© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g8161.t1 |
| Gene name | |
| Location | scaffold_073:24786..25923 |
| Strand | - |
| Gene length (bp) | 1137 |
| Transcript length (bp) | 1137 |
| Coding sequence length (bp) | 1137 |
| Protein length (aa) | 379 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04757 | Pex2_Pex12 | Pex2 / Pex12 amino terminal region | 8.3E-47 | 41 | 260 |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 4.3E-11 | 326 | 364 |
| PF13920 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | 1.7E-10 | 324 | 368 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 2.5E-10 | 327 | 364 |
| PF13639 | zf-RING_2 | Ring finger domain | 4.3E-10 | 326 | 365 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 3.8E-09 | 327 | 362 |
| PF14634 | zf-RING_5 | zinc-RING finger domain | 3.9E-07 | 326 | 366 |
| PF14447 | Prok-RING_4 | Prokaryotic RING finger family 4 | 1.1E-06 | 327 | 368 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| Orthofinder run ID | 3 |
| Orthogroup | 7905 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g8161.t1 MADDDLSLTTSAPTPSVSPSAHFYPFATSPDIIRSHEKDVFMTGSLTSQAHSIVRSLRGARYAHTHSDAIKHLTE ILYFALTTFIGNRTLGEEYCDLVQLEDDTLQLPSLPRRAGYILSSILLPWTLQRILPAFRQRLRSKLERSIARQQ LKASQAKKTTVEQAKDNKLAKKPSFFTKLRIQKYILEHLDSITSLSPIYAVSIATFYFTGAYYHLSKRFSGLRYV FTKKVEEGEQRVGYEVLGVLLVLQIAVQGILHIKKVGADLGQENEDSGLEADGGMKQYGASLIPSLENPSSLPLL PASAARYDFSEDSNAIPWIPEGQQRKCTLCLELFKDPSVTTCGHVFCWTCVRDWVREKPECPLCRQEVLLSKVLP LRG* |
| Coding | >Ani_SJS72_1|g8161.t1 ATGGCCGACGACGATCTCTCCTTGACCACCTCCGCTCCGACACCGTCCGTCTCTCCCTCGGCTCATTTCTACCCT TTCGCTACCTCCCCAGATATCATTCGGTCGCATGAAAAGGATGTCTTTATGACAGGGAGCTTGACAAGCCAAGCT CATTCGATAGTGCGCTCTCTCCGCGGAGCTCGCTATGCACACACGCACTCCGATGCCATCAAACACCTAACCGAG ATTCTCTACTTTGCCTTGACCACCTTCATTGGAAACCGAACCCTAGGAGAAGAATACTGCGACTTGGTCCAGTTA GAAGACGACACCCTCCAACTTCCTTCTCTCCCCAGACGAGCCGGTTACATTCTCAGCAGTATCCTGCTGCCCTGG ACACTGCAGCGAATCCTCCCCGCTTTCCGACAACGATTGCGATCGAAGCTGGAACGCAGTATCGCTCGACAACAA CTCAAAGCATCCCAAGCCAAGAAAACAACAGTGGAGCAAGCCAAAGACAACAAGCTGGCTAAGAAACCGTCTTTC TTCACGAAATTGCGGATCCAGAAGTACATCCTCGAGCATCTGGACTCCATCACGTCGCTGTCACCCATATATGCT GTTAGCATCGCAACGTTCTATTTCACGGGCGCTTATTACCATCTCTCGAAACGGTTCTCGGGTCTGCGATATGTC TTCACGAAAAAGGTCGAGGAGGGTGAACAACGGGTGGGTTATGAGGTCTTGGGTGTGCTGCTTGTCTTGCAAATC GCTGTACAGGGCATCCTGCATATCAAGAAGGTCGGGGCCGATTTGGGACAAGAAAATGAAGATAGTGGGCTTGAA GCAGATGGCGGTATGAAACAGTATGGAGCTTCCTTGATACCGTCTCTCGAGAACCCCTCCTCGCTTCCTCTCCTT CCCGCTTCTGCTGCCCGGTACGATTTCTCGGAAGATTCCAATGCGATCCCCTGGATCCCTGAAGGGCAGCAGCGC AAATGTACGCTTTGTCTGGAGTTATTCAAGGATCCGAGTGTCACGACCTGTGGACATGTCTTCTGTTGGACGTGT GTACGGGACTGGGTACGGGAGAAGCCAGAGTGCCCGCTTTGTCGGCAGGAGGTGCTCTTGTCGAAAGTGCTGCCC TTGAGAGGATGA |
| Transcript | >Ani_SJS72_1|g8161.t1 ATGGCCGACGACGATCTCTCCTTGACCACCTCCGCTCCGACACCGTCCGTCTCTCCCTCGGCTCATTTCTACCCT TTCGCTACCTCCCCAGATATCATTCGGTCGCATGAAAAGGATGTCTTTATGACAGGGAGCTTGACAAGCCAAGCT CATTCGATAGTGCGCTCTCTCCGCGGAGCTCGCTATGCACACACGCACTCCGATGCCATCAAACACCTAACCGAG ATTCTCTACTTTGCCTTGACCACCTTCATTGGAAACCGAACCCTAGGAGAAGAATACTGCGACTTGGTCCAGTTA GAAGACGACACCCTCCAACTTCCTTCTCTCCCCAGACGAGCCGGTTACATTCTCAGCAGTATCCTGCTGCCCTGG ACACTGCAGCGAATCCTCCCCGCTTTCCGACAACGATTGCGATCGAAGCTGGAACGCAGTATCGCTCGACAACAA CTCAAAGCATCCCAAGCCAAGAAAACAACAGTGGAGCAAGCCAAAGACAACAAGCTGGCTAAGAAACCGTCTTTC TTCACGAAATTGCGGATCCAGAAGTACATCCTCGAGCATCTGGACTCCATCACGTCGCTGTCACCCATATATGCT GTTAGCATCGCAACGTTCTATTTCACGGGCGCTTATTACCATCTCTCGAAACGGTTCTCGGGTCTGCGATATGTC TTCACGAAAAAGGTCGAGGAGGGTGAACAACGGGTGGGTTATGAGGTCTTGGGTGTGCTGCTTGTCTTGCAAATC GCTGTACAGGGCATCCTGCATATCAAGAAGGTCGGGGCCGATTTGGGACAAGAAAATGAAGATAGTGGGCTTGAA GCAGATGGCGGTATGAAACAGTATGGAGCTTCCTTGATACCGTCTCTCGAGAACCCCTCCTCGCTTCCTCTCCTT CCCGCTTCTGCTGCCCGGTACGATTTCTCGGAAGATTCCAATGCGATCCCCTGGATCCCTGAAGGGCAGCAGCGC AAATGTACGCTTTGTCTGGAGTTATTCAAGGATCCGAGTGTCACGACCTGTGGACATGTCTTCTGTTGGACGTGT GTACGGGACTGGGTACGGGAGAAGCCAGAGTGCCCGCTTTGTCGGCAGGAGGTGCTCTTGTCGAAAGTGCTGCCC TTGAGAGGATGA |
| Gene | >Ani_SJS72_1|g8161.t1 ATGGCCGACGACGATCTCTCCTTGACCACCTCCGCTCCGACACCGTCCGTCTCTCCCTCGGCTCATTTCTACCCT TTCGCTACCTCCCCAGATATCATTCGGTCGCATGAAAAGGATGTCTTTATGACAGGGAGCTTGACAAGCCAAGCT CATTCGATAGTGCGCTCTCTCCGCGGAGCTCGCTATGCACACACGCACTCCGATGCCATCAAACACCTAACCGAG ATTCTCTACTTTGCCTTGACCACCTTCATTGGAAACCGAACCCTAGGAGAAGAATACTGCGACTTGGTCCAGTTA GAAGACGACACCCTCCAACTTCCTTCTCTCCCCAGACGAGCCGGTTACATTCTCAGCAGTATCCTGCTGCCCTGG ACACTGCAGCGAATCCTCCCCGCTTTCCGACAACGATTGCGATCGAAGCTGGAACGCAGTATCGCTCGACAACAA CTCAAAGCATCCCAAGCCAAGAAAACAACAGTGGAGCAAGCCAAAGACAACAAGCTGGCTAAGAAACCGTCTTTC TTCACGAAATTGCGGATCCAGAAGTACATCCTCGAGCATCTGGACTCCATCACGTCGCTGTCACCCATATATGCT GTTAGCATCGCAACGTTCTATTTCACGGGCGCTTATTACCATCTCTCGAAACGGTTCTCGGGTCTGCGATATGTC TTCACGAAAAAGGTCGAGGAGGGTGAACAACGGGTGGGTTATGAGGTCTTGGGTGTGCTGCTTGTCTTGCAAATC GCTGTACAGGGCATCCTGCATATCAAGAAGGTCGGGGCCGATTTGGGACAAGAAAATGAAGATAGTGGGCTTGAA GCAGATGGCGGTATGAAACAGTATGGAGCTTCCTTGATACCGTCTCTCGAGAACCCCTCCTCGCTTCCTCTCCTT CCCGCTTCTGCTGCCCGGTACGATTTCTCGGAAGATTCCAATGCGATCCCCTGGATCCCTGAAGGGCAGCAGCGC AAATGTACGCTTTGTCTGGAGTTATTCAAGGATCCGAGTGTCACGACCTGTGGACATGTCTTCTGTTGGACGTGT GTACGGGACTGGGTACGGGAGAAGCCAGAGTGCCCGCTTTGTCGGCAGGAGGTGCTCTTGTCGAAAGTGCTGCCC TTGAGAGGATGA |