Protein ID | Ani_SJS72_1|g8780.t1 |
Gene name | |
Location | scaffold_085:93221..94108 |
Strand | - |
Gene length (bp) | 887 |
Transcript length (bp) | 834 |
Coding sequence length (bp) | 834 |
Protein length (aa) | 278 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04479 | RTA1 | RTA1 like protein | 3.1E-18 | 50 | 249 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016021 | integral component of membrane | Yes |
GO:0031224 | intrinsic component of membrane | No |
GO:0110165 | cellular anatomical entity | No |
GO:0005575 | cellular_component | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 19 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 15 | 34 | 19 |
2 | 41 | 59 | 18 |
3 | 72 | 94 | 22 |
4 | 107 | 129 | 22 |
5 | 144 | 166 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS72_1|g8780.t1 MASTQCELYMYTPSLALAIIGVILFSALTTIHLYRMIESKAWYGIFFVLGGLELIGHTARSFSTQDVCDRGAYGV QSVALLMGPTLIMFSVNLTQSEFVNVLDAEQFCLLPLAWQRGVYPAMNAILMVIQLVGGCMTISSSSETVATGTK LAIALFVVQTIFWGFTMAENICMSYRLGRHPTTASSCVLANWKTWNQLIPLAGSIIATGRNIMRLTMAGGIEFLV DYEWPSYAFDGYQMVVVLGAWGIWYLPGKSRELSTRVRYTNLTRLERVVDDV* |
Coding | >Ani_SJS72_1|g8780.t1 ATGGCTTCTACGCAGTGCGAGTTGTATATGTATACACCCAGCCTTGCATTGGCGATTATCGGAGTCATTCTATTC TCTGCCTTGACCACGATCCACCTGTACCGTATGATTGAATCAAAAGCGTGGTATGGCATATTCTTCGTTCTTGGT GGTCTGGAGTTAATCGGACATACGGCTCGATCCTTCTCGACCCAAGATGTCTGCGATAGAGGCGCGTACGGTGTG CAATCAGTCGCACTATTGATGGGACCGACATTGATCATGTTTTCCGTCAACCTGACTCAGAGTGAGTTCGTCAAC GTGCTTGATGCCGAACAATTCTGTTTGCTCCCACTGGCGTGGCAGCGGGGCGTTTATCCCGCTATGAACGCAATC TTGATGGTCATTCAGCTTGTTGGAGGTTGTATGACCATCTCATCATCGAGTGAGACCGTGGCAACGGGAACAAAG CTCGCTATCGCTCTCTTCGTGGTCCAGACAATTTTTTGGGGATTCACTATGGCAGAAAATATCTGCATGAGCTAT CGCCTGGGTCGCCATCCCACAACTGCTAGCAGCTGCGTGTTAGCCAACTGGAAGACATGGAACCAATTGATCCCG TTAGCAGGGTCTATCATTGCGACTGGACGCAACATAATGCGGCTGACAATGGCAGGTGGCATTGAGTTTCTCGTG GACTATGAATGGCCTTCGTATGCATTTGATGGGTATCAGATGGTGGTGGTTCTGGGCGCTTGGGGGATTTGGTAC TTACCGGGGAAGTCTCGCGAACTCTCGACTCGAGTGCGTTATACGAACCTCACTCGGCTGGAGAGGGTCGTTGAT GATGTTTAA |
Transcript | >Ani_SJS72_1|g8780.t1 ATGGCTTCTACGCAGTGCGAGTTGTATATGTATACACCCAGCCTTGCATTGGCGATTATCGGAGTCATTCTATTC TCTGCCTTGACCACGATCCACCTGTACCGTATGATTGAATCAAAAGCGTGGTATGGCATATTCTTCGTTCTTGGT GGTCTGGAGTTAATCGGACATACGGCTCGATCCTTCTCGACCCAAGATGTCTGCGATAGAGGCGCGTACGGTGTG CAATCAGTCGCACTATTGATGGGACCGACATTGATCATGTTTTCCGTCAACCTGACTCAGAGTGAGTTCGTCAAC GTGCTTGATGCCGAACAATTCTGTTTGCTCCCACTGGCGTGGCAGCGGGGCGTTTATCCCGCTATGAACGCAATC TTGATGGTCATTCAGCTTGTTGGAGGTTGTATGACCATCTCATCATCGAGTGAGACCGTGGCAACGGGAACAAAG CTCGCTATCGCTCTCTTCGTGGTCCAGACAATTTTTTGGGGATTCACTATGGCAGAAAATATCTGCATGAGCTAT CGCCTGGGTCGCCATCCCACAACTGCTAGCAGCTGCGTGTTAGCCAACTGGAAGACATGGAACCAATTGATCCCG TTAGCAGGGTCTATCATTGCGACTGGACGCAACATAATGCGGCTGACAATGGCAGGTGGCATTGAGTTTCTCGTG GACTATGAATGGCCTTCGTATGCATTTGATGGGTATCAGATGGTGGTGGTTCTGGGCGCTTGGGGGATTTGGTAC TTACCGGGGAAGTCTCGCGAACTCTCGACTCGAGTGCGTTATACGAACCTCACTCGGCTGGAGAGGGTCGTTGAT GATGTTTAA |
Gene | >Ani_SJS72_1|g8780.t1 ATGGCTTCTACGCAGTGCGAGTTGTATATGTATACACCCAGCCTTGCATTGGCGATTATCGGAGTCATTCTATTC TCTGCCTTGACCACGATCCACCTGTACCGTATGATTGAATCAAAAGCGTGGTATGGCATATTCTTCGTTCTTGGT GGTCTGGGTAAGTTGTCCCTGTCATTGATGCCCTATCAATCTGTTAACAATATGTAGCAGAGTTAATCGGACATA CGGCTCGATCCTTCTCGACCCAAGATGTCTGCGATAGAGGCGCGTACGGTGTGCAATCAGTCGCACTATTGATGG GACCGACATTGATCATGTTTTCCGTCAACCTGACTCAGAGTGAGTTCGTCAACGTGCTTGATGCCGAACAATTCT GTTTGCTCCCACTGGCGTGGCAGCGGGGCGTTTATCCCGCTATGAACGCAATCTTGATGGTCATTCAGCTTGTTG GAGGTTGTATGACCATCTCATCATCGAGTGAGACCGTGGCAACGGGAACAAAGCTCGCTATCGCTCTCTTCGTGG TCCAGACAATTTTTTGGGGATTCACTATGGCAGAAAATATCTGCATGAGCTATCGCCTGGGTCGCCATCCCACAA CTGCTAGCAGCTGCGTGTTAGCCAACTGGAAGACATGGAACCAATTGATCCCGTTAGCAGGGTCTATCATTGCGA CTGGACGCAACATAATGCGGCTGACAATGGCAGGTGGCATTGAGTTTCTCGTGGACTATGAATGGCCTTCGTATG CATTTGATGGGTATCAGATGGTGGTGGTTCTGGGCGCTTGGGGGATTTGGTACTTACCGGGGAAGTCTCGCGAAC TCTCGACTCGAGTGCGTTATACGAACCTCACTCGGCTGGAGAGGGTCGTTGATGATGTTTAA |