Protein ID | Ani_SJS72_1|g9484.t1 |
Gene name | |
Location | scaffold_103:86545..87762 |
Strand | + |
Gene length (bp) | 1217 |
Transcript length (bp) | 1149 |
Coding sequence length (bp) | 1149 |
Protein length (aa) | 383 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00544 | Pectate_lyase_4 | Pectate lyase | 2.2E-10 | 123 | 297 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 22 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS72_1|g9484.t1 MRPDLLSTFVTVMAFAHHAEAAQSSIVSGSAPGFAAGVTGGGDATPVYPTTIDELKEYLTSSSPQNIVIEGTFDF VGSEGTKTYQACNIYDCTPDNGGQAILNTLGGCGDTSTYDVTIDVAGYQGINVASDKTLVGKGTGAVLNGKGLRF VGVSNIIIQNIEITNLNPKYVWGGDALTFSDTNQIWIDHVTTSSLGRQHYSFGQESDNAITISNSFINGKTDYSA TCDGHTYWGLELVGSSDQITFYKNYVYYTSGRSPALSGNTLFHAVNSVWADNSGHAIEGTDNGMGLFEGNVFNNV PTIVQSGFVGQLFSSESANLSQCETSLGRDCVTNAYTSSGSFSYDDDGFFVDFENLPIVSAASASSIASTVPSDA GNTLSST* |
Coding | >Ani_SJS72_1|g9484.t1 ATGAGGCCCGATCTTCTATCTACCTTCGTGACCGTGATGGCCTTCGCGCATCATGCCGAAGCAGCGCAGTCTTCT ATTGTCTCGGGGAGTGCTCCCGGCTTCGCAGCGGGCGTGACGGGAGGAGGCGACGCGACCCCTGTCTATCCGACA ACTATCGACGAGCTGAAAGAGTACCTCACCTCCTCTTCGCCTCAGAACATTGTTATCGAGGGTACTTTCGACTTT GTCGGTTCTGAGGGCACCAAAACTTATCAGGCTTGTAACATCTATGACTGCACACCGGATAATGGTGGACAGGCT ATACTTAACACGCTTGGGGGATGCGGGGACACCTCGACATATGACGTGACCATCGACGTTGCAGGATACCAGGGT ATCAATGTCGCATCAGACAAAACTCTGGTCGGTAAAGGGACAGGCGCTGTGCTCAATGGCAAGGGCCTGCGGTTC GTGGGCGTCTCCAACATCATCATTCAGAACATCGAAATCACCAACCTCAACCCGAAGTATGTTTGGGGAGGAGAT GCTCTTACGTTCTCCGACACTAATCAGATCTGGATCGACCATGTCACCACCTCCTCACTAGGCCGCCAGCACTAT AGTTTTGGCCAGGAGAGTGACAACGCCATCACCATCTCCAATAGCTTCATCAACGGGAAGACTGACTACTCTGCT ACTTGTGATGGACACACGTACTGGGGCCTCGAGCTGGTCGGCTCCAGTGACCAAATCACCTTCTACAAAAACTAC GTCTACTACACCTCCGGGCGCAGTCCCGCTCTCAGTGGCAATACACTCTTCCACGCAGTCAACAGTGTCTGGGCT GATAACAGCGGTCACGCCATCGAAGGGACTGACAACGGCATGGGCCTTTTTGAGGGGAACGTGTTCAACAATGTC CCCACCATTGTTCAGAGCGGCTTTGTCGGTCAGCTATTCAGCTCCGAGTCGGCCAATCTTAGCCAATGCGAGACG TCCTTGGGAAGAGACTGTGTGACCAATGCTTACACCAGCTCTGGTTCCTTCAGTTATGATGACGATGGATTCTTT GTTGACTTTGAGAACCTGCCCATTGTATCTGCTGCATCTGCATCTTCGATTGCGAGTACTGTTCCTTCGGATGCT GGTAATACCCTGAGCAGCACCTAA |
Transcript | >Ani_SJS72_1|g9484.t1 ATGAGGCCCGATCTTCTATCTACCTTCGTGACCGTGATGGCCTTCGCGCATCATGCCGAAGCAGCGCAGTCTTCT ATTGTCTCGGGGAGTGCTCCCGGCTTCGCAGCGGGCGTGACGGGAGGAGGCGACGCGACCCCTGTCTATCCGACA ACTATCGACGAGCTGAAAGAGTACCTCACCTCCTCTTCGCCTCAGAACATTGTTATCGAGGGTACTTTCGACTTT GTCGGTTCTGAGGGCACCAAAACTTATCAGGCTTGTAACATCTATGACTGCACACCGGATAATGGTGGACAGGCT ATACTTAACACGCTTGGGGGATGCGGGGACACCTCGACATATGACGTGACCATCGACGTTGCAGGATACCAGGGT ATCAATGTCGCATCAGACAAAACTCTGGTCGGTAAAGGGACAGGCGCTGTGCTCAATGGCAAGGGCCTGCGGTTC GTGGGCGTCTCCAACATCATCATTCAGAACATCGAAATCACCAACCTCAACCCGAAGTATGTTTGGGGAGGAGAT GCTCTTACGTTCTCCGACACTAATCAGATCTGGATCGACCATGTCACCACCTCCTCACTAGGCCGCCAGCACTAT AGTTTTGGCCAGGAGAGTGACAACGCCATCACCATCTCCAATAGCTTCATCAACGGGAAGACTGACTACTCTGCT ACTTGTGATGGACACACGTACTGGGGCCTCGAGCTGGTCGGCTCCAGTGACCAAATCACCTTCTACAAAAACTAC GTCTACTACACCTCCGGGCGCAGTCCCGCTCTCAGTGGCAATACACTCTTCCACGCAGTCAACAGTGTCTGGGCT GATAACAGCGGTCACGCCATCGAAGGGACTGACAACGGCATGGGCCTTTTTGAGGGGAACGTGTTCAACAATGTC CCCACCATTGTTCAGAGCGGCTTTGTCGGTCAGCTATTCAGCTCCGAGTCGGCCAATCTTAGCCAATGCGAGACG TCCTTGGGAAGAGACTGTGTGACCAATGCTTACACCAGCTCTGGTTCCTTCAGTTATGATGACGATGGATTCTTT GTTGACTTTGAGAACCTGCCCATTGTATCTGCTGCATCTGCATCTTCGATTGCGAGTACTGTTCCTTCGGATGCT GGTAATACCCTGAGCAGCACCTAA |
Gene | >Ani_SJS72_1|g9484.t1 ATGAGGCCCGATCTTCTATCTACCTTCGTGACCGTGATGGCCTTCGCGCATCATGCCGAAGCAGCGCAGTCTTCT ATTGTCTCGGGGAGTGCTCCCGGCTTCGCAGCGGGCGTGACGGGAGGAGGCGACGCGACCCCTGTCTATCCGACA ACTATCGACGAGCTGAAAGAGTACCTCACCTCCTCTTCGCCTCAGAACATTGTTATCGAGGGTACTTTCGACTTT GTCGGTTCTGAGGGCACCAAAACTTATCAGGCTTGTAACATCTATGACTGCACACCGGATAATGGTGGACAGGCT ATACTTAACACGCTTGGGGGATGCGGGGACACCTCGACATATGACGTGACCATCGACGTTGCAGGATACCAGGGT ATCAATGTCGCATCAGACAAAACTCTGGTCGGTAAAGGGACAGGCGCTGTGCTCAATGGCAAGGGCCTGCGGTTC GTGGGCGTCTCCAACATCATCATTCAGAACATCGAAATCACCAACCTCAACCCGAAGTATGTTTGGGGAGGAGAT GCTCTTACGTTCTCCGACACTAATCAGATCTGGATCGACCATGTCACCACCTCCTCACTAGGCCGCCAGCACTAT AGTTTTGGCCAGGAGAGTGACAACGCCATCACCATCTCCAATAGCTTCATCAACGGGAAGACTGACTACTCTGCT ACTTGTGATGGACACACGTACTGGGGCCTCGAGCTGGTCGGCTCCAGTGACCAAATCACCTTCTACAGTGAGTTT CAACTGGCTGGGTCCGCATCCTGATAGTTGAACGTGCAGATAAACTAAACGCAAAATTAGAAAACTACGTCTACT ACACCTCCGGGCGCAGTCCCGCTCTCAGTGGCAATACACTCTTCCACGCAGTCAACAGTGTCTGGGCTGATAACA GCGGTCACGCCATCGAAGGGACTGACAACGGCATGGGCCTTTTTGAGGGGAACGTGTTCAACAATGTCCCCACCA TTGTTCAGAGCGGCTTTGTCGGTCAGCTATTCAGCTCCGAGTCGGCCAATCTTAGCCAATGCGAGACGTCCTTGG GAAGAGACTGTGTGACCAATGCTTACACCAGCTCTGGTTCCTTCAGTTATGATGACGATGGATTCTTTGTTGACT TTGAGAACCTGCCCATTGTATCTGCTGCATCTGCATCTTCGATTGCGAGTACTGTTCCTTCGGATGCTGGTAATA CCCTGAGCAGCACCTAA |