© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS72_1|g870.t1 |
| Gene name | |
| Location | scaffold_004:177506..178489 |
| Strand | - |
| Gene length (bp) | 983 |
| Transcript length (bp) | 639 |
| Coding sequence length (bp) | 639 |
| Protein length (aa) | 213 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00160 | Pro_isomerase | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 5.1E-49 | 39 | 193 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | Yes |
| GO:0000413 | protein peptidyl-prolyl isomerization | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0018208 | peptidyl-proline modification | No |
| GO:0008150 | biological_process | No |
| GO:0008152 | metabolic process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0016853 | isomerase activity | No |
| GO:0018193 | peptidyl-amino acid modification | No |
| GO:0019538 | protein metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0016859 | cis-trans isomerase activity | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0036211 | protein modification process | No |
| GO:0003824 | catalytic activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 23 | 18 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g870.t1 MNFKNIFLSFFFVLAVGLALVHAEDAQPRGPKITSKVFFDIEHGDKPLGRVVLGLYGKTVPKTAENFRALATGEK GFGYEGSTFHRVIKDFMIQGGDFTRGDGTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPT PWLDGRHVVFGEVLEGYEIVAQIENVPKGRSDRPVETVKIVKSGELESEDKAGEKGSSHEEL* |
| Coding | >Ani_SJS72_1|g870.t1 ATGAACTTCAAGAACATTTTTCTATCTTTCTTCTTCGTCCTGGCGGTTGGACTTGCTCTTGTCCACGCCGAAGAT GCTCAGCCCCGGGGCCCCAAGATCACCAGTAAGGTGTTCTTTGATATAGAGCACGGAGACAAGCCTCTGGGCAGA GTCGTGCTTGGCTTGTATGGCAAGACTGTTCCTAAGACCGCTGAGAACTTCCGCGCTCTCGCTACTGGTGAGAAG GGCTTTGGCTATGAAGGATCTACCTTCCACCGTGTCATTAAGGACTTCATGATCCAGGGTGGTGACTTCACTCGT GGCGATGGTACCGGTGGAAAGTCGATCTACGGTGAGAAGTTCGCCGACGAAAACTTCAAGCTGAGGCATACGCGC AAGGGGCTCCTGAGCATGGCCAACGCCGGCAAGGACACCAACGGCTCCCAGTTCTTCATCACCACCGTTCCTACA CCTTGGCTTGATGGCCGCCATGTCGTCTTCGGTGAAGTGCTCGAGGGCTACGAGATCGTCGCTCAGATTGAGAAC GTGCCCAAGGGCCGTTCTGACAGACCCGTGGAGACTGTCAAGATCGTCAAGAGTGGAGAGTTGGAGTCTGAGGAC AAGGCTGGAGAAAAAGGTAGCAGCCACGAGGAGCTGTAG |
| Transcript | >Ani_SJS72_1|g870.t1 ATGAACTTCAAGAACATTTTTCTATCTTTCTTCTTCGTCCTGGCGGTTGGACTTGCTCTTGTCCACGCCGAAGAT GCTCAGCCCCGGGGCCCCAAGATCACCAGTAAGGTGTTCTTTGATATAGAGCACGGAGACAAGCCTCTGGGCAGA GTCGTGCTTGGCTTGTATGGCAAGACTGTTCCTAAGACCGCTGAGAACTTCCGCGCTCTCGCTACTGGTGAGAAG GGCTTTGGCTATGAAGGATCTACCTTCCACCGTGTCATTAAGGACTTCATGATCCAGGGTGGTGACTTCACTCGT GGCGATGGTACCGGTGGAAAGTCGATCTACGGTGAGAAGTTCGCCGACGAAAACTTCAAGCTGAGGCATACGCGC AAGGGGCTCCTGAGCATGGCCAACGCCGGCAAGGACACCAACGGCTCCCAGTTCTTCATCACCACCGTTCCTACA CCTTGGCTTGATGGCCGCCATGTCGTCTTCGGTGAAGTGCTCGAGGGCTACGAGATCGTCGCTCAGATTGAGAAC GTGCCCAAGGGCCGTTCTGACAGACCCGTGGAGACTGTCAAGATCGTCAAGAGTGGAGAGTTGGAGTCTGAGGAC AAGGCTGGAGAAAAAGGTAGCAGCCACGAGGAGCTGTAG |
| Gene | >Ani_SJS72_1|g870.t1 ATGAACTTCAAGAACATTTTTCTATCTTTCTTCTTCGTCCTGGCGGTTGGACTTGCTCTTGTCCACGCCGAAGAT GCTCAGCCCCGGGGCCCCAAGATCACCAGTAAGGTGTGTATAGTTATGATTTTCGGCGCTTACAACCAGTGTCGA CTTCTTTCCAAATATGACATACTAATTGCATCTACATACAGGTGTTCTTTGATATAGAGCACGGAGACAAGCCTC TGGGCAGAGTCGTGCTTGGCTTGTATGGCAAGACTGTTCCTAAGGTACGTGATCGTCGCCATGCTATTATCTCTC GGAGCTCCTGTACTGATCATATTATTATTGCTTTTCTAGACCGCTGAGAACTTCCGGTATGATTTCAGGACTCGA TCTCAGATGAAGCTTCTGCACCCTGCTGACATTGCTCGTTTCCAGCGCTCTCGCTACTGGTGAGAAGGGCTTTGG CTATGAAGGATCTACCTTCCACCGTGTCATTAAGGACTTCATGATCCAGGGTGGTGACTTCACTCGTGGCGATGG TCAGTAATATGAGGATCTTGGTTATATGTGTACAATTTCCCCGCCAAATGCTGACTGTTCATGCGAAAAGGTACC GGTGGAAAGTCGATCTACGGTGAGAAGTTCGCCGACGAAAACTTCAAGCTGAGGCATACGCGCAAGGGGCTCCTG AGCATGGCCAACGCCGGCAAGGACACCAACGGCTCCCAGTTCTTCATCACCACCGTTCCTACACCGTAAGTCTAT GCCAATTTCGTCTAGCGATAACAGCCAGCTTATGATTGCGGGACAGTTGGCTTGATGGCCGCCATGTCGTCTTCG GTGAAGTGCTCGAGGGCTACGAGATCGTCGCTCAGATTGAGAACGTGCCCAAGGGCCGTTCTGACAGACCCGTGG AGACTGTCAAGATCGTCAAGAGTGGAGAGTTGGAGTCTGAGGACAAGGCTGGAGAAAAAGGTAGCAGCCACGAGG AGCTGTAG |