© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS72_1|g8149.t1 |
| Gene name | |
| Location | scaffold_072:150665..151254 |
| Strand | - |
| Gene length (bp) | 589 |
| Transcript length (bp) | 399 |
| Coding sequence length (bp) | 399 |
| Protein length (aa) | 133 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08507 | COPI_assoc | COPI associated protein | 4.2E-32 | 5 | 126 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 34 | 56 | 22 |
| 3 | 63 | 85 | 22 |
| 4 | 89 | 111 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g8149.t1 MDLSNIFRIVNIAVGVLMVLGGISQFFPASMSSIIVGIYVILFGLIVGGLEFLPNVPDYVYRYASFLFSFLGRGA FYIFVGCILLHDWVLRYIAGSIIGFIGLGYLALEFIPSIEPPSNMRENDQGWGAEQV* |
| Coding | >Ani_SJS72_1|g8149.t1 ATGGATCTTTCTAACATCTTTCGAATTGTTAACATCGCCGTTGGCGTGTTGATGGTTCTCGGTGGTATCTCGCAA TTTTTCCCTGCGTCTATGAGCTCCATCATCGTCGGCATTTACGTGATTCTCTTTGGTCTCATTGTCGGTGGGTTG GAATTCCTGCCCAACGTTCCCGACTACGTTTACCGCTACGCGTCCTTCCTTTTCTCTTTCCTGGGACGTGGTGCT TTCTACATCTTCGTTGGATGTATCCTGCTGCACGACTGGGTTTTGCGGTACATTGCCGGCTCCATCATCGGATTC ATCGGCCTGGGCTACCTGGCCCTGGAGTTCATTCCCTCCATCGAGCCCCCTTCCAACATGCGTGAAAACGACCAG GGCTGGGGCGCCGAGCAGGTCTAA |
| Transcript | >Ani_SJS72_1|g8149.t1 ATGGATCTTTCTAACATCTTTCGAATTGTTAACATCGCCGTTGGCGTGTTGATGGTTCTCGGTGGTATCTCGCAA TTTTTCCCTGCGTCTATGAGCTCCATCATCGTCGGCATTTACGTGATTCTCTTTGGTCTCATTGTCGGTGGGTTG GAATTCCTGCCCAACGTTCCCGACTACGTTTACCGCTACGCGTCCTTCCTTTTCTCTTTCCTGGGACGTGGTGCT TTCTACATCTTCGTTGGATGTATCCTGCTGCACGACTGGGTTTTGCGGTACATTGCCGGCTCCATCATCGGATTC ATCGGCCTGGGCTACCTGGCCCTGGAGTTCATTCCCTCCATCGAGCCCCCTTCCAACATGCGTGAAAACGACCAG GGCTGGGGCGCCGAGCAGGTCTAA |
| Gene | >Ani_SJS72_1|g8149.t1 ATGGATCTTTCTAACATCTTGTACGTCGACGATGGCCTTGCATCGCATACATTTTTGGTGAAATGTGCTCTAATT CCAACGGCTGCAGTCGAATTGTTAACATCGCCGTTGGCGTGTTGATGGTTCTCGGTGGTATCTCGCAATTTTTCC CTGCGTCTATGAGCTCCATCATCGTCGGCATTTACGTGATTCTCTTTGGTCTCAGTAAGTCTCAGATCAGGCAGC AGTATAGTGCATATGACAGCATACTTACACCATGGCTTTAGTTGTCGGTGGGTTGGAATTCCTGCCCAACGTTCC CGACTACGTTTACCGCTACGCGTCCTTCCTTTTCTCTTTCCTGGGACGTGGTGCTTGTAAGTCACACTATCCGTG ATTGCCGTAGATCGCTGCTAATGAGTTGACCACTTGCGTAGTCTACATCTTCGTTGGATGTATCCTGCTGCACGA CTGGGTTTTGCGGTACATTGCCGGCTCCATCATCGGATTCATCGGCCTGGGCTACCTGGCCCTGGAGTTCATTCC CTCCATCGAGCCCCCTTCCAACATGCGTGAAAACGACCAGGGCTGGGGCGCCGAGCAGGTCTAA |