Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS72_1|g921.t1
Gene name
Locationscaffold_004:321142..322037
Strand-
Gene length (bp)895
Transcript length (bp)822
Coding sequence length (bp)822
Protein length (aa) 274

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14523 Syntaxin_2 Syntaxin-like protein 9.2E-26 37 134
PF05739 SNARE SNARE domain 6.2E-13 216 267

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 36 0.45

Transmembrane Domains

Domain # Start End Length
1 253 272 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS72_1|g921.t1
MSFDRLNSLEAQPTTFRRSDDPQYRDDPEFHRLTEGLSNQLFTLTSNITRLSDQIALLGTRRDTERVRERVHKLL
EDTRGGFRDVAEGIKKVQTWEDVSPSQKWTQQKLSSEFKSTLEEFQTVQRRALEKQRASAAAARTAVDEAEPGSG
GDHQPQQQQDQLLEEQPRLANQDEVDFQEALIIEREAEIRNIEQSVGELNELFRDVAHIVHEQGGQLDIISENVE
RVGDDTRGANVELRSASRYQKNARNKACCLLVIFAVILTIIVLAATLG*
Coding >Ani_SJS72_1|g921.t1
ATGTCGTTTGATCGCTTGAACTCGCTAGAGGCACAGCCTACAACTTTCCGTCGCTCCGACGATCCCCAGTATCGC
GATGACCCCGAATTCCATCGTTTGACCGAGGGTCTCTCCAACCAACTGTTTACCCTGACCTCCAACATCACTCGG
TTATCCGATCAGATTGCCCTTCTGGGAACGAGGCGAGACACTGAGCGTGTGCGCGAGAGAGTCCACAAGCTCCTG
GAGGATACTCGGGGGGGTTTCAGGGATGTCGCAGAAGGGATTAAGAAGGTCCAGACATGGGAGGATGTCAGCCCT
TCCCAAAAATGGACTCAGCAGAAGCTATCGTCCGAATTTAAATCTACCCTAGAAGAGTTCCAGACTGTTCAGCGT
CGTGCCTTGGAGAAGCAACGGGCATCCGCAGCAGCAGCTCGGACTGCCGTAGACGAAGCGGAGCCTGGTTCCGGA
GGTGACCATCAGCCGCAGCAACAGCAAGACCAATTGTTGGAGGAACAGCCCCGCCTTGCGAATCAGGACGAAGTG
GACTTCCAGGAGGCCCTCATTATCGAGCGCGAGGCTGAGATCCGCAACATTGAGCAGAGCGTTGGCGAACTCAAT
GAACTGTTCCGGGACGTGGCTCACATTGTCCATGAGCAAGGTGGACAGCTTGATATTATCAGCGAGAACGTTGAA
CGAGTTGGCGATGACACTCGTGGAGCAAACGTCGAGCTCCGTAGCGCCAGCCGGTACCAGAAGAATGCGCGCAAC
AAGGCTTGCTGTCTGCTTGTCATTTTTGCTGTTATCCTTACCATCATCGTCCTGGCGGCAACCCTGGGATAG
Transcript >Ani_SJS72_1|g921.t1
ATGTCGTTTGATCGCTTGAACTCGCTAGAGGCACAGCCTACAACTTTCCGTCGCTCCGACGATCCCCAGTATCGC
GATGACCCCGAATTCCATCGTTTGACCGAGGGTCTCTCCAACCAACTGTTTACCCTGACCTCCAACATCACTCGG
TTATCCGATCAGATTGCCCTTCTGGGAACGAGGCGAGACACTGAGCGTGTGCGCGAGAGAGTCCACAAGCTCCTG
GAGGATACTCGGGGGGGTTTCAGGGATGTCGCAGAAGGGATTAAGAAGGTCCAGACATGGGAGGATGTCAGCCCT
TCCCAAAAATGGACTCAGCAGAAGCTATCGTCCGAATTTAAATCTACCCTAGAAGAGTTCCAGACTGTTCAGCGT
CGTGCCTTGGAGAAGCAACGGGCATCCGCAGCAGCAGCTCGGACTGCCGTAGACGAAGCGGAGCCTGGTTCCGGA
GGTGACCATCAGCCGCAGCAACAGCAAGACCAATTGTTGGAGGAACAGCCCCGCCTTGCGAATCAGGACGAAGTG
GACTTCCAGGAGGCCCTCATTATCGAGCGCGAGGCTGAGATCCGCAACATTGAGCAGAGCGTTGGCGAACTCAAT
GAACTGTTCCGGGACGTGGCTCACATTGTCCATGAGCAAGGTGGACAGCTTGATATTATCAGCGAGAACGTTGAA
CGAGTTGGCGATGACACTCGTGGAGCAAACGTCGAGCTCCGTAGCGCCAGCCGGTACCAGAAGAATGCGCGCAAC
AAGGCTTGCTGTCTGCTTGTCATTTTTGCTGTTATCCTTACCATCATCGTCCTGGCGGCAACCCTGGGATAG
Gene >Ani_SJS72_1|g921.t1
ATGTCGTTTGATCGCTTGAACTCGCTAGAGGCACAGCCTACAACTTTCCGTCGCTCCGACGATCCCCAGTATCGC
GATGACCCCGAATTCCATCGTTTGACCGAGGGTCTCTCCAACCAACTGTTTACCCTGACCTCCAACATCACTCGG
TTATCCGATCAGATTGCCCTTCTGGGAACGAGGCGAGACACTGAGCGTGTGCGCGAGAGAGTCCACAAGCTCCTG
GAGGATACTCGGGGGGGTTTCAGGGATGTCGCAGAAGGGATTAAGAAGGTCCAGACATGGGAGGATGTCAGCGTA
TGTTACGCCCATATATAACCCCCCCACTGCGCTGCGACCGAACAAGCAATATTAATGTATTTCTCACCAGCCTTC
CCAAAAATGGACTCAGCAGAAGCTATCGTCCGAATTTAAATCTACCCTAGAAGAGTTCCAGACTGTTCAGCGTCG
TGCCTTGGAGAAGCAACGGGCATCCGCAGCAGCAGCTCGGACTGCCGTAGACGAAGCGGAGCCTGGTTCCGGAGG
TGACCATCAGCCGCAGCAACAGCAAGACCAATTGTTGGAGGAACAGCCCCGCCTTGCGAATCAGGACGAAGTGGA
CTTCCAGGAGGCCCTCATTATCGAGCGCGAGGCTGAGATCCGCAACATTGAGCAGAGCGTTGGCGAACTCAATGA
ACTGTTCCGGGACGTGGCTCACATTGTCCATGAGCAAGGTGGACAGCTTGATATTATCAGCGAGAACGTTGAACG
AGTTGGCGATGACACTCGTGGAGCAAACGTCGAGCTCCGTAGCGCCAGCCGGTACCAGAAGAATGCGCGCAACAA
GGCTTGCTGTCTGCTTGTCATTTTTGCTGTTATCCTTACCATCATCGTCCTGGCGGCAACCCTGGGATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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