© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g764.t1 |
| Gene name | |
| Location | scaffold_003:619890..621405 |
| Strand | - |
| Gene length (bp) | 1515 |
| Transcript length (bp) | 1437 |
| Coding sequence length (bp) | 1437 |
| Protein length (aa) | 479 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08491 | SE | Squalene epoxidase | 2.1E-98 | 180 | 455 |
| PF01494 | FAD_binding_3 | FAD binding domain | 2.9E-10 | 27 | 340 |
| PF01266 | DAO | FAD dependent oxidoreductase | 1.5E-06 | 28 | 58 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0071949 | FAD binding | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0004506 | squalene monooxygenase activity | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005575 | cellular_component | No |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | No |
| GO:0004497 | monooxygenase activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0000166 | nucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0043168 | anion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | No |
| GO:0043167 | ion binding | No |
| GO:0036094 | small molecule binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 29 | 46 | 17 |
| 2 | 403 | 420 | 17 |
| 3 | 425 | 442 | 17 |
| 4 | 452 | 474 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g764.t1 MAAAVANGHTTSSADVAKQRRLIHHHADVVIVGAGILGCALAVALGRQGRSVLLLEASMKEPDRIVGELLQPGGV EALEKLGLADCLEDIDAIPAKGYHVTYFGKPVSFTYPKASPSSPAPQGCCFHHGRFVMKLRAAALACPNVTVVET KATDLVTCSHTKQVLGVECVTGDMKDCYFGHLTVVADGYASKLRKQYHSNTPKVRSRFWGLELIDADLPKPYHGH VLLSDNAPILVYQIGTHETRILIDIPENLPSASVKNGGVKNHLRNVVLPSLPECIQPSFVAALDKGQLRSMPNSY LPSTPNKTPGLVILGDALNMRHPLTGGGMTVAFNDVVVLRDLLSPEKVPSLANHERVLQQLSSFRWQRKKTCSVI NILAQALYALFAAKDENMRALQRGCFRYFELGMTSGPIGLLGGLIKKPDVLFWHFFSVAFLSLWLVITEPPFYKL PLALLKCIMVFWTACVVIFPYMLIEAFC* |
| Coding | >Ani_SJS72_1|g764.t1 ATGGCCGCCGCTGTCGCCAACGGCCATACCACTTCCTCCGCCGATGTCGCCAAACAGCGCAGGCTGATCCACCAC CATGCCGATGTCGTGATTGTAGGCGCCGGGATCCTAGGTTGTGCATTGGCGGTCGCACTTGGAAGACAAGGGCGC AGCGTCCTGCTGCTGGAGGCGTCCATGAAGGAGCCTGACCGGATCGTGGGAGAGTTACTACAGCCTGGCGGTGTC GAGGCGCTTGAGAAACTGGGTCTTGCTGATTGTCTCGAAGACATTGATGCCATCCCAGCGAAAGGCTACCATGTG ACATACTTTGGGAAACCCGTCTCGTTCACCTACCCCAAAGCCTCCCCGTCGTCGCCCGCCCCGCAAGGGTGTTGT TTCCACCATGGCCGCTTCGTCATGAAGCTGCGAGCTGCTGCGCTGGCCTGCCCCAATGTCACAGTGGTGGAGACC AAGGCCACCGACTTGGTCACTTGCTCCCACACCAAGCAGGTTCTTGGTGTCGAGTGTGTGACCGGCGACATGAAG GATTGCTACTTTGGCCATCTTACGGTGGTGGCCGATGGCTACGCCTCCAAACTCCGCAAGCAATACCATTCCAAT ACTCCCAAGGTCCGCTCCAGGTTCTGGGGCTTGGAATTGATCGATGCAGACCTTCCCAAGCCTTATCATGGCCAC GTCCTCCTTAGCGACAATGCCCCTATCCTCGTCTACCAAATTGGCACCCATGAAACCCGCATCCTCATCGACATC CCAGAGAACCTCCCGTCGGCCTCCGTCAAGAACGGCGGCGTCAAGAACCACCTTCGCAACGTCGTTCTCCCGTCC CTTCCCGAATGCATTCAGCCTTCATTCGTGGCTGCGTTGGACAAAGGTCAGCTGCGGTCAATGCCGAACTCATAT CTGCCTAGTACCCCGAACAAGACTCCCGGTCTGGTCATCCTGGGCGATGCGCTCAACATGCGGCATCCGCTGACC GGTGGAGGAATGACCGTCGCATTCAACGACGTTGTGGTCCTTCGTGATCTGCTGAGTCCGGAGAAGGTCCCTTCC CTCGCTAATCATGAGCGCGTCCTGCAACAGCTGTCCTCCTTCCGTTGGCAACGGAAGAAAACATGTTCAGTCATC AACATTTTGGCGCAGGCTCTCTATGCCTTGTTTGCTGCTAAAGACGAGAATATGCGTGCTCTCCAACGGGGCTGC TTCCGTTACTTTGAGTTAGGAATGACCAGCGGGCCCATAGGCCTTCTGGGTGGACTGATCAAAAAGCCGGACGTT CTATTCTGGCATTTCTTCAGTGTCGCCTTTCTCTCTCTGTGGCTCGTCATCACCGAGCCACCTTTCTACAAGCTG CCTCTGGCTTTGTTGAAATGCATTATGGTCTTTTGGACAGCATGCGTCGTGATCTTCCCCTACATGCTGATAGAG GCATTCTGCTAA |
| Transcript | >Ani_SJS72_1|g764.t1 ATGGCCGCCGCTGTCGCCAACGGCCATACCACTTCCTCCGCCGATGTCGCCAAACAGCGCAGGCTGATCCACCAC CATGCCGATGTCGTGATTGTAGGCGCCGGGATCCTAGGTTGTGCATTGGCGGTCGCACTTGGAAGACAAGGGCGC AGCGTCCTGCTGCTGGAGGCGTCCATGAAGGAGCCTGACCGGATCGTGGGAGAGTTACTACAGCCTGGCGGTGTC GAGGCGCTTGAGAAACTGGGTCTTGCTGATTGTCTCGAAGACATTGATGCCATCCCAGCGAAAGGCTACCATGTG ACATACTTTGGGAAACCCGTCTCGTTCACCTACCCCAAAGCCTCCCCGTCGTCGCCCGCCCCGCAAGGGTGTTGT TTCCACCATGGCCGCTTCGTCATGAAGCTGCGAGCTGCTGCGCTGGCCTGCCCCAATGTCACAGTGGTGGAGACC AAGGCCACCGACTTGGTCACTTGCTCCCACACCAAGCAGGTTCTTGGTGTCGAGTGTGTGACCGGCGACATGAAG GATTGCTACTTTGGCCATCTTACGGTGGTGGCCGATGGCTACGCCTCCAAACTCCGCAAGCAATACCATTCCAAT ACTCCCAAGGTCCGCTCCAGGTTCTGGGGCTTGGAATTGATCGATGCAGACCTTCCCAAGCCTTATCATGGCCAC GTCCTCCTTAGCGACAATGCCCCTATCCTCGTCTACCAAATTGGCACCCATGAAACCCGCATCCTCATCGACATC CCAGAGAACCTCCCGTCGGCCTCCGTCAAGAACGGCGGCGTCAAGAACCACCTTCGCAACGTCGTTCTCCCGTCC CTTCCCGAATGCATTCAGCCTTCATTCGTGGCTGCGTTGGACAAAGGTCAGCTGCGGTCAATGCCGAACTCATAT CTGCCTAGTACCCCGAACAAGACTCCCGGTCTGGTCATCCTGGGCGATGCGCTCAACATGCGGCATCCGCTGACC GGTGGAGGAATGACCGTCGCATTCAACGACGTTGTGGTCCTTCGTGATCTGCTGAGTCCGGAGAAGGTCCCTTCC CTCGCTAATCATGAGCGCGTCCTGCAACAGCTGTCCTCCTTCCGTTGGCAACGGAAGAAAACATGTTCAGTCATC AACATTTTGGCGCAGGCTCTCTATGCCTTGTTTGCTGCTAAAGACGAGAATATGCGTGCTCTCCAACGGGGCTGC TTCCGTTACTTTGAGTTAGGAATGACCAGCGGGCCCATAGGCCTTCTGGGTGGACTGATCAAAAAGCCGGACGTT CTATTCTGGCATTTCTTCAGTGTCGCCTTTCTCTCTCTGTGGCTCGTCATCACCGAGCCACCTTTCTACAAGCTG CCTCTGGCTTTGTTGAAATGCATTATGGTCTTTTGGACAGCATGCGTCGTGATCTTCCCCTACATGCTGATAGAG GCATTCTGCTAA |
| Gene | >Ani_SJS72_1|g764.t1 ATGGCCGCCGCTGTCGCCAACGGCCATACCACTTCCTCCGCCGATGTCGCCAAACAGCGCAGGCTGATCCACCAC CATGCCGATGTCGTGATTGTAGGCGCCGGGATCCTAGGTTGTGCATTGGCGGTCGCACTTGGAAGACAAGGGCGC AGCGTCCTGCTGCTGGAGGCGTCCATGAAGGAGCCTGACCGGATCGTGGGAGAGTTACTACAGCCTGGCGGTGTC GAGGCGCTTGAGAAACTGGGTCTTGCTGATTGTCTCGAAGACATTGATGCCATCCCAGCGAAAGGCTACCATGTG ACATACTTTGGGAAACCCGTCTCGTTCACCTACCCCAAAGCCTCCCCGTCGTCGCCCGCCCCGCAAGGGTGTTGT TTCCACCATGGCCGCTTCGTCATGAAGCTGCGAGCTGCTGCGCTGGCCTGCCCCAATGTCACAGTGGTGGAGACC AAGGCCACCGACTTGGTCACTTGCTCCCACACCAAGCAGGTTCTTGGTGTCGAGTGTGTGACCGGCGACATGAAG GATTGCTACTTTGGCCATCTTACGGTGGTGGCCGATGGCTACGCCTCCAAACTCCGCAAGCAATACCATTCCAAT ACTCCCAAGGTCCGCTCCAGGTTCTGGGGCTTGGAATTGATCGATGCAGACCTTCCCAAGCCTTATCATGGCCAC GTCCTCCTTAGCGACAATGCCCCTATCCTCGTCTACCAAATTGGCACCCATGAAACCCGCATCCTCATCGACATC CCAGAGAACCTCCCGTCGGCCTCCGTCAAGAACGGCGGCGTCAAGAACCACCTTCGCAACGTCGTTCTCCCGTCC CTTCCCGAATGCATTCAGCCTTCATTCGTGGCTGCGTTGGACAAAGGTCAGCTGCGGTCAATGCCGAACTCATAT CTGCCTAGTACCCCGAACAAGACTCCCGGTCTGGTCATCCTGGGCGATGCGCTCAACATGCGGCATCCGCTGACC GGTGGAGGAATGACCGTCGCATTCAACGACGTTGTGGTCCTTCGTGATCTGCTGAGTCCGGAGAAGGTCCCTTCC CTCGCTAATCATGAGCGCGTCCTGCAACAGCTGTCCTCCTTCCGTTGGCAACGGAAGAAAACATGTTCAGTCATC AACATTTTGGCGCAGGCTCTCTATGCCTTGTTTGCTGCTAAAGGTTCGTTTTACATTGTTTCCCATCCGTCACAC CCAGCGTCCCAGCAGCTAACGCCAGACCCCACTGGGGCAAATCTAGACGAGAATATGCGTGCTCTCCAACGGGGC TGCTTCCGTTACTTTGAGTTAGGAATGACCAGCGGGCCCATAGGCCTTCTGGGTGGACTGATCAAAAAGCCGGAC GTTCTATTCTGGCATTTCTTCAGTGTCGCCTTTCTCTCTCTGTGGCTCGTCATCACCGAGCCACCTTTCTACAAG CTGCCTCTGGCTTTGTTGAAATGCATTATGGTCTTTTGGACAGCATGCGTCGTGATCTTCCCCTACATGCTGATA GAGGCATTCTGCTAA |