Protein ID | Ani_SJS72_1|g7891.t1 |
Gene name | |
Location | scaffold_068:10671..12043 |
Strand | + |
Gene length (bp) | 1372 |
Transcript length (bp) | 1140 |
Coding sequence length (bp) | 1140 |
Protein length (aa) | 380 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00544 | Pectate_lyase_4 | Pectate lyase | 3.2E-19 | 122 | 296 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 21 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 5 | 27 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS72_1|g7891.t1 MHYKLLFAAAAASLASAVSAAGVVGAAEGFAHGVTGGGSASPVYPTTTDELVSYLGDNEPRVIILDRTFDFTGTE GTETTTGCAPWGTASQCQVAINLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVS GAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSAT CNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVN TVVETPISGQLFSSPDANTNQQCASVFGRSCQLNAFGNSGSMSGSDTSIISKFAGKTIAAAHPPGNIAQWTMKNA GQGK* |
Coding | >Ani_SJS72_1|g7891.t1 ATGCATTACAAACTGCTTTTTGCTGCTGCCGCAGCATCCTTGGCCAGCGCTGTCAGTGCCGCCGGTGTTGTTGGT GCCGCCGAGGGTTTCGCCCATGGTGTCACTGGCGGTGGCAGCGCTTCCCCCGTCTATCCTACGACTACTGATGAG CTGGTCTCTTACCTCGGAGATAACGAGCCCCGGGTGATTATCCTGGATAGAACCTTCGACTTCACCGGCACTGAG GGTACTGAAACTACCACCGGATGTGCCCCCTGGGGAACTGCTTCCCAATGCCAGGTGGCCATCAACCTGCACAGC TGGTGTGACAACTACCAGGCTAGCGCCCCCAAGGTATCCGTGACTTATGATAAGGCGGGTATCCTCCCCATTACG GTCAACTCCAACAAAAGTATCGTTGGTCAGGGCACCAAGGGAGTCATCAAGGGCAAGGGTCTCCGTGTGGTCAGC GGTGCCAAGAACGTCATCATCCAGAACATTGCCGTTACCGACATCAACCCCAAGTATGTCTGGGGTGGTGATGCC ATTACTGTCGATGACTCTGATCTGGTCTGGATCGACCATGTGACCACTGCTCGCATTGGTCGCCAGCACATCGTT CTGGGAACCAGCGCCGACAACCGCGTCACCATCTCCTACTCCCTCATCGATGGTCGCTCCGACTACTCTGCCACC TGCAACGGCCACCACTACTGGGGCGTGTACCTGGACGGCAGCAACGACATGGTCACCCTTAAGGGCAACTACTTC TACAACCTGAGCGGCCGCATGCCCAAGGTTCAGGGTAACACTCTGCTGCACGCCGTGAACAACCTCTTCCACAAC TTTGACGGCCACGCCTTCGAAATCGGCACTGGTGGCTACGTCCTGGCCGAGGGTAACGTCTTCCAGGACGTTAAC ACTGTGGTGGAGACGCCCATCAGCGGCCAGCTCTTCAGCTCCCCCGACGCCAACACCAACCAGCAGTGCGCCTCC GTCTTCGGTCGTTCCTGCCAGCTCAACGCCTTCGGCAACTCCGGCTCGATGTCCGGATCGGACACCAGCATCATC AGCAAGTTCGCTGGCAAGACCATTGCTGCGGCTCACCCCCCGGGTAACATTGCCCAGTGGACCATGAAGAACGCT GGCCAGGGCAAATAA |
Transcript | >Ani_SJS72_1|g7891.t1 ATGCATTACAAACTGCTTTTTGCTGCTGCCGCAGCATCCTTGGCCAGCGCTGTCAGTGCCGCCGGTGTTGTTGGT GCCGCCGAGGGTTTCGCCCATGGTGTCACTGGCGGTGGCAGCGCTTCCCCCGTCTATCCTACGACTACTGATGAG CTGGTCTCTTACCTCGGAGATAACGAGCCCCGGGTGATTATCCTGGATAGAACCTTCGACTTCACCGGCACTGAG GGTACTGAAACTACCACCGGATGTGCCCCCTGGGGAACTGCTTCCCAATGCCAGGTGGCCATCAACCTGCACAGC TGGTGTGACAACTACCAGGCTAGCGCCCCCAAGGTATCCGTGACTTATGATAAGGCGGGTATCCTCCCCATTACG GTCAACTCCAACAAAAGTATCGTTGGTCAGGGCACCAAGGGAGTCATCAAGGGCAAGGGTCTCCGTGTGGTCAGC GGTGCCAAGAACGTCATCATCCAGAACATTGCCGTTACCGACATCAACCCCAAGTATGTCTGGGGTGGTGATGCC ATTACTGTCGATGACTCTGATCTGGTCTGGATCGACCATGTGACCACTGCTCGCATTGGTCGCCAGCACATCGTT CTGGGAACCAGCGCCGACAACCGCGTCACCATCTCCTACTCCCTCATCGATGGTCGCTCCGACTACTCTGCCACC TGCAACGGCCACCACTACTGGGGCGTGTACCTGGACGGCAGCAACGACATGGTCACCCTTAAGGGCAACTACTTC TACAACCTGAGCGGCCGCATGCCCAAGGTTCAGGGTAACACTCTGCTGCACGCCGTGAACAACCTCTTCCACAAC TTTGACGGCCACGCCTTCGAAATCGGCACTGGTGGCTACGTCCTGGCCGAGGGTAACGTCTTCCAGGACGTTAAC ACTGTGGTGGAGACGCCCATCAGCGGCCAGCTCTTCAGCTCCCCCGACGCCAACACCAACCAGCAGTGCGCCTCC GTCTTCGGTCGTTCCTGCCAGCTCAACGCCTTCGGCAACTCCGGCTCGATGTCCGGATCGGACACCAGCATCATC AGCAAGTTCGCTGGCAAGACCATTGCTGCGGCTCACCCCCCGGGTAACATTGCCCAGTGGACCATGAAGAACGCT GGCCAGGGCAAATAA |
Gene | >Ani_SJS72_1|g7891.t1 ATGCATTACAAACTGCTTTTTGCTGCTGCCGCAGCATCCTTGGCCAGCGCTGTCAGTGCCGCCGGTGTTGTTGGT GCCGCCGAGGGTTTCGCCCATGGTGTCACTGGCGGTGGCAGCGCTTCCCCCGTCTATCCTACGACTACTGATGAG CTGGTCTCTTACCTCGGAGATAACGAGCCCCGGGTGATTATCCTGGATAGAACGTAGGTCGATCCTCAATTGGAA ATGGATGGGTAGACGTGGGCCTAACAGGTTGATAATCCAGCTTCGACTTCACCGGCACTGAGGGTACTGAAACTA CCACCGGATGTGCCCCCTGGGGAACTGCTTCCCAATGCCAGGTGGCCATCAACCTGCACAGCTGGTGTGACAACT ACCAGGCTAGCGCCCCCAAGGTATCCGTGACTTAGTATGTTGTCCCCGTTCGATTGGTGACCCTGTCTTTCCATG CTGATAGCCGTATAGTGATAAGGCGGGTATCCTCCCCATTACGGTCAACTCCAACAAAAGTATCGTTGGTCAGGG CACCAAGGGAGTCATCAAGGGCAAGGGTCTCCGTGTGGTCAGCGGTGCCAAGAACGTCATCATCCAGTGAGTGCA GAACATCGGTCTTAGGATGTGAAAAAACCCTTTGCTAATAAAGGCCAGGAACATTGCCGTTACCGACATCAACCC CAAGTATGTCTGGGGTGGTGATGCCATTACTGTCGATGACTCTGATCTGGTCTGGATCGACCATGTGACCACTGC TCGCATTGGTCGCCAGCACATCGTTCTGGGAACCAGCGCCGACAACCGCGTCACCATCTCCTACTCCCTCATCGA TGGTCGCTCCGACTACTCTGCCACCTGCAACGGCCACCACTACTGGGGCGTGTACCTGGACGGCAGCAACGACAT GGTCACCCTTAAGGGCAACTACTTCTACAACCTGAGCGGCCGCATGCCCAAGGTTCAGGGTAACACTCTGCTGCA CGCCGTATGTCGCCTTGAGCCTCCTATATGATTTGCACATTACTGACAAGTCTGACTACAGGTGAACAACCTCTT CCACAACTTTGACGGCCACGCCTTCGAAATCGGCACTGGTGGCTACGTCCTGGCCGAGGGTAACGTCTTCCAGGA CGTTAACACTGTGGTGGAGACGCCCATCAGCGGCCAGCTCTTCAGCTCCCCCGACGCCAACACCAACCAGCAGTG CGCCTCCGTCTTCGGTCGTTCCTGCCAGCTCAACGCCTTCGGCAACTCCGGCTCGATGTCCGGATCGGACACCAG CATCATCAGCAAGTTCGCTGGCAAGACCATTGCTGCGGCTCACCCCCCGGGTAACATTGCCCAGTGGACCATGAA GAACGCTGGCCAGGGCAAATAA |