© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g9178.t1 |
| Gene name | |
| Location | scaffold_095:55493..56902 |
| Strand | - |
| Gene length (bp) | 1409 |
| Transcript length (bp) | 1230 |
| Coding sequence length (bp) | 1230 |
| Protein length (aa) | 410 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01494 | FAD_binding_3 | FAD binding domain | 1.1E-23 | 10 | 364 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 6.2E-08 | 13 | 59 |
| PF01266 | DAO | FAD dependent oxidoreductase | 2.1E-07 | 10 | 51 |
| PF07992 | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase | 4.2E-06 | 10 | 170 |
| PF00890 | FAD_binding_2 | FAD binding domain | 1.4E-05 | 10 | 42 |
| PF05834 | Lycopene_cycl | Lycopene cyclase protein | 2.8E-05 | 10 | 172 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0071949 | FAD binding | Yes |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0050660 | flavin adenine dinucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043167 | ion binding | No |
| GO:0043168 | anion binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g9178.t1 MPSRTDAPLDIAVIGAGLGGLSAAVALRRQGHRITVYERYDFAGEVGASLSAASNGSRFLEQWGVDVKAAKPVVL KKLIMHEWESGAIQSEYGLGDYKAKFGTEYNNFHRIDIHQQLLKSAFEEPGEGTPCTLKVNHKAVSLDAEAGRIV FDNGETASADLIIAADGIRSQSRLDMGITPEFTMSTSCCYRCIISAEKLRSLGLDDYIDNEAIEYWGGFGINKIV MSPCSNGDVVSCYCFYPAEYNNLRDDGWNISATPEQLVDTFPGLDERMKLLMMNAEDIKMWRLYRHQPYPYWAKG KVCLLGDAAHPMMPDQSQGSCMAFEDAGALGLIFHRTFREEYSVAEGLQLYERLRKPRATKIQEASFRAREDLSE RIGWSSSTDRPGKLTIEEVCGYNMRKHLEELKAQ* |
| Coding | >Ani_SJS72_1|g9178.t1 ATGCCCTCGCGCACCGACGCTCCCCTCGATATTGCCGTCATCGGCGCCGGTCTAGGCGGCCTGAGTGCAGCCGTG GCTTTACGTCGCCAAGGTCATCGAATCACCGTCTACGAGCGATATGATTTTGCTGGCGAAGTGGGTGCTTCCTTG AGCGCAGCTTCCAATGGATCCCGGTTTCTGGAGCAATGGGGTGTCGACGTTAAGGCTGCCAAACCGGTGGTTTTG AAGAAGCTCATTATGCATGAATGGGAGTCTGGGGCAATACAGAGCGAATATGGTCTTGGGGACTATAAGGCCAAA TTTGGGACGGAATACAACAACTTCCATCGCATTGACATCCACCAACAATTACTTAAGTCTGCTTTTGAAGAGCCG GGCGAAGGCACTCCCTGCACATTGAAAGTGAATCACAAGGCCGTGTCGCTAGATGCAGAGGCCGGTCGCATAGTG TTCGACAATGGTGAGACGGCGTCAGCAGACCTCATCATCGCCGCGGATGGCATTCGCTCTCAAAGCCGCCTTGAT ATGGGAATCACTCCCGAGTTCACCATGTCAACTTCATGCTGCTACCGCTGCATCATTAGCGCCGAGAAGCTCCGC AGCCTCGGGCTAGACGACTACATCGACAATGAGGCAATAGAATACTGGGGTGGATTTGGGATCAACAAAATTGTC ATGTCACCCTGCAGTAACGGGGATGTCGTGAGCTGCTACTGCTTCTATCCGGCGGAGTACAACAATTTGCGTGAC GATGGCTGGAATATCTCGGCGACTCCGGAGCAGCTGGTCGATACCTTTCCGGGACTGGATGAACGCATGAAATTG TTGATGATGAACGCTGAGGACATTAAGATGTGGCGCTTGTACCGTCACCAACCATACCCCTACTGGGCCAAAGGC AAAGTATGCCTGCTAGGTGATGCCGCCCATCCGATGATGCCCGATCAGTCGCAGGGTTCGTGTATGGCCTTCGAG GACGCCGGCGCGCTGGGATTGATCTTCCACCGCACGTTCCGGGAAGAGTACAGTGTCGCAGAGGGCCTACAGCTA TACGAGCGGCTACGGAAGCCACGAGCCACGAAGATACAAGAGGCCAGTTTTCGTGCACGCGAGGACCTCAGCGAG CGCATTGGATGGAGCTCGTCCACGGATCGGCCGGGGAAGTTGACCATCGAAGAGGTATGTGGGTACAATATGCGA AAACATCTGGAAGAATTGAAAGCCCAGTAG |
| Transcript | >Ani_SJS72_1|g9178.t1 ATGCCCTCGCGCACCGACGCTCCCCTCGATATTGCCGTCATCGGCGCCGGTCTAGGCGGCCTGAGTGCAGCCGTG GCTTTACGTCGCCAAGGTCATCGAATCACCGTCTACGAGCGATATGATTTTGCTGGCGAAGTGGGTGCTTCCTTG AGCGCAGCTTCCAATGGATCCCGGTTTCTGGAGCAATGGGGTGTCGACGTTAAGGCTGCCAAACCGGTGGTTTTG AAGAAGCTCATTATGCATGAATGGGAGTCTGGGGCAATACAGAGCGAATATGGTCTTGGGGACTATAAGGCCAAA TTTGGGACGGAATACAACAACTTCCATCGCATTGACATCCACCAACAATTACTTAAGTCTGCTTTTGAAGAGCCG GGCGAAGGCACTCCCTGCACATTGAAAGTGAATCACAAGGCCGTGTCGCTAGATGCAGAGGCCGGTCGCATAGTG TTCGACAATGGTGAGACGGCGTCAGCAGACCTCATCATCGCCGCGGATGGCATTCGCTCTCAAAGCCGCCTTGAT ATGGGAATCACTCCCGAGTTCACCATGTCAACTTCATGCTGCTACCGCTGCATCATTAGCGCCGAGAAGCTCCGC AGCCTCGGGCTAGACGACTACATCGACAATGAGGCAATAGAATACTGGGGTGGATTTGGGATCAACAAAATTGTC ATGTCACCCTGCAGTAACGGGGATGTCGTGAGCTGCTACTGCTTCTATCCGGCGGAGTACAACAATTTGCGTGAC GATGGCTGGAATATCTCGGCGACTCCGGAGCAGCTGGTCGATACCTTTCCGGGACTGGATGAACGCATGAAATTG TTGATGATGAACGCTGAGGACATTAAGATGTGGCGCTTGTACCGTCACCAACCATACCCCTACTGGGCCAAAGGC AAAGTATGCCTGCTAGGTGATGCCGCCCATCCGATGATGCCCGATCAGTCGCAGGGTTCGTGTATGGCCTTCGAG GACGCCGGCGCGCTGGGATTGATCTTCCACCGCACGTTCCGGGAAGAGTACAGTGTCGCAGAGGGCCTACAGCTA TACGAGCGGCTACGGAAGCCACGAGCCACGAAGATACAAGAGGCCAGTTTTCGTGCACGCGAGGACCTCAGCGAG CGCATTGGATGGAGCTCGTCCACGGATCGGCCGGGGAAGTTGACCATCGAAGAGGTATGTGGGTACAATATGCGA AAACATCTGGAAGAATTGAAAGCCCAGTAG |
| Gene | >Ani_SJS72_1|g9178.t1 ATGCCCTCGCGCACCGACGCTCCCCTCGATATTGCCGTCATCGGCGCCGGTCTAGGCGGCCTGAGTGCAGCCGTG GCTTTACGTCGCCAAGGTCATCGAATCACCGTCTACGAGCGATATGATTTTGCTGGCGAAGTGGGTGCTTCCTTG AGCGCAGCTTCCAATGGATCCCGGTTTCTGGAGCAATGGGGTGTCGACGTTAAGGCTGCCAAACCGGTGGTTTTG AAGAAGCTCATTATGCATGAATGGGAGTCTGGGGCAATACAGAGCGAATATGGTCTTGGGGACTATAAGGCCAAA TTTGGGACGGTCAGTCTGGGATTCAATTGTCACTTCAGAATCTGTCATTGACGTGGACGACTTTCCTCAGGAATA CAACAACTTCCATCGCATTGACATCCACCAACAATTACTTAAGTCTGCTTTTGAAGAGCCGGGCGAAGGCACTCC CTGCACATTGAAAGTGAATCACAAGGCCGTGTCGCTAGATGCAGAGGCCGGTCGCATAGTGTTCGACAATGGTGA GACGGCGTCAGCAGACCTCATCATCGCCGCGGATGGCATTCGCGTTAGTATTCCTATCGTCTTTATCGATTGCCA TGAGATATGAGAAGAGATGAACTAACAACATAATGCAGTCTCAAAGCCGCCTTGATATGGGAATCACTCCCGAGT TCACCATGTCAACTTCATGCTGCTACCGCTGCATCATTAGCGCCGAGAAGCTCCGCAGCCTCGGGCTAGACGACT ACATCGACAATGAGGCAATAGAATACTGGGGTGGATTTGGGATCAACAAAATTGTCATGTCACCCTGCAGTAACG GGGATGTCGTGAGCTGCTACTGCTTCTATCCGGCGGAGTACAACAATTTGCGTGACGATGGCTGGAATATCTCGG CGACTCCGGAGCAGCTGGTCGATACCTTTCCGGGACTGGATGAACGCATGAAATTGTTGATGATGAACGCTGAGG ACATTAAGATGTGGCGCTGTAGGGACCCCTCTCCTGTGTTTGAGTCTCTCTGCTAATAACCGACAGTGTACCGTC ACCAACCATACCCCTACTGGGCCAAAGGCAAAGTATGCCTGCTAGGTGATGCCGCCCATCCGATGATGCCCGATC AGTCGCAGGGTTCGTGTATGGCCTTCGAGGACGCCGGCGCGCTGGGATTGATCTTCCACCGCACGTTCCGGGAAG AGTACAGTGTCGCAGAGGGCCTACAGCTATACGAGCGGCTACGGAAGCCACGAGCCACGAAGATACAAGAGGCCA GTTTTCGTGCACGCGAGGACCTCAGCGAGCGCATTGGATGGAGCTCGTCCACGGATCGGCCGGGGAAGTTGACCA TCGAAGAGGTATGTGGGTACAATATGCGAAAACATCTGGAAGAATTGAAAGCCCAGTAG |