© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g8297.t1 |
| Gene name | |
| Location | scaffold_075:122032..123092 |
| Strand | + |
| Gene length (bp) | 1060 |
| Transcript length (bp) | 804 |
| Coding sequence length (bp) | 804 |
| Protein length (aa) | 268 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01956 | EMC3_TMCO1 | Integral membrane protein EMC3/TMCO1-like | 1.7E-56 | 10 | 203 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 14 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 34 | 19 |
| 2 | 135 | 157 | 22 |
| 3 | 177 | 199 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g8297.t1 MALQGVEQTILRDPALFYWIVFPITVVMILTGILRHYATVLMNNPPKPASTLAESRERLGLIRGVNLRNNASVLS KESFEMRKNYLVSAYQSGAFLKDPASRGQPPANPMTDPAGMEAMMGMMKGNMMMMIPQTLIMSWINAFFSGFVIL KLPFPLTIRFKSMLQSGVMTRDLDVRWVSSLSWYFLNLFGLQSVFGFILGSDNAANHMASQMASMNPAAGINPFQ PGQDPDKLYQSEAENLEVIEHFCILDGVEERVLAHYAGRKSY* |
| Coding | >Ani_SJS72_1|g8297.t1 ATGGCTCTGCAAGGCGTTGAGCAGACGATCCTTCGGGATCCGGCTCTATTCTACTGGATTGTGTTCCCTATCACT GTTGTTATGATTCTGACAGGTATCCTCCGTCACTATGCCACCGTCCTGATGAACAACCCCCCGAAGCCGGCTTCG ACGCTGGCCGAATCCCGCGAACGTCTCGGACTCATTCGCGGCGTCAACCTCCGGAACAACGCCTCCGTGCTCTCC AAGGAGTCCTTCGAGATGCGGAAGAACTACCTCGTTTCTGCCTACCAGAGCGGCGCTTTCCTCAAGGACCCTGCT AGTCGCGGCCAGCCGCCTGCAAACCCAATGACCGATCCTGCTGGCATGGAGGCCATGATGGGCATGATGAAGGGG AATATGATGATGATGATCCCGCAGACGCTGATTATGAGCTGGATTAATGCGTTCTTTTCGGGTTTCGTGATTTTG AAATTGCCCTTCCCGCTTACCATTCGGTTCAAGTCAATGCTGCAGTCTGGTGTTATGACCCGGGATTTGGATGTT AGATGGGTGTCCAGTCTTTCGTGGTATTTCTTGAACTTGTTTGGACTGCAGTCGGTCTTTGGGTTTATCTTGGGC AGTGATAATGCGGCCAACCACATGGCTTCGCAAATGGCTTCGATGAACCCTGCCGCTGGGATTAACCCGTTCCAG CCGGGCCAGGATCCCGATAAGTTGTACCAGAGCGAGGCCGAGAACCTGGAGGTCATTGAGCACTTTTGCATTCTG GACGGCGTTGAGGAGAGAGTGCTGGCTCATTACGCGGGTAGGAAAAGCTATTAG |
| Transcript | >Ani_SJS72_1|g8297.t1 ATGGCTCTGCAAGGCGTTGAGCAGACGATCCTTCGGGATCCGGCTCTATTCTACTGGATTGTGTTCCCTATCACT GTTGTTATGATTCTGACAGGTATCCTCCGTCACTATGCCACCGTCCTGATGAACAACCCCCCGAAGCCGGCTTCG ACGCTGGCCGAATCCCGCGAACGTCTCGGACTCATTCGCGGCGTCAACCTCCGGAACAACGCCTCCGTGCTCTCC AAGGAGTCCTTCGAGATGCGGAAGAACTACCTCGTTTCTGCCTACCAGAGCGGCGCTTTCCTCAAGGACCCTGCT AGTCGCGGCCAGCCGCCTGCAAACCCAATGACCGATCCTGCTGGCATGGAGGCCATGATGGGCATGATGAAGGGG AATATGATGATGATGATCCCGCAGACGCTGATTATGAGCTGGATTAATGCGTTCTTTTCGGGTTTCGTGATTTTG AAATTGCCCTTCCCGCTTACCATTCGGTTCAAGTCAATGCTGCAGTCTGGTGTTATGACCCGGGATTTGGATGTT AGATGGGTGTCCAGTCTTTCGTGGTATTTCTTGAACTTGTTTGGACTGCAGTCGGTCTTTGGGTTTATCTTGGGC AGTGATAATGCGGCCAACCACATGGCTTCGCAAATGGCTTCGATGAACCCTGCCGCTGGGATTAACCCGTTCCAG CCGGGCCAGGATCCCGATAAGTTGTACCAGAGCGAGGCCGAGAACCTGGAGGTCATTGAGCACTTTTGCATTCTG GACGGCGTTGAGGAGAGAGTGCTGGCTCATTACGCGGGTAGGAAAAGCTATTAG |
| Gene | >Ani_SJS72_1|g8297.t1 ATGGCTCTGCAAGGCGTTGAGCAGACGATCCTTCGGGATCCGGCTCTATTGTGAGTTTATTGCTCCAGACTGGGC GTGATTTGATGTGAAATGCTGATGTGATCGACTCGCACCTCTAGCTACTGGATTGTGTTCCCTATCACTGTTGTT ATGGTATGCGAGCCCTCCTCTACTCTATAAGAGACAGGGATATATGCTAATCGTATATTCCACAGATTCTGACAG GTATCCTCCGTCACTATGCCACCGTCCTGATGAACAACCCCCCGAAGCCGGCTTCGACGCTGGCCGAATCCCGCG AACGTCTCGGACTCATTCGCGGCGTCAACCTCCGGAACAACGCCTCCGTGCTCTCCAAGGAGTCCTTCGAGATGC GGAAGAACTACCTCGTTTCTGCCTACCAGAGCGGCGCTTTCCTCAAGGACCCTGCTAGTCGCGGCCAGCCGCCTG CAAACCCAATGACCGATCCTGCTGGCATGGAGGCCATGATGGGCATGATGAAGGGGAATATGATGATGATGATCC CGCAGACGCTGATTATGAGCTGGATTAATGCGTTCTTTTCGGGTTTCGTGATTTGTAGGTCTTATCTGATATGTT TTTGGAAAGGGAGTGAGCTGACAAGAGTGCTAGTGAAATTGCCCTTCCCGCTTACCATTCGGTTCAAGTCAATGC TGCAGTCTGGTGTTATGACCCGGGATTTGGATGTTAGATGGGTGTCCAGTCTTTCGTGGTATTTCTTGAACTTGT TTGGACTGCAGTCGGTCTTTGGGTTTATCTTGGGCAGTGATAATGGTTAGTTCGCTGTGTTTGCCTCATTATCGT TTCTATTATCTTTGTTCGAGTGTGCTGACAGATTGCTTTAGCGGCCAACCACATGGCTTCGCAAATGGCTTCGAT GAACCCTGCCGCTGGGATTAACCCGTTCCAGCCGGGCCAGGATCCCGATAAGTTGTACCAGAGCGAGGCCGAGAA CCTGGAGGTCATTGAGCACTTTTGCATTCTGGACGGCGTTGAGGAGAGAGTGCTGGCTCATTACGCGGGTAGGAA AAGCTATTAG |