© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g7891.t1 |
| Gene name | |
| Location | scaffold_068:10671..12043 |
| Strand | + |
| Gene length (bp) | 1372 |
| Transcript length (bp) | 1140 |
| Coding sequence length (bp) | 1140 |
| Protein length (aa) | 380 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00544 | Pectate_lyase_4 | Pectate lyase | 3.2E-19 | 122 | 296 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 20 | 0.999668 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| CAZyme category | E-value | Start | End |
|---|---|---|---|
| PL1_4 | 2.3E-88 | 114 | 298 |
| Gene cluster ID | Type of secondary metabolism gene |
|---|---|
| Cluster 57 | (None) |
| Orthofinder run ID | 3 |
| Orthogroup | 6083 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g7891.t1 MHYKLLFAAAAASLASAVSAAGVVGAAEGFAHGVTGGGSASPVYPTTTDELVSYLGDNEPRVIILDRTFDFTGTE GTETTTGCAPWGTASQCQVAINLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVS GAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSAT CNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVN TVVETPISGQLFSSPDANTNQQCASVFGRSCQLNAFGNSGSMSGSDTSIISKFAGKTIAAAHPPGNIAQWTMKNA GQGK* |
| Coding | >Ani_SJS72_1|g7891.t1 ATGCATTACAAACTGCTTTTTGCTGCTGCCGCAGCATCCTTGGCCAGCGCTGTCAGTGCCGCCGGTGTTGTTGGT GCCGCCGAGGGTTTCGCCCATGGTGTCACTGGCGGTGGCAGCGCTTCCCCCGTCTATCCTACGACTACTGATGAG CTGGTCTCTTACCTCGGAGATAACGAGCCCCGGGTGATTATCCTGGATAGAACCTTCGACTTCACCGGCACTGAG GGTACTGAAACTACCACCGGATGTGCCCCCTGGGGAACTGCTTCCCAATGCCAGGTGGCCATCAACCTGCACAGC TGGTGTGACAACTACCAGGCTAGCGCCCCCAAGGTATCCGTGACTTATGATAAGGCGGGTATCCTCCCCATTACG GTCAACTCCAACAAAAGTATCGTTGGTCAGGGCACCAAGGGAGTCATCAAGGGCAAGGGTCTCCGTGTGGTCAGC GGTGCCAAGAACGTCATCATCCAGAACATTGCCGTTACCGACATCAACCCCAAGTATGTCTGGGGTGGTGATGCC ATTACTGTCGATGACTCTGATCTGGTCTGGATCGACCATGTGACCACTGCTCGCATTGGTCGCCAGCACATCGTT CTGGGAACCAGCGCCGACAACCGCGTCACCATCTCCTACTCCCTCATCGATGGTCGCTCCGACTACTCTGCCACC TGCAACGGCCACCACTACTGGGGCGTGTACCTGGACGGCAGCAACGACATGGTCACCCTTAAGGGCAACTACTTC TACAACCTGAGCGGCCGCATGCCCAAGGTTCAGGGTAACACTCTGCTGCACGCCGTGAACAACCTCTTCCACAAC TTTGACGGCCACGCCTTCGAAATCGGCACTGGTGGCTACGTCCTGGCCGAGGGTAACGTCTTCCAGGACGTTAAC ACTGTGGTGGAGACGCCCATCAGCGGCCAGCTCTTCAGCTCCCCCGACGCCAACACCAACCAGCAGTGCGCCTCC GTCTTCGGTCGTTCCTGCCAGCTCAACGCCTTCGGCAACTCCGGCTCGATGTCCGGATCGGACACCAGCATCATC AGCAAGTTCGCTGGCAAGACCATTGCTGCGGCTCACCCCCCGGGTAACATTGCCCAGTGGACCATGAAGAACGCT GGCCAGGGCAAATAA |
| Transcript | >Ani_SJS72_1|g7891.t1 ATGCATTACAAACTGCTTTTTGCTGCTGCCGCAGCATCCTTGGCCAGCGCTGTCAGTGCCGCCGGTGTTGTTGGT GCCGCCGAGGGTTTCGCCCATGGTGTCACTGGCGGTGGCAGCGCTTCCCCCGTCTATCCTACGACTACTGATGAG CTGGTCTCTTACCTCGGAGATAACGAGCCCCGGGTGATTATCCTGGATAGAACCTTCGACTTCACCGGCACTGAG GGTACTGAAACTACCACCGGATGTGCCCCCTGGGGAACTGCTTCCCAATGCCAGGTGGCCATCAACCTGCACAGC TGGTGTGACAACTACCAGGCTAGCGCCCCCAAGGTATCCGTGACTTATGATAAGGCGGGTATCCTCCCCATTACG GTCAACTCCAACAAAAGTATCGTTGGTCAGGGCACCAAGGGAGTCATCAAGGGCAAGGGTCTCCGTGTGGTCAGC GGTGCCAAGAACGTCATCATCCAGAACATTGCCGTTACCGACATCAACCCCAAGTATGTCTGGGGTGGTGATGCC ATTACTGTCGATGACTCTGATCTGGTCTGGATCGACCATGTGACCACTGCTCGCATTGGTCGCCAGCACATCGTT CTGGGAACCAGCGCCGACAACCGCGTCACCATCTCCTACTCCCTCATCGATGGTCGCTCCGACTACTCTGCCACC TGCAACGGCCACCACTACTGGGGCGTGTACCTGGACGGCAGCAACGACATGGTCACCCTTAAGGGCAACTACTTC TACAACCTGAGCGGCCGCATGCCCAAGGTTCAGGGTAACACTCTGCTGCACGCCGTGAACAACCTCTTCCACAAC TTTGACGGCCACGCCTTCGAAATCGGCACTGGTGGCTACGTCCTGGCCGAGGGTAACGTCTTCCAGGACGTTAAC ACTGTGGTGGAGACGCCCATCAGCGGCCAGCTCTTCAGCTCCCCCGACGCCAACACCAACCAGCAGTGCGCCTCC GTCTTCGGTCGTTCCTGCCAGCTCAACGCCTTCGGCAACTCCGGCTCGATGTCCGGATCGGACACCAGCATCATC AGCAAGTTCGCTGGCAAGACCATTGCTGCGGCTCACCCCCCGGGTAACATTGCCCAGTGGACCATGAAGAACGCT GGCCAGGGCAAATAA |
| Gene | >Ani_SJS72_1|g7891.t1 ATGCATTACAAACTGCTTTTTGCTGCTGCCGCAGCATCCTTGGCCAGCGCTGTCAGTGCCGCCGGTGTTGTTGGT GCCGCCGAGGGTTTCGCCCATGGTGTCACTGGCGGTGGCAGCGCTTCCCCCGTCTATCCTACGACTACTGATGAG CTGGTCTCTTACCTCGGAGATAACGAGCCCCGGGTGATTATCCTGGATAGAACGTAGGTCGATCCTCAATTGGAA ATGGATGGGTAGACGTGGGCCTAACAGGTTGATAATCCAGCTTCGACTTCACCGGCACTGAGGGTACTGAAACTA CCACCGGATGTGCCCCCTGGGGAACTGCTTCCCAATGCCAGGTGGCCATCAACCTGCACAGCTGGTGTGACAACT ACCAGGCTAGCGCCCCCAAGGTATCCGTGACTTAGTATGTTGTCCCCGTTCGATTGGTGACCCTGTCTTTCCATG CTGATAGCCGTATAGTGATAAGGCGGGTATCCTCCCCATTACGGTCAACTCCAACAAAAGTATCGTTGGTCAGGG CACCAAGGGAGTCATCAAGGGCAAGGGTCTCCGTGTGGTCAGCGGTGCCAAGAACGTCATCATCCAGTGAGTGCA GAACATCGGTCTTAGGATGTGAAAAAACCCTTTGCTAATAAAGGCCAGGAACATTGCCGTTACCGACATCAACCC CAAGTATGTCTGGGGTGGTGATGCCATTACTGTCGATGACTCTGATCTGGTCTGGATCGACCATGTGACCACTGC TCGCATTGGTCGCCAGCACATCGTTCTGGGAACCAGCGCCGACAACCGCGTCACCATCTCCTACTCCCTCATCGA TGGTCGCTCCGACTACTCTGCCACCTGCAACGGCCACCACTACTGGGGCGTGTACCTGGACGGCAGCAACGACAT GGTCACCCTTAAGGGCAACTACTTCTACAACCTGAGCGGCCGCATGCCCAAGGTTCAGGGTAACACTCTGCTGCA CGCCGTATGTCGCCTTGAGCCTCCTATATGATTTGCACATTACTGACAAGTCTGACTACAGGTGAACAACCTCTT CCACAACTTTGACGGCCACGCCTTCGAAATCGGCACTGGTGGCTACGTCCTGGCCGAGGGTAACGTCTTCCAGGA CGTTAACACTGTGGTGGAGACGCCCATCAGCGGCCAGCTCTTCAGCTCCCCCGACGCCAACACCAACCAGCAGTG CGCCTCCGTCTTCGGTCGTTCCTGCCAGCTCAACGCCTTCGGCAACTCCGGCTCGATGTCCGGATCGGACACCAG CATCATCAGCAAGTTCGCTGGCAAGACCATTGCTGCGGCTCACCCCCCGGGTAACATTGCCCAGTGGACCATGAA GAACGCTGGCCAGGGCAAATAA |