Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS72_1|g7891.t1
Gene name
Locationscaffold_068:10671..12043
Strand+
Gene length (bp)1372
Transcript length (bp)1140
Coding sequence length (bp)1140
Protein length (aa) 380

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00544 Pectate_lyase_4 Pectate lyase 3.2E-19 122 296

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

Domain # Start End Length
1 5 27 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS72_1|g7891.t1
MHYKLLFAAAAASLASAVSAAGVVGAAEGFAHGVTGGGSASPVYPTTTDELVSYLGDNEPRVIILDRTFDFTGTE
GTETTTGCAPWGTASQCQVAINLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVS
GAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSAT
CNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVN
TVVETPISGQLFSSPDANTNQQCASVFGRSCQLNAFGNSGSMSGSDTSIISKFAGKTIAAAHPPGNIAQWTMKNA
GQGK*
Coding >Ani_SJS72_1|g7891.t1
ATGCATTACAAACTGCTTTTTGCTGCTGCCGCAGCATCCTTGGCCAGCGCTGTCAGTGCCGCCGGTGTTGTTGGT
GCCGCCGAGGGTTTCGCCCATGGTGTCACTGGCGGTGGCAGCGCTTCCCCCGTCTATCCTACGACTACTGATGAG
CTGGTCTCTTACCTCGGAGATAACGAGCCCCGGGTGATTATCCTGGATAGAACCTTCGACTTCACCGGCACTGAG
GGTACTGAAACTACCACCGGATGTGCCCCCTGGGGAACTGCTTCCCAATGCCAGGTGGCCATCAACCTGCACAGC
TGGTGTGACAACTACCAGGCTAGCGCCCCCAAGGTATCCGTGACTTATGATAAGGCGGGTATCCTCCCCATTACG
GTCAACTCCAACAAAAGTATCGTTGGTCAGGGCACCAAGGGAGTCATCAAGGGCAAGGGTCTCCGTGTGGTCAGC
GGTGCCAAGAACGTCATCATCCAGAACATTGCCGTTACCGACATCAACCCCAAGTATGTCTGGGGTGGTGATGCC
ATTACTGTCGATGACTCTGATCTGGTCTGGATCGACCATGTGACCACTGCTCGCATTGGTCGCCAGCACATCGTT
CTGGGAACCAGCGCCGACAACCGCGTCACCATCTCCTACTCCCTCATCGATGGTCGCTCCGACTACTCTGCCACC
TGCAACGGCCACCACTACTGGGGCGTGTACCTGGACGGCAGCAACGACATGGTCACCCTTAAGGGCAACTACTTC
TACAACCTGAGCGGCCGCATGCCCAAGGTTCAGGGTAACACTCTGCTGCACGCCGTGAACAACCTCTTCCACAAC
TTTGACGGCCACGCCTTCGAAATCGGCACTGGTGGCTACGTCCTGGCCGAGGGTAACGTCTTCCAGGACGTTAAC
ACTGTGGTGGAGACGCCCATCAGCGGCCAGCTCTTCAGCTCCCCCGACGCCAACACCAACCAGCAGTGCGCCTCC
GTCTTCGGTCGTTCCTGCCAGCTCAACGCCTTCGGCAACTCCGGCTCGATGTCCGGATCGGACACCAGCATCATC
AGCAAGTTCGCTGGCAAGACCATTGCTGCGGCTCACCCCCCGGGTAACATTGCCCAGTGGACCATGAAGAACGCT
GGCCAGGGCAAATAA
Transcript >Ani_SJS72_1|g7891.t1
ATGCATTACAAACTGCTTTTTGCTGCTGCCGCAGCATCCTTGGCCAGCGCTGTCAGTGCCGCCGGTGTTGTTGGT
GCCGCCGAGGGTTTCGCCCATGGTGTCACTGGCGGTGGCAGCGCTTCCCCCGTCTATCCTACGACTACTGATGAG
CTGGTCTCTTACCTCGGAGATAACGAGCCCCGGGTGATTATCCTGGATAGAACCTTCGACTTCACCGGCACTGAG
GGTACTGAAACTACCACCGGATGTGCCCCCTGGGGAACTGCTTCCCAATGCCAGGTGGCCATCAACCTGCACAGC
TGGTGTGACAACTACCAGGCTAGCGCCCCCAAGGTATCCGTGACTTATGATAAGGCGGGTATCCTCCCCATTACG
GTCAACTCCAACAAAAGTATCGTTGGTCAGGGCACCAAGGGAGTCATCAAGGGCAAGGGTCTCCGTGTGGTCAGC
GGTGCCAAGAACGTCATCATCCAGAACATTGCCGTTACCGACATCAACCCCAAGTATGTCTGGGGTGGTGATGCC
ATTACTGTCGATGACTCTGATCTGGTCTGGATCGACCATGTGACCACTGCTCGCATTGGTCGCCAGCACATCGTT
CTGGGAACCAGCGCCGACAACCGCGTCACCATCTCCTACTCCCTCATCGATGGTCGCTCCGACTACTCTGCCACC
TGCAACGGCCACCACTACTGGGGCGTGTACCTGGACGGCAGCAACGACATGGTCACCCTTAAGGGCAACTACTTC
TACAACCTGAGCGGCCGCATGCCCAAGGTTCAGGGTAACACTCTGCTGCACGCCGTGAACAACCTCTTCCACAAC
TTTGACGGCCACGCCTTCGAAATCGGCACTGGTGGCTACGTCCTGGCCGAGGGTAACGTCTTCCAGGACGTTAAC
ACTGTGGTGGAGACGCCCATCAGCGGCCAGCTCTTCAGCTCCCCCGACGCCAACACCAACCAGCAGTGCGCCTCC
GTCTTCGGTCGTTCCTGCCAGCTCAACGCCTTCGGCAACTCCGGCTCGATGTCCGGATCGGACACCAGCATCATC
AGCAAGTTCGCTGGCAAGACCATTGCTGCGGCTCACCCCCCGGGTAACATTGCCCAGTGGACCATGAAGAACGCT
GGCCAGGGCAAATAA
Gene >Ani_SJS72_1|g7891.t1
ATGCATTACAAACTGCTTTTTGCTGCTGCCGCAGCATCCTTGGCCAGCGCTGTCAGTGCCGCCGGTGTTGTTGGT
GCCGCCGAGGGTTTCGCCCATGGTGTCACTGGCGGTGGCAGCGCTTCCCCCGTCTATCCTACGACTACTGATGAG
CTGGTCTCTTACCTCGGAGATAACGAGCCCCGGGTGATTATCCTGGATAGAACGTAGGTCGATCCTCAATTGGAA
ATGGATGGGTAGACGTGGGCCTAACAGGTTGATAATCCAGCTTCGACTTCACCGGCACTGAGGGTACTGAAACTA
CCACCGGATGTGCCCCCTGGGGAACTGCTTCCCAATGCCAGGTGGCCATCAACCTGCACAGCTGGTGTGACAACT
ACCAGGCTAGCGCCCCCAAGGTATCCGTGACTTAGTATGTTGTCCCCGTTCGATTGGTGACCCTGTCTTTCCATG
CTGATAGCCGTATAGTGATAAGGCGGGTATCCTCCCCATTACGGTCAACTCCAACAAAAGTATCGTTGGTCAGGG
CACCAAGGGAGTCATCAAGGGCAAGGGTCTCCGTGTGGTCAGCGGTGCCAAGAACGTCATCATCCAGTGAGTGCA
GAACATCGGTCTTAGGATGTGAAAAAACCCTTTGCTAATAAAGGCCAGGAACATTGCCGTTACCGACATCAACCC
CAAGTATGTCTGGGGTGGTGATGCCATTACTGTCGATGACTCTGATCTGGTCTGGATCGACCATGTGACCACTGC
TCGCATTGGTCGCCAGCACATCGTTCTGGGAACCAGCGCCGACAACCGCGTCACCATCTCCTACTCCCTCATCGA
TGGTCGCTCCGACTACTCTGCCACCTGCAACGGCCACCACTACTGGGGCGTGTACCTGGACGGCAGCAACGACAT
GGTCACCCTTAAGGGCAACTACTTCTACAACCTGAGCGGCCGCATGCCCAAGGTTCAGGGTAACACTCTGCTGCA
CGCCGTATGTCGCCTTGAGCCTCCTATATGATTTGCACATTACTGACAAGTCTGACTACAGGTGAACAACCTCTT
CCACAACTTTGACGGCCACGCCTTCGAAATCGGCACTGGTGGCTACGTCCTGGCCGAGGGTAACGTCTTCCAGGA
CGTTAACACTGTGGTGGAGACGCCCATCAGCGGCCAGCTCTTCAGCTCCCCCGACGCCAACACCAACCAGCAGTG
CGCCTCCGTCTTCGGTCGTTCCTGCCAGCTCAACGCCTTCGGCAACTCCGGCTCGATGTCCGGATCGGACACCAG
CATCATCAGCAAGTTCGCTGGCAAGACCATTGCTGCGGCTCACCCCCCGGGTAACATTGCCCAGTGGACCATGAA
GAACGCTGGCCAGGGCAAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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