© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g9275.t1 |
| Gene name | |
| Location | scaffold_098:8182..9100 |
| Strand | + |
| Gene length (bp) | 918 |
| Transcript length (bp) | 642 |
| Coding sequence length (bp) | 642 |
| Protein length (aa) | 214 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00810 | ER_lumen_recept | ER lumen protein retaining receptor | 1.8E-56 | 28 | 170 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046923 | ER retention sequence binding | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0006621 | protein retention in ER lumen | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051651 | maintenance of location in cell | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| GO:0005048 | signal sequence binding | No |
| GO:0072595 | maintenance of protein localization in organelle | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005488 | binding | No |
| GO:0051235 | maintenance of location | No |
| GO:0003674 | molecular_function | No |
| GO:0009987 | cellular process | No |
| GO:0042277 | peptide binding | No |
| GO:0035437 | maintenance of protein localization in endoplasmic reticulum | No |
| GO:0033218 | amide binding | No |
| GO:0005575 | cellular_component | No |
| GO:0032507 | maintenance of protein location in cell | No |
| GO:0045185 | maintenance of protein location | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 58 | 80 | 22 |
| 2 | 93 | 110 | 17 |
| 3 | 120 | 139 | 19 |
| 4 | 152 | 169 | 17 |
| 5 | 179 | 201 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g9275.t1 MNIFRLLADFSHLASIFILLQKMKSSSSCSGLSFKSQALYLMVFVTRYLDLFWAFTDSFYNTTFKILFIGSSAYI IYLMLNDYKPTHDPNTDTFKVQYLLGFSALLALLFPHDYSVSEILWTFSIWLESVAILPQLFMLQRTGEADTITT HYLFALGLYRALYIPNWIYRYFAESHFQPIPVVAGIIQTLLYSDFFYIYYTKVMKGKKFSLPV* |
| Coding | >Ani_SJS72_1|g9275.t1 ATGAATATCTTCAGGTTATTAGCCGACTTTTCCCATCTTGCGTCTATATTCATATTATTGCAGAAGATGAAGTCT TCAAGTAGTTGCTCAGGGCTTTCATTCAAGTCCCAGGCGCTATATTTGATGGTTTTTGTAACGCGTTATCTTGAT TTATTCTGGGCTTTCACGGACTCTTTCTATAATACGACTTTTAAAATCCTGTTCATCGGCTCGTCAGCTTATATC ATCTACCTCATGCTCAACGACTATAAGCCAACGCATGACCCCAACACTGATACCTTTAAAGTGCAGTATCTCCTC GGGTTCAGTGCTTTGTTGGCTCTCCTTTTCCCGCACGACTATAGCGTCTCAGAGATTCTTTGGACGTTCTCTATA TGGCTCGAGTCCGTGGCTATTTTGCCCCAGCTTTTCATGCTTCAGCGCACTGGGGAGGCGGACACCATAACAACG CATTATCTTTTCGCTTTGGGATTGTATCGTGCCCTTTACATCCCCAATTGGATTTATCGCTATTTCGCAGAGAGC CACTTTCAGCCTATCCCTGTTGTAGCCGGTATCATCCAGACACTCTTATATTCTGATTTCTTTTATATCTATTAC ACCAAGGTTATGAAGGGTAAGAAGTTCTCATTGCCTGTTTAA |
| Transcript | >Ani_SJS72_1|g9275.t1 ATGAATATCTTCAGGTTATTAGCCGACTTTTCCCATCTTGCGTCTATATTCATATTATTGCAGAAGATGAAGTCT TCAAGTAGTTGCTCAGGGCTTTCATTCAAGTCCCAGGCGCTATATTTGATGGTTTTTGTAACGCGTTATCTTGAT TTATTCTGGGCTTTCACGGACTCTTTCTATAATACGACTTTTAAAATCCTGTTCATCGGCTCGTCAGCTTATATC ATCTACCTCATGCTCAACGACTATAAGCCAACGCATGACCCCAACACTGATACCTTTAAAGTGCAGTATCTCCTC GGGTTCAGTGCTTTGTTGGCTCTCCTTTTCCCGCACGACTATAGCGTCTCAGAGATTCTTTGGACGTTCTCTATA TGGCTCGAGTCCGTGGCTATTTTGCCCCAGCTTTTCATGCTTCAGCGCACTGGGGAGGCGGACACCATAACAACG CATTATCTTTTCGCTTTGGGATTGTATCGTGCCCTTTACATCCCCAATTGGATTTATCGCTATTTCGCAGAGAGC CACTTTCAGCCTATCCCTGTTGTAGCCGGTATCATCCAGACACTCTTATATTCTGATTTCTTTTATATCTATTAC ACCAAGGTTATGAAGGGTAAGAAGTTCTCATTGCCTGTTTAA |
| Gene | >Ani_SJS72_1|g9275.t1 ATGAATATCTTCAGGTTATTAGGTGAGTTGTTTGTTCGCTCTCAGTTCAATTGACGCACCATGCTAATTCTTACA AACAAGCCGACTTTTCCCATCTTGCGTCTATATTCATATTATTGCAGAAGATGAAGTCTTCAAGTGTATGCTGTC ATTAAAACGGATTCTTAGCATTTTTCTGACTGGATCCAGAGTTGCTCAGGGCTTTCATTCAAGTCCCAGGCGCTA TATTTGATGGTTTTTGTAACGCGTTATCTTGGTAAGCTTCAGGGATTCAATACTCGATTGTATAGGTCTAGCTCT CTGACTGGTTTCTGATCACAGATTTATTCTGGGCTTTCACGGACTCTTTCTATAATACGACTTTTAAAATCCTGT TCATCGGCTCGTCAGCTTATATCATCTACCTCATGCTCAACGACTATAAGCCAACGCATGACCCCAACACTGATA CCTTTAAAGTGCAGTATCTCCTCGGGTTCAGTGCTTTGTTGGCTCTCCTTTTCCCGCACGACTATAGCGTCTCAG AGGTAAACCCCCTGGCAGGACATTTGTCACACCTCATCTGACCTTTCTAGATTCTTTGGACGTTCTCTATATGGC TCGAGTCCGTGGCTATTTTGCCCCAGCTTTTCATGCTTCAGCGCACTGGGGAGGCGGACACCATAACAACGCATT ATCTTTTCGCTTTGGGATTGTATCGTGCCCTTTACATCCCCAATTGGATTTATCGCTATTTCGCAGAGAGCCACT TTCAGCCTATCCCTGTTGTAGCCGGTATCATCCAGACACTCTTATATTCTGATTTCTTTTATATCTATTACACCA AGTGAGTCCCAGCAAGTTTCCTCTATCAGTACCCAGGGGCGCTAACTGTCATACAGGGTTATGAAGGGTAAGAAG TTCTCATTGCCTGTTTAA |