© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g7927.t1 |
| Gene name | |
| Location | scaffold_068:166900..168893 |
| Strand | + |
| Gene length (bp) | 1993 |
| Transcript length (bp) | 1938 |
| Coding sequence length (bp) | 1938 |
| Protein length (aa) | 646 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02386 | TrkH | Cation transport protein | 8.9E-123 | 244 | 612 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008324 | cation transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0006812 | cation transport | Yes |
| GO:0006811 | ion transport | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 47 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 43 | 22 |
| 2 | 77 | 99 | 22 |
| 3 | 263 | 285 | 22 |
| 4 | 336 | 358 | 22 |
| 5 | 395 | 417 | 22 |
| 6 | 455 | 477 | 22 |
| 7 | 515 | 534 | 19 |
| 8 | 544 | 566 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g7927.t1 MPPRESVVDNPKSPLRRCHHYIYIISWALVSSLILYCAGGLSYVDALLLASGAATQTGLNTVDLNRLHVVQQVTL LVVSMVTNVIFVHSLLVVIRLYWFRKRFKRAIHEAKMMCRAQRNTLNQRLADVENGHYRTFSRERPSEEEPLLST VTEESTTASPSESPGGRRYGATGSTSPHITFCETDAEHEVKQRRRSYSGTWSRRSLPEIDSPQRRRSFSEMQNDM PPLPSLMWQSSIASYSDWNEAQKEELGGIEYRALKTLFVILVCYYVIIHLLGALLFLVWILPNRHYGQILAENGI SRPWWAIFTAGSAFNDLGFTLTPNSMGSFNTAVFPLLVMTFLIVLGNTGFPCMLRFIIWTLSQFTTYGSPLDDEL QFLLDHPRRCFTLLFPSTETWRLAAVLLLINAIDLIIFYTLQEFPHPSPISAGLRLVNGLFQIASTRTAGFTIAS LGTLHPAVQVSFVGMMYISAFPIAIAMRKTNVYEERSLGIYNEEYDEHDKPHQSDSLGAHIQRQLGFDLWFVMLG FFFVAVAEGKRLQENRTDIAFSLFPILFEIVSAYGTVGLSMGYPGTETSLCREFNGLSKVIVIAMQVRGRHRGLP HALDHAILLPCDLVEPDEQGRRPEWWWKRWLRKKSSDLGNLFTHD* |
| Coding | >Ani_SJS72_1|g7927.t1 ATGCCCCCACGCGAGTCCGTGGTTGACAATCCCAAGTCACCCCTACGCCGTTGTCACCACTACATCTACATCATC TCCTGGGCCCTAGTATCGTCACTTATTCTTTACTGCGCCGGAGGACTATCTTACGTCGATGCCTTGCTTCTCGCC TCCGGCGCAGCCACACAAACCGGCCTCAACACGGTAGATCTCAATCGCCTCCATGTGGTTCAACAGGTCACCCTG TTGGTGGTGTCGATGGTCACCAATGTCATCTTTGTACACTCGCTACTTGTGGTGATTCGGCTCTATTGGTTCCGG AAACGATTCAAGAGAGCCATTCATGAGGCAAAAATGATGTGCCGCGCACAGCGGAACACCCTGAATCAAAGACTT GCAGACGTGGAGAATGGACATTATCGAACATTCTCGCGCGAAAGACCATCGGAGGAGGAGCCTTTACTTTCAACC GTCACCGAGGAGAGCACAACTGCCTCTCCTAGCGAGTCTCCTGGCGGCAGGAGGTATGGCGCAACCGGCTCCACG AGCCCGCACATCACCTTCTGTGAGACGGACGCTGAGCACGAGGTAAAACAACGTCGACGGTCATACTCCGGTACC TGGTCGCGCCGTTCCCTGCCTGAGATCGATAGTCCACAGCGGCGGCGATCATTTTCCGAGATGCAGAATGATATG CCGCCGCTGCCATCATTGATGTGGCAGTCGTCGATTGCCAGTTACTCCGACTGGAATGAAGCGCAAAAGGAGGAA CTTGGGGGTATTGAGTACCGAGCATTGAAGACATTGTTTGTCATTCTTGTTTGCTATTATGTGATCATTCACCTG CTGGGAGCATTGCTCTTCCTGGTATGGATTCTACCAAATAGACACTACGGTCAGATCCTCGCAGAGAATGGCATC AGTCGGCCTTGGTGGGCTATTTTCACCGCTGGCTCAGCCTTCAATGACCTGGGATTCACATTGACTCCAAACTCG ATGGGGTCGTTCAACACCGCGGTATTCCCCCTACTTGTGATGACCTTTCTCATTGTGCTCGGGAATACCGGGTTC CCATGCATGCTCCGCTTCATCATATGGACACTATCGCAGTTCACTACATACGGCAGTCCTCTCGACGACGAGCTC CAATTTCTCCTAGATCATCCCCGACGCTGCTTCACGCTGCTTTTTCCCAGTACAGAGACCTGGCGACTCGCCGCA GTCCTCCTGCTCATCAATGCTATAGACTTGATCATCTTCTACACTCTCCAAGAATTCCCCCACCCTAGCCCCATA TCAGCCGGTCTCCGTCTCGTCAACGGGCTATTCCAAATCGCCTCCACCCGTACCGCCGGCTTCACCATCGCCTCA CTAGGCACCCTCCACCCAGCCGTACAAGTCTCGTTCGTGGGGATGATGTACATCTCCGCATTTCCCATTGCGATC GCCATGCGCAAAACCAACGTCTATGAAGAACGCAGCCTCGGCATCTACAACGAAGAGTACGACGAGCATGACAAG CCGCACCAATCCGACTCCCTAGGCGCTCACATCCAACGTCAGCTGGGATTCGATCTGTGGTTTGTCATGCTAGGC TTTTTCTTTGTTGCAGTCGCCGAGGGGAAACGCCTCCAGGAGAACCGCACTGACATTGCGTTCTCGCTCTTCCCT ATCCTGTTTGAAATCGTGTCTGCATACGGCACTGTGGGCTTATCAATGGGTTACCCGGGTACCGAGACGAGTCTG TGTCGGGAGTTCAATGGCTTGTCCAAGGTAATTGTCATTGCGATGCAGGTGCGTGGGCGCCATCGTGGTCTACCA CATGCGCTGGATCATGCGATCCTGTTGCCGTGTGATTTGGTGGAGCCGGACGAGCAGGGCCGGAGGCCAGAGTGG TGGTGGAAACGGTGGCTCAGGAAGAAGAGCTCTGATCTGGGAAACTTGTTCACGCATGACTGA |
| Transcript | >Ani_SJS72_1|g7927.t1 ATGCCCCCACGCGAGTCCGTGGTTGACAATCCCAAGTCACCCCTACGCCGTTGTCACCACTACATCTACATCATC TCCTGGGCCCTAGTATCGTCACTTATTCTTTACTGCGCCGGAGGACTATCTTACGTCGATGCCTTGCTTCTCGCC TCCGGCGCAGCCACACAAACCGGCCTCAACACGGTAGATCTCAATCGCCTCCATGTGGTTCAACAGGTCACCCTG TTGGTGGTGTCGATGGTCACCAATGTCATCTTTGTACACTCGCTACTTGTGGTGATTCGGCTCTATTGGTTCCGG AAACGATTCAAGAGAGCCATTCATGAGGCAAAAATGATGTGCCGCGCACAGCGGAACACCCTGAATCAAAGACTT GCAGACGTGGAGAATGGACATTATCGAACATTCTCGCGCGAAAGACCATCGGAGGAGGAGCCTTTACTTTCAACC GTCACCGAGGAGAGCACAACTGCCTCTCCTAGCGAGTCTCCTGGCGGCAGGAGGTATGGCGCAACCGGCTCCACG AGCCCGCACATCACCTTCTGTGAGACGGACGCTGAGCACGAGGTAAAACAACGTCGACGGTCATACTCCGGTACC TGGTCGCGCCGTTCCCTGCCTGAGATCGATAGTCCACAGCGGCGGCGATCATTTTCCGAGATGCAGAATGATATG CCGCCGCTGCCATCATTGATGTGGCAGTCGTCGATTGCCAGTTACTCCGACTGGAATGAAGCGCAAAAGGAGGAA CTTGGGGGTATTGAGTACCGAGCATTGAAGACATTGTTTGTCATTCTTGTTTGCTATTATGTGATCATTCACCTG CTGGGAGCATTGCTCTTCCTGGTATGGATTCTACCAAATAGACACTACGGTCAGATCCTCGCAGAGAATGGCATC AGTCGGCCTTGGTGGGCTATTTTCACCGCTGGCTCAGCCTTCAATGACCTGGGATTCACATTGACTCCAAACTCG ATGGGGTCGTTCAACACCGCGGTATTCCCCCTACTTGTGATGACCTTTCTCATTGTGCTCGGGAATACCGGGTTC CCATGCATGCTCCGCTTCATCATATGGACACTATCGCAGTTCACTACATACGGCAGTCCTCTCGACGACGAGCTC CAATTTCTCCTAGATCATCCCCGACGCTGCTTCACGCTGCTTTTTCCCAGTACAGAGACCTGGCGACTCGCCGCA GTCCTCCTGCTCATCAATGCTATAGACTTGATCATCTTCTACACTCTCCAAGAATTCCCCCACCCTAGCCCCATA TCAGCCGGTCTCCGTCTCGTCAACGGGCTATTCCAAATCGCCTCCACCCGTACCGCCGGCTTCACCATCGCCTCA CTAGGCACCCTCCACCCAGCCGTACAAGTCTCGTTCGTGGGGATGATGTACATCTCCGCATTTCCCATTGCGATC GCCATGCGCAAAACCAACGTCTATGAAGAACGCAGCCTCGGCATCTACAACGAAGAGTACGACGAGCATGACAAG CCGCACCAATCCGACTCCCTAGGCGCTCACATCCAACGTCAGCTGGGATTCGATCTGTGGTTTGTCATGCTAGGC TTTTTCTTTGTTGCAGTCGCCGAGGGGAAACGCCTCCAGGAGAACCGCACTGACATTGCGTTCTCGCTCTTCCCT ATCCTGTTTGAAATCGTGTCTGCATACGGCACTGTGGGCTTATCAATGGGTTACCCGGGTACCGAGACGAGTCTG TGTCGGGAGTTCAATGGCTTGTCCAAGGTAATTGTCATTGCGATGCAGGTGCGTGGGCGCCATCGTGGTCTACCA CATGCGCTGGATCATGCGATCCTGTTGCCGTGTGATTTGGTGGAGCCGGACGAGCAGGGCCGGAGGCCAGAGTGG TGGTGGAAACGGTGGCTCAGGAAGAAGAGCTCTGATCTGGGAAACTTGTTCACGCATGACTGA |
| Gene | >Ani_SJS72_1|g7927.t1 ATGCCCCCACGCGAGTCCGTGGTTGACAATCCCAAGTCACCCCTACGCCGTTGTCACCACTACATCTACATCATC TCCTGGGCCCTAGTATCGTCACTTATTCTTTACTGCGCCGGAGGACTATCTTACGTCGATGCCTTGCTTCTCGCC TCCGGCGCAGCCACACAAACCGGCCTCAACACGGTAGATCTCAATCGCCTCCATGTGGTTCAACAGGTCACCCTG TTGGTGGTGTCGATGGTCACCAATGTCATCTTTGTACACTCGCTACTTGTGGTGATTCGGCTCTATTGGTTCCGG AAACGATTCAAGAGAGCCATTCATGAGGCAAAAATGATGTGCCGCGCACAGCGGAACACCCTGAATCAAAGACTT GCAGACGTGGAGAATGGACATTATCGAACATTCTCGCGCGAAAGACCATCGGAGGAGGAGCCTTTACTTTCAACC GTCACCGAGGAGAGCACAACTGCCTCTCCTAGCGAGTCTCCTGGCGGCAGGAGGTATGGCGCAACCGGCTCCACG AGCCCGCACATCACCTTCTGTGAGACGGACGCTGAGCACGAGGTAAAACAACGTCGACGGTCATACTCCGGTACC TGGTCGCGCCGTTCCCTGCCTGAGATCGATAGTCCACAGCGGCGGCGATCATTTTCCGAGATGCAGAATGATATG CCGCCGCTGCCATCATTGATGTGGCAGTCGTCGATTGCCAGTTACTCCGACTGGAATGAAGCGCAAAAGGAGGAA CTTGGGGGTATTGAGTACCGAGCATTGAAGACATTGTTTGTCATTCTTGTTTGCTATTATGTGATCATTCACCTG CTGGGAGCATTGCTCTTCCTGGTATGGATTCTACCAAATAGACACTACGGTCAGATCCTCGCAGAGAATGGCATC AGTCGGCCTTGGTGGGCTATTTTCACCGCTGGCTCAGCCTTCAATGACCTGGGATTCACATTGACTCCAAACTCG ATGGGGTCGTTCAACACCGCGGTATTCCCCCTACTTGTGATGACCTTTCTCATTGTGCTCGGGAATACCGGGTTC CCATGCATGCTCCGCTTCATCATATGGACACTATCGCAGTTCACTACATACGGCAGTCCTCTCGACGACGAGCTC CAATTTCTCCTAGATCATCCCCGACGCTGCTTCACGCTGCTTTTTCCCAGTACAGAGACCTGGCGACTCGCCGCA GTCCTCCTGCTCATCAATGCTATAGACTTGATCATCTTCTACACTCTCCAAGAAGTAAGTTGGCCCAGAACAAAA CCGACCTGAACCATTTTACTCACCAGCTCATCAGTTCCCCCACCCTAGCCCCATATCAGCCGGTCTCCGTCTCGT CAACGGGCTATTCCAAATCGCCTCCACCCGTACCGCCGGCTTCACCATCGCCTCACTAGGCACCCTCCACCCAGC CGTACAAGTCTCGTTCGTGGGGATGATGTACATCTCCGCATTTCCCATTGCGATCGCCATGCGCAAAACCAACGT CTATGAAGAACGCAGCCTCGGCATCTACAACGAAGAGTACGACGAGCATGACAAGCCGCACCAATCCGACTCCCT AGGCGCTCACATCCAACGTCAGCTGGGATTCGATCTGTGGTTTGTCATGCTAGGCTTTTTCTTTGTTGCAGTCGC CGAGGGGAAACGCCTCCAGGAGAACCGCACTGACATTGCGTTCTCGCTCTTCCCTATCCTGTTTGAAATCGTGTC TGCATACGGCACTGTGGGCTTATCAATGGGTTACCCGGGTACCGAGACGAGTCTGTGTCGGGAGTTCAATGGCTT GTCCAAGGTAATTGTCATTGCGATGCAGGTGCGTGGGCGCCATCGTGGTCTACCACATGCGCTGGATCATGCGAT CCTGTTGCCGTGTGATTTGGTGGAGCCGGACGAGCAGGGCCGGAGGCCAGAGTGGTGGTGGAAACGGTGGCTCAG GAAGAAGAGCTCTGATCTGGGAAACTTGTTCACGCATGACTGA |