGATTCCGATTTACATGAGCGCCGAGCC CTTGCTTGTGAGGTCATAGCGAAGAGGATCATTGAAACCGAGGAAGATCAGGACAATTTACTCATCAATGTTCTC CTTAAGCGGTATTCGATCTTCATCGATGGTGGGGAGACTATGCCAGTAAATGTCATCGAGCGCGCTGTTGATCTG CATGCTTTGAGGGTCATTGGCTCCTCGGGTTATCAAAAGTGTATCAGATACCTGTGGAATGGATGGTTCTGCCAG CAAGAGGGCAATCCAACCAATTTTGTCCCTTACCTGGAGAGGGACAACACGAGTTTTTCGGTTCACTTCCACCCA GATCGGATGAGGACGCCTCTATATCAGAACATCTGCCAGATCTTCTTCTCCCTCGTCTATCTCGGACTCTATACT CAGGTTATCAACACAGTAAATCCCACCGGTGACCTAGATGCCGTCGAGGGGATCCTCTATGTGATGACCCTTGCC TTCATCTGCGACGAAGTAGCCAAACTCTGGAAGGTCGGCTGGCACTACTTAGACTTCTGGAACGCCTTTAACTCT ACGCTCTACGCAATTCTCGCCGTGTCTTTCTTCCTGCGTGTTGCTGCCTTGGCGCATTCTCAATCTGTTCACGAT GCGGAAAGACAAAGTCTGAATGAATTGAGCTACAACTTTCTGGCATTTGCGGGGCCCATGTTCTGGATGCGCATG ATGCTCTATCTCGATTCCTTCCGCTTTTTCGGTGCTATGTTCGTGGTTTTGAGGGTTATGATGAAGGAGAGCTTG ATTTTCTTTGCCCTTCTCTTTGTCGTTCTTGCGGGCTTTTTCCAGGCATTCATCGGCATGGCTCAAGTAGATGAC GATACTCCCATCGTAAGAGGTATTGTGCAAGGAATGGCGAACAGTGTCATGCAGAGCCCAGAATTCAGCACGTTT GAAGACTTCGCCTTTCCGTTCGGAATCATCCTCTACTACGTTTTCAACTTCGTTGTAATGACCATTCTGCTGAAT ATCCTGATCGCGCTCTACAACAGTGCTTACGAGGATATCTCGGGAAATGCTATTGATGAGTACATGGCCATCTTC GCTCAGAAAACCATGCAGTTCGTCCGCGCGCCGGATGAGAATGTCTTTATACCTCCCTTCAATCTGTTGGAGATC ATCTTCTTAGTGCTCCCGTTTGAATGGTGGCTACCAAGGCAATACTACGCCAAGCTCAACGATGTCATCATGGGC ATTATATACTCACCCATCCTCGTTATCACGGCGTTCTTCGAGGTGCGCGACGCAAGACGCATCAGGTGGAACCGT CGGCGCGGTGAAGAGGACGATGATAACGTGCAGGAATGGGAACACGCCGCCGAGGAAGTCGACTTTGATCTCGAC GATAGCTGGACGCAGACTGTGCGGGAAACCACCCCGAATGTTCAAATTGACGGCACCACGTTGGAGATCATACAA CTGAAGGAACAGGTCATGTCACTTACCGAGACAGTCAGTGTATTGGCTGAAGAGAGGGCTGGGAAGAGTATGATG CTTGGGGAGTCAAGCTCAACCATCGTGGATCCGGAATGA |
Transcript | >Ani_SJS72_1|g9521.t1 ATGGGCCACTGGCGAGATATCTTCAACACCGACACGGGGCGGACCCGCCACCGCCTGCATATGGAACAACACCGA TTGCTTCCTGCCTTTACAGATGACCAAGTCTCTTCTACTCTTCCCTCTAAGGAGGTGACAAAAGTCGCTCTTCGT CTGAAATATCAGCTGGAGCAAGTCATCCCTTGCGAGCTAGATGAGAGTGATATTGTCAGTCCGAATAGTCGGGTC ATCACCAAGAATGTAATTCAGACAGCCCGTCTAGCAGGAGGTGAGGACCTGCAGGCCTGTGTTCCATTTTGTCTA CTCGTTTGTTTGCGTTGGTTCAAGCTTCAGGCCGAGGAAGAGCTCTGGGATTCCGATTTACATGAGCGCCGAGCC CTTGCTTGTGAGGTCATAGCGAAGAGGATCATTGAAACCGAGGAAGATCAGGACAATTTACTCATCAATGTTCTC CTTAAGCGGTATTCGATCTTCATCGATGGTGGGGAGACTATGCCAGTAAATGTCATCGAGCGCGCTGTTGATCTG CATGCTTTGAGGGTCATTGGCTCCTCGGGTTATCAAAAGTGTATCAGATACCTGTGGAATGGATGGTTCTGCCAG CAAGAGGGCAATCCAACCAATTTTGTCCCTTACCTGGAGAGGGACAACACGAGTTTTTCGGTTCACTTCCACCCA GATCGGATGAGGACGCCTCTATATCAGAACATCTGCCAGATCTTCTTCTCCCTCGTCTATCTCGGACTCTATACT CAGGTTATCAACACAGTAAATCCCACCGGTGACCTAGATGCCGTCGAGGGGATCCTCTATGTGATGACCCTTGCC TTCATCTGCGACGAAGTAGCCAAACTCTGGAAGGTCGGCTGGCACTACTTAGACTTCTGGAACGCCTTTAACTCT ACGCTCTACGCAATTCTCGCCGTGTCTTTCTTCCTGCGTGTTGCTGCCTTGGCGCATTCTCAATCTGTTCACGAT GCGGAAAGACAAAGTCTGAATGAATTGAGCTACAACTTTCTGGCATTTGCGGGGCCCATGTTCTGGATGCGCATG ATGCTCTATCTCGATTCCTTCCGCTTTTTCGGTGCTATGTTCGTGGTTTTGAGGGTTATGATGAAGGAGAGCTTG ATTTTCTTTGCCCTTCTCTTTGTCGTTCTTGCGGGCTTTTTCCAGGCATTCATCGGCATGGCTCAAGTAGATGAC GATACTCCCATCGTAAGAGGTATTGTGCAAGGAATGGCGAACAGTGTCATGCAGAGCCCAGAATTCAGCACGTTT GAAGACTTCGCCTTTCCGTTCGGAATCATCCTCTACTACGTTTTCAACTTCGTTGTAATGACCATTCTGCTGAAT ATCCTGATCGCGCTCTACAACAGTGCTTACGAGGATATCTCGGGAAATGCTATTGATGAGTACATGGCCATCTTC GCTCAGAAAACCATGCAGTTCGTCCGCGCGCCGGATGAGAATGTCTTTATACCTCCCTTCAATCTGTTGGAGATC ATCTTCTTAGTGCTCCCGTTTGAATGGTGGCTACCAAGGCAATACTACGCCAAGCTCAACGATGTCATCATGGGC ATTATATACTCACCCATCCTCGTTATCACGGCGTTCTTCGAGGTGCGCGACGCAAGACGCATCAGGTGGAACCGT CGGCGCGGTGAAGAGGACGATGATAACGTGCAGGAATGGGAACACGCCGCCGAGGAAGTCGACTTTGATCTCGAC GATAGCTGGACGCAGACTGTGCGGGAAACCACCCCGAATGTTCAAATTGACGGCACCACGTTGGAGATCATACAA CTGAAGGAACAGGTCATGTCACTTACCGAGACAGTCAGTGTATTGGCTGAAGAGAGGGCTGGGAAGAGTATGATG CTTGGGGAGTCAAGCTCAACCATCGTGGATCCGGAATGA |
Gene | >Ani_SJS72_1|g9521.t1 ATGGGCCACTGGCGAGATATCTTCAACACCGACACGGGGCGGACCCGCCACCGCCTGCATATGGAACAACACCGA TGTACGTCATCTGATTGCGGAGCCGCTCTACAACGTGCTCTCGGCTAACAGGGTTCATAGTGCTTCCTGCCTTTA CAGATGACCAAGTCTCTTCTACTCTTCCCTCTAAGGAGGTGACAAAAGTCGCTCTTCGTCTGAAATATCAGCTGG AGCAAGTCATCCCTTGCGAGCTAGATGAGAGTGATATTGTCAGTCCGAATAGTCGGGTCATCACCAAGAATGTAA TTCAGACAGCCCGTCTAGCAGGAGGTGAGGACCTGCAGGCCTGTGTTCCATTTTGTCTACTCGTTTGTTTGCGTT GGTTCAAGCTTCAGGCCGAGGAAGAGCTCTGGGATTCCGATTTACATGAGCGCCGAGCCCTTGCTTGTGAGGTCA TAGCGAAGAGGATGTAGTACACCCTTTCCTAACATTATCATGGAGCCTTTGCTGACTAAATTGATATAGCATTGA AACCGAGGAAGATCAGGACAATTTACTCATCAATGTTCTCCTTAAGCGGTATTCGATCTTCATCGATGGTGGGGA GACTATGCCAGTAAATGTCATCGAGCGCGCTGTTGATCTGCATGCTTTGAGGGTCATTGGCTCCTCGGGTTATCA AAAGTGTATCAGATACCTGTGGAATGGATGGTTCTGCCAGCAAGAGGGCAATCCAACCAATTTTGTCCCTTACCT GGAGAGGGACAACACGAGTTTTTCGGTTCACTTCCACCCAGATCGGATGAGGACGCCTCTATATCAGAACATCTG CCAGATCTTCTTCTCCCTCGTCTATCTCGGACTCTATACTCAGGTTATCAACACAGTAAATCCCACCGGTGACCT AGATGCCGTCGAGGGGATCCTCTATGTGATGACCCTTGCCTTCATCTGCGACGAAGTAGCCAAACTCTGGAAGGT CGGCTGGCACTACTTAGACTTCTGGAACGCCTTTAACTCTACGCTCTACGCAATTCTCGCCGTGTCTTTCTTCCT GCGTGTTGCTGCCTTGGCGCATTCTCAATCTGTTCACGATGCGGAAAGACAAAGTCTGAATGAATTGAGCTACAA CTTTCTGGCATTTGCGGGGCCCATGTTCTGGATGCGCATGATGCTCTATCTCGATTCCTTCCGCTTTTTCGGTGC TATGTTCGTGGTTTTGAGGGTTATGATGAAGGAGAGCTTGATTTTCTTTGCCCTTCTCTTTGTCGTTCTTGCGGG CTTTTTCCAGGCATTCATCGGCATGGCTCAAGTAGATGACGATACTCCCATCGTAAGAGGTATTGTGCAAGGAAT GGCGAACAGTGTCATGCAGAGCCCAGAATTCAGCACGTTTGAAGACTTCGCCTTTCCGTTCGGAATCATCCTCTA CTACGTTTTCAACTTCGTTGTAATGACCAGTGGGTATCCCTTGGGTATAATATTTGGTTGCCAGGCTGATTCGGT CCGCTCTAGTTCTGCTGAATATCCTGATCGCGCTCTACAACAGTGCTTACGAGGATATCTCGGGAAATGCTATTG ATGAGTACATGGCCATCTTCGCTCAGAAAACCATGCAGTTCGTCCGCGCGCCGGATGAGAATGTCTTTATACCTC GTATGTTTAGCTTACTATTTCTGATAGCCATGACTAACGCCTAAACTAGCCTTCAATCTGTTGGAGATCATCTTC TTAGTGCTCCCGTTTGAATGGTGGCTACCAAGGCAATACTACGCCAAGCTCAACGATGTCATCATGGGCATTATA TACTCACCCATCCTCGTTATCACGGCGTTCTTCGAGGTGCGCGACGCAAGACGCATCAGGTGGAACCGTCGGCGC GGTGAAGAGGACGATGATAACGTGCAGGAATGGGAACACGCCGCCGAGGAAGTCGACTTTGATCTCGACGATAGC TGGACGCAGACTGTGCGGGAAACCACCCCGAATGTTCAAATTGACGGCACCACGTTGGAGATCATACAACTGAAG GAACAGGTCATGTCACTTACCGAGACAGTCAGTGTATTGGCTGAAGAGAGGGCTGGGAAGAGTATGATGCTTGGG GAGTCAAGCTCAACCATCGTGGATCCGGAATGA |