© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g8856.t1 |
| Gene name | |
| Location | scaffold_087:58398..59632 |
| Strand | + |
| Gene length (bp) | 1234 |
| Transcript length (bp) | 1161 |
| Coding sequence length (bp) | 1161 |
| Protein length (aa) | 387 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03798 | TRAM_LAG1_CLN8 | TLC domain | 1.7E-56 | 72 | 304 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 35 | 57 | 22 |
| 2 | 77 | 96 | 19 |
| 3 | 111 | 129 | 18 |
| 4 | 136 | 158 | 22 |
| 5 | 163 | 185 | 22 |
| 6 | 197 | 219 | 22 |
| 7 | 277 | 299 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g8856.t1 MLDPFPPPPAWLRDFVEPWALHYNVPALTEHAHEVIIAFAGYLFIHFILSPVLSPVLFPNHYPKLKPRTKLNWDV HVVSLVQSTFINGMALWVMFADEDRASMNASERIYGYTGACGLVSAFAAGYFVYDLIVSTIYVKLFGIGMLFHGI SALWVFSFGFRPFVNFYSPVFILYELSSPFLNIHWFLDKVNMTGSNLQWYNGMMLLFTFFSCRLLWGTYQSVAVY RDMWYALKQTWDATAAATPLEPVDLTSQVFQVRGGSGSEMAKYASFTAGGVPTWLVLTYVISNVVLNFLNYFWFS KMVETVLKRFRGPAEKSGPAGKPSKEEQISHLKEEITQKVVLEAASKLEQEEGSPFLDGVSEEKVASAVDSGLTE ELRKRKVQLSS* |
| Coding | >Ani_SJS72_1|g8856.t1 ATGTTGGATCCTTTTCCACCCCCGCCAGCATGGCTGCGGGATTTCGTTGAGCCATGGGCGCTTCATTACAACGTT CCTGCTCTGACGGAGCATGCTCACGAGGTCATTATTGCTTTTGCCGGCTACCTTTTTATCCACTTCATCTTATCC CCCGTTCTGTCTCCGGTGCTTTTCCCCAATCACTACCCGAAACTCAAACCCCGGACCAAGCTCAACTGGGACGTT CATGTCGTCTCGCTGGTGCAGAGCACCTTCATCAATGGCATGGCCCTTTGGGTCATGTTTGCCGATGAAGACCGG GCTTCTATGAACGCCTCTGAACGTATCTATGGGTATACTGGAGCCTGTGGACTGGTGTCCGCCTTCGCTGCCGGA TACTTTGTCTACGATCTGATCGTCAGCACGATCTACGTTAAGCTCTTTGGGATCGGAATGCTTTTCCATGGCATT AGCGCCCTGTGGGTGTTCAGTTTTGGATTTAGACCATTTGTGAACTTCTACTCCCCCGTCTTCATCCTCTATGAG CTCTCCAGCCCCTTCCTCAATATCCACTGGTTCCTCGACAAGGTCAACATGACCGGCAGCAACCTGCAGTGGTAC AATGGCATGATGCTTCTCTTCACCTTCTTCAGCTGCCGTCTCCTTTGGGGCACATACCAGTCCGTCGCCGTCTAT CGGGACATGTGGTACGCCTTGAAACAGACCTGGGATGCCACTGCAGCTGCCACTCCCCTCGAACCCGTCGATCTC ACCTCTCAAGTCTTCCAGGTCCGCGGAGGCAGCGGCAGTGAAATGGCTAAGTACGCCTCCTTCACCGCCGGCGGC GTCCCCACCTGGCTGGTCCTGACTTACGTGATCTCGAACGTGGTTCTCAACTTCCTGAACTACTTCTGGTTCTCG AAGATGGTCGAGACCGTCCTGAAGCGGTTCCGCGGGCCCGCCGAGAAGTCCGGACCGGCCGGTAAGCCCTCTAAG GAGGAGCAAATCAGCCATCTGAAGGAGGAGATCACGCAGAAGGTCGTCCTGGAAGCGGCCTCCAAGCTGGAACAG GAGGAAGGTAGCCCTTTCCTCGATGGAGTGTCTGAGGAGAAAGTCGCTTCGGCTGTCGACTCGGGGCTTACCGAG GAATTGAGGAAGAGGAAAGTCCAGTTGTCATCCTAG |
| Transcript | >Ani_SJS72_1|g8856.t1 ATGTTGGATCCTTTTCCACCCCCGCCAGCATGGCTGCGGGATTTCGTTGAGCCATGGGCGCTTCATTACAACGTT CCTGCTCTGACGGAGCATGCTCACGAGGTCATTATTGCTTTTGCCGGCTACCTTTTTATCCACTTCATCTTATCC CCCGTTCTGTCTCCGGTGCTTTTCCCCAATCACTACCCGAAACTCAAACCCCGGACCAAGCTCAACTGGGACGTT CATGTCGTCTCGCTGGTGCAGAGCACCTTCATCAATGGCATGGCCCTTTGGGTCATGTTTGCCGATGAAGACCGG GCTTCTATGAACGCCTCTGAACGTATCTATGGGTATACTGGAGCCTGTGGACTGGTGTCCGCCTTCGCTGCCGGA TACTTTGTCTACGATCTGATCGTCAGCACGATCTACGTTAAGCTCTTTGGGATCGGAATGCTTTTCCATGGCATT AGCGCCCTGTGGGTGTTCAGTTTTGGATTTAGACCATTTGTGAACTTCTACTCCCCCGTCTTCATCCTCTATGAG CTCTCCAGCCCCTTCCTCAATATCCACTGGTTCCTCGACAAGGTCAACATGACCGGCAGCAACCTGCAGTGGTAC AATGGCATGATGCTTCTCTTCACCTTCTTCAGCTGCCGTCTCCTTTGGGGCACATACCAGTCCGTCGCCGTCTAT CGGGACATGTGGTACGCCTTGAAACAGACCTGGGATGCCACTGCAGCTGCCACTCCCCTCGAACCCGTCGATCTC ACCTCTCAAGTCTTCCAGGTCCGCGGAGGCAGCGGCAGTGAAATGGCTAAGTACGCCTCCTTCACCGCCGGCGGC GTCCCCACCTGGCTGGTCCTGACTTACGTGATCTCGAACGTGGTTCTCAACTTCCTGAACTACTTCTGGTTCTCG AAGATGGTCGAGACCGTCCTGAAGCGGTTCCGCGGGCCCGCCGAGAAGTCCGGACCGGCCGGTAAGCCCTCTAAG GAGGAGCAAATCAGCCATCTGAAGGAGGAGATCACGCAGAAGGTCGTCCTGGAAGCGGCCTCCAAGCTGGAACAG GAGGAAGGTAGCCCTTTCCTCGATGGAGTGTCTGAGGAGAAAGTCGCTTCGGCTGTCGACTCGGGGCTTACCGAG GAATTGAGGAAGAGGAAAGTCCAGTTGTCATCCTAG |
| Gene | >Ani_SJS72_1|g8856.t1 ATGTTGGATCCTTTTCCACCCCCGCCAGCATGGCTGCGGGATTTCGTTGAGCCATGGGCGCTTCATTACAACGTT CCTGCTCTGACGGAGCATGCTCACGAGGTCATTATTGCTTTTGCCGGCTACCTTTTTATCCACTTCATCTTATCC CCCGTTCTGTCTCCGGTGCTTTTCCCCAATCACTACCCGAAACTCAAACCCCGGACCAAGCTCAACTGGGACGTT CATGTCGTCTCGCTGGTGCAGAGCACCTTCATCAATGGCATGGCCCTTTGGGTCATGTTTGCCGATGAAGACCGG GCTTCTATGAACGCCTCTGAACGTATCTATGGGTATACTGGAGCCTGTGGACTGGTGTCCGCCTTCGCTGCCGGA TACTTTGTCTACGATCTGATCGTCAGCACGATCTACGTTAAGCTCTTTGGGATCGGAATGCTTTTCCATGGCATT AGCGCCCTGTGGGTGTTCAGTTTTGGATTTGTGAGTTGTGACCTATTTCAGCTTTACAGTTTGCGTCAATAAGCT AATCATTTGGCTTGTGCTATCATCACAGAGACCATTTGTGAACTTCTACTCCCCCGTCTTCATCCTCTATGAGCT CTCCAGCCCCTTCCTCAATATCCACTGGTTCCTCGACAAGGTCAACATGACCGGCAGCAACCTGCAGTGGTACAA TGGCATGATGCTTCTCTTCACCTTCTTCAGCTGCCGTCTCCTTTGGGGCACATACCAGTCCGTCGCCGTCTATCG GGACATGTGGTACGCCTTGAAACAGACCTGGGATGCCACTGCAGCTGCCACTCCCCTCGAACCCGTCGATCTCAC CTCTCAAGTCTTCCAGGTCCGCGGAGGCAGCGGCAGTGAAATGGCTAAGTACGCCTCCTTCACCGCCGGCGGCGT CCCCACCTGGCTGGTCCTGACTTACGTGATCTCGAACGTGGTTCTCAACTTCCTGAACTACTTCTGGTTCTCGAA GATGGTCGAGACCGTCCTGAAGCGGTTCCGCGGGCCCGCCGAGAAGTCCGGACCGGCCGGTAAGCCCTCTAAGGA GGAGCAAATCAGCCATCTGAAGGAGGAGATCACGCAGAAGGTCGTCCTGGAAGCGGCCTCCAAGCTGGAACAGGA GGAAGGTAGCCCTTTCCTCGATGGAGTGTCTGAGGAGAAAGTCGCTTCGGCTGTCGACTCGGGGCTTACCGAGGA ATTGAGGAAGAGGAAAGTCCAGTTGTCATCCTAG |