© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g9048.t1 |
| Gene name | |
| Location | scaffold_092:23702..25036 |
| Strand | - |
| Gene length (bp) | 1334 |
| Transcript length (bp) | 1212 |
| Coding sequence length (bp) | 1212 |
| Protein length (aa) | 404 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 3.3E-13 | 77 | 230 |
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 6.5E-10 | 257 | 401 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 73 | 95 | 22 |
| 2 | 108 | 130 | 22 |
| 3 | 145 | 167 | 22 |
| 4 | 174 | 196 | 22 |
| 5 | 206 | 228 | 22 |
| 6 | 261 | 283 | 22 |
| 7 | 293 | 315 | 22 |
| 8 | 322 | 344 | 22 |
| 9 | 354 | 376 | 22 |
| 10 | 383 | 402 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g9048.t1 MSLPELNDSPLPKDSHQYDPVMQSEPEPDSPAVSSSPNRPRTLRQRISAAVAKSGSKPLLCFLPLGLVADVLHWN PVLVSIYNFLAVIPLSVVVSDCSDELSDSLGQLMGGLINATFGNCVELSTGILALTRGEIYFAQSVMIGSILSDL LLILGCCLVAASYNTYILHFNKPVTGALASLMVVTSVGLILPSVLYSTFPFDLGDQIVAFSRGTSAVLLALYGGY LYFQLGTHSHLFLQGETESNSSRESQRSMEWLTTTLILSALAIVVCTKNIMDSIPATAATLNISKTFIATILIPI ISNSCEGAVVITACGGGGDVNFAISMIVSSILQIGLFAIPFLVMLGWVMGTPMTLYFETFHTVVLFFSVLLVNCI LQDGKYTYIHGSMLVAMYAILTLAFYVR* |
| Coding | >Ani_SJS72_1|g9048.t1 ATGTCTCTGCCAGAGTTGAACGACTCCCCCTTGCCGAAAGACTCCCACCAGTACGATCCGGTCATGCAATCGGAG CCGGAGCCGGACTCGCCCGCCGTTTCCTCCTCCCCCAACCGCCCTCGTACCCTCCGGCAAAGGATATCTGCCGCC GTCGCCAAGTCTGGCTCCAAACCGCTGCTATGCTTTCTACCTCTAGGCCTTGTGGCGGACGTGCTGCATTGGAAC CCCGTGTTGGTGTCCATCTACAATTTCCTCGCCGTCATTCCCCTCTCCGTTGTGGTTTCAGACTGCTCCGATGAG TTGTCCGACTCCCTCGGGCAGCTCATGGGCGGCTTGATCAATGCTACCTTTGGCAACTGTGTCGAGCTGTCGACC GGCATCTTGGCCCTCACGCGTGGCGAAATATATTTTGCGCAATCTGTCATGATTGGGAGCATTCTGTCCGATCTA CTGCTTATCCTCGGTTGCTGTCTCGTCGCCGCCTCGTACAATACCTACATCCTCCATTTCAATAAACCCGTCACC GGCGCGCTCGCTTCGTTGATGGTGGTCACCTCAGTCGGACTGATTCTGCCCTCCGTCCTTTATTCCACCTTTCCT TTCGACCTTGGGGACCAGATCGTAGCGTTTTCCCGCGGCACCTCTGCCGTTCTACTTGCGCTATATGGTGGATAT CTTTATTTTCAGCTGGGGACCCATAGCCACCTCTTTCTCCAAGGGGAGACTGAGAGCAACTCATCGCGGGAGTCA CAGCGCAGCATGGAATGGCTCACAACCACTCTGATCCTATCCGCGTTAGCCATAGTTGTCTGCACGAAGAACATC ATGGACAGCATCCCCGCAACTGCTGCAACCCTAAACATTTCGAAGACGTTCATTGCGACCATTCTCATCCCCATA ATCAGCAACAGTTGTGAAGGGGCAGTGGTCATCACTGCCTGTGGTGGTGGCGGCGATGTGAACTTCGCCATCAGT ATGATCGTCAGCAGTATCCTGCAGATCGGATTGTTTGCCATCCCTTTCCTGGTCATGCTGGGTTGGGTTATGGGT ACGCCGATGACCCTGTATTTCGAAACCTTCCACACCGTGGTTCTATTCTTCTCCGTGCTGCTGGTCAATTGCATC CTGCAGGATGGGAAATATACCTATATTCACGGAAGTATGCTGGTTGCCATGTATGCGATTTTGACGCTTGCTTTT TACGTTCGGTAG |
| Transcript | >Ani_SJS72_1|g9048.t1 ATGTCTCTGCCAGAGTTGAACGACTCCCCCTTGCCGAAAGACTCCCACCAGTACGATCCGGTCATGCAATCGGAG CCGGAGCCGGACTCGCCCGCCGTTTCCTCCTCCCCCAACCGCCCTCGTACCCTCCGGCAAAGGATATCTGCCGCC GTCGCCAAGTCTGGCTCCAAACCGCTGCTATGCTTTCTACCTCTAGGCCTTGTGGCGGACGTGCTGCATTGGAAC CCCGTGTTGGTGTCCATCTACAATTTCCTCGCCGTCATTCCCCTCTCCGTTGTGGTTTCAGACTGCTCCGATGAG TTGTCCGACTCCCTCGGGCAGCTCATGGGCGGCTTGATCAATGCTACCTTTGGCAACTGTGTCGAGCTGTCGACC GGCATCTTGGCCCTCACGCGTGGCGAAATATATTTTGCGCAATCTGTCATGATTGGGAGCATTCTGTCCGATCTA CTGCTTATCCTCGGTTGCTGTCTCGTCGCCGCCTCGTACAATACCTACATCCTCCATTTCAATAAACCCGTCACC GGCGCGCTCGCTTCGTTGATGGTGGTCACCTCAGTCGGACTGATTCTGCCCTCCGTCCTTTATTCCACCTTTCCT TTCGACCTTGGGGACCAGATCGTAGCGTTTTCCCGCGGCACCTCTGCCGTTCTACTTGCGCTATATGGTGGATAT CTTTATTTTCAGCTGGGGACCCATAGCCACCTCTTTCTCCAAGGGGAGACTGAGAGCAACTCATCGCGGGAGTCA CAGCGCAGCATGGAATGGCTCACAACCACTCTGATCCTATCCGCGTTAGCCATAGTTGTCTGCACGAAGAACATC ATGGACAGCATCCCCGCAACTGCTGCAACCCTAAACATTTCGAAGACGTTCATTGCGACCATTCTCATCCCCATA ATCAGCAACAGTTGTGAAGGGGCAGTGGTCATCACTGCCTGTGGTGGTGGCGGCGATGTGAACTTCGCCATCAGT ATGATCGTCAGCAGTATCCTGCAGATCGGATTGTTTGCCATCCCTTTCCTGGTCATGCTGGGTTGGGTTATGGGT ACGCCGATGACCCTGTATTTCGAAACCTTCCACACCGTGGTTCTATTCTTCTCCGTGCTGCTGGTCAATTGCATC CTGCAGGATGGGAAATATACCTATATTCACGGAAGTATGCTGGTTGCCATGTATGCGATTTTGACGCTTGCTTTT TACGTTCGGTAG |
| Gene | >Ani_SJS72_1|g9048.t1 ATGTCTCTGCCAGAGTTGAACGACTCCCCCTTGCCGAAAGACTCCCACCAGTACGATCCGGTCATGCAATCGGAG CCGGAGCCGGACTCGCCCGCCGTTTCCTCCTCCCCCAACCGCCCTCGTACCCTCCGGCAAAGGATATCTGCCGCC GTCGCCAAGTCTGGCTCCAAACCGCTGCTATGCTTTCTACCTCTAGGCCTTGTGGCGGACGTGCTGCATTGGAAC CCCGTGTTGGTGTCCATCTACAATTTCCTCGCCGTCATTCCCCTCTCCGTTGTGGTTTCAGACTGCTCCGATGAG TTGTCCGACTCCCTCGGGCAGCTCATGGGCGGCTTGATCAATGCTACCTTTGGCAACTGTGTCGAGCTGTCGGTG AGTCCCATATCCTCTGCTGAACATCAAGCGTCGGTTTTAATCTCATGGCTGTAACTCTCCCAGACCGGCATCTTG GCCCTCACGCGTGGCGAAATATATTTTGCGCAATCTGTCATGATTGGGAGCATTCTGTCCGATCTACTGCTTATC CTCGGTTGCTGTCTCGTCGCCGCCTCGTACAATACCTACATCCTCCATTTCAATAAACCCGTCACCGGCGCGCTC GCTTCGTTGATGGTGGTCACCTCAGTCGGACTGATTCTGCCCTCCGTCCTTTATTCCACCTTTCCTTTCGACCTT GGGGACCAGATCGTAGCGTTTTCCCGCGGCACCTCTGCCGTTCTACTTGCGCTATATGGTGGATATCTTTATTTT CAGCTGGGGACCCATAGCCACCTCTTTCTCCAAGGGGAGACTGAGAGCAACTCATCGCGGGAGTCACAGCGCAGC ATGGAATGGCTCACAACCACTCTGATCCTATCCGCGTTAGCCATAGTTGTCTGCACGAAGAACATCATGGACAGC ATCCCCGCAACTGCTGCAACCCTAAACATTTCGAAGACGTTCATTGCGACCATTCTCATCCCCATAATCAGCAAC AGTTGTGAAGGGGCAGTGGTCATCACTGCCTGTGGTGGTGGCGGCGATGTGAACTTCGCCATCAGTATGATCGTC AGCAGTATCCTGCAGATCGGATTGTTTGCCATCCCTTTCCTGGTCATGCTGGGTTGGGTTATGGGTACGCCGATG ACCCTGTATTTCGAAACCTTCCACACCGTGGTTCTATTCTTCTCCGTGCTGCTGGTCAATTGCATCCTGCAGGAT GGGAAATATACCTATATTCACGGAAGTATGCTGGTTGCCATGTAAGTCATCTCCCTGGGACTCTTAATTGGTTTA CATCTACTGACTGTGAGGACAGGTATGCGATTTTGACGCTTGCTTTTTACGTTCGGTAG |