© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS72_1|g7587.t1 |
| Gene name | |
| Location | scaffold_063:9163..10267 |
| Strand | - |
| Gene length (bp) | 1104 |
| Transcript length (bp) | 867 |
| Coding sequence length (bp) | 867 |
| Protein length (aa) | 289 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04193 | PQ-loop | PQ loop repeat | 1.3E-18 | 12 | 70 |
| PF04193 | PQ-loop | PQ loop repeat | 1.5E-17 | 167 | 224 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 50 | 72 | 22 |
| 3 | 95 | 117 | 22 |
| 4 | 129 | 151 | 22 |
| 5 | 161 | 183 | 22 |
| 6 | 196 | 218 | 22 |
| 7 | 238 | 257 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g7587.t1 MATQLEIFVRALSRLLGWIYTFCWSASFYPQPINNFRRRSTTGLAIDFPTINVLGFVCYTIYTSAFLYSPVIRHQ YAARHPLAEDPTVRFNDFAFALHAVVLSFITYTQFWPFIWGFKVSRHQKVSKPVAGLFWGSIVGVTIVIFIVLGQ SPNNGYDPYSWAWIDVIYALSYVKLVITIVKYVPQAWVNYKRKSTYGWSIGQILFDLSGGVLSLAQLLLDSSFQD DWSGVTGNPIKFLLSNVTIFFDLIFVVQHYILYRDAEDDSGKDRNPSDRTPLLSVSDGQPGRS* |
| Coding | >Ani_SJS72_1|g7587.t1 ATGGCAACTCAGCTAGAGATTTTCGTGAGGGCGCTTTCTCGCCTACTCGGCTGGATATACACGTTCTGTTGGTCT GCGTCCTTCTATCCCCAGCCGATCAACAACTTCCGGCGACGGTCGACAACGGGGCTGGCAATCGACTTTCCTACC ATCAACGTGCTGGGCTTCGTGTGCTATACCATATATACTTCCGCTTTCCTTTACTCTCCCGTGATCCGTCATCAA TATGCTGCTCGTCACCCACTTGCTGAGGACCCGACCGTGCGCTTCAACGACTTTGCCTTCGCCCTACATGCTGTC GTCCTTAGCTTCATCACGTATACACAGTTCTGGCCATTCATCTGGGGGTTCAAGGTCTCTCGCCATCAGAAAGTT AGCAAGCCGGTAGCAGGCCTTTTCTGGGGCTCTATAGTCGGCGTCACGATCGTGATCTTCATCGTTCTCGGTCAG AGCCCAAATAACGGCTATGACCCATACTCCTGGGCGTGGATCGATGTTATATATGCCCTTTCTTACGTGAAACTG GTCATCACCATCGTGAAGTACGTACCTCAAGCGTGGGTTAACTATAAGCGTAAATCCACATACGGCTGGAGTATC GGACAGATCTTATTTGATTTGTCTGGGGGTGTCTTATCCCTTGCCCAGTTGCTGCTGGATTCTAGCTTCCAAGAT GACTGGAGTGGAGTCACAGGAAATCCCATCAAGTTCCTTTTGTCGAACGTTACCATCTTTTTCGATCTGATCTTT GTGGTACAGCACTATATCCTCTACAGAGATGCAGAGGACGATAGCGGTAAGGACCGGAACCCGAGTGATCGGACT CCTTTGTTGTCCGTGTCCGACGGACAGCCCGGGCGCAGTTAG |
| Transcript | >Ani_SJS72_1|g7587.t1 ATGGCAACTCAGCTAGAGATTTTCGTGAGGGCGCTTTCTCGCCTACTCGGCTGGATATACACGTTCTGTTGGTCT GCGTCCTTCTATCCCCAGCCGATCAACAACTTCCGGCGACGGTCGACAACGGGGCTGGCAATCGACTTTCCTACC ATCAACGTGCTGGGCTTCGTGTGCTATACCATATATACTTCCGCTTTCCTTTACTCTCCCGTGATCCGTCATCAA TATGCTGCTCGTCACCCACTTGCTGAGGACCCGACCGTGCGCTTCAACGACTTTGCCTTCGCCCTACATGCTGTC GTCCTTAGCTTCATCACGTATACACAGTTCTGGCCATTCATCTGGGGGTTCAAGGTCTCTCGCCATCAGAAAGTT AGCAAGCCGGTAGCAGGCCTTTTCTGGGGCTCTATAGTCGGCGTCACGATCGTGATCTTCATCGTTCTCGGTCAG AGCCCAAATAACGGCTATGACCCATACTCCTGGGCGTGGATCGATGTTATATATGCCCTTTCTTACGTGAAACTG GTCATCACCATCGTGAAGTACGTACCTCAAGCGTGGGTTAACTATAAGCGTAAATCCACATACGGCTGGAGTATC GGACAGATCTTATTTGATTTGTCTGGGGGTGTCTTATCCCTTGCCCAGTTGCTGCTGGATTCTAGCTTCCAAGAT GACTGGAGTGGAGTCACAGGAAATCCCATCAAGTTCCTTTTGTCGAACGTTACCATCTTTTTCGATCTGATCTTT GTGGTACAGCACTATATCCTCTACAGAGATGCAGAGGACGATAGCGGTAAGGACCGGAACCCGAGTGATCGGACT CCTTTGTTGTCCGTGTCCGACGGACAGCCCGGGCGCAGTTAG |
| Gene | >Ani_SJS72_1|g7587.t1 ATGGCAACTCAGCTAGAGATTTTCGTGAGGGCGCTTTCTCGGTATGTTTTTTTTCCCTCTGAATCTCTCGCCTTA TCTCTTTTGTACAATGTACTAACACACCATGGCAATGCAGCCTACTCGGCTGGATATAGTACGTCTTTAAGCCCG AAGTTCTCAGGGAAGATACTATCACGACAGGCGTGAGACTTCAGGAGATTATACATACTGATTACCTCTCTTCAG CACGTTCTGTTGGTCTGCGTCCTTCTATCCCCAGCCGATCAACAACTTCCGGCGACGGTCGACAACGGGGCTGGC AATCGACTTTCCTACCATCAACGTGCTGGGCTTCGTGTGCTATACCATATATACTTCCGCTTTCCTTTACTCTCC CGTGATCCGTCATCAATATGCTGCTCGTCACCCACTTGCTGAGGACCCGACCGTGCGCTTCAACGACTTTGCCTT CGCCCTACATGCTGTCGTCCTTAGCTTCATCACGTATACACAGTTCTGGCCATTCATCTGGGGGTTCAAGGTCTC TCGCCATCAGAAAGTTAGCAAGCCGGTAGCAGGCCTTTTCTGGGGCTCTATAGTCGGCGTCACGATCGTGATCTT CATCGTTCTCGGTCAGAGCCCAAATAACGGCTATGACCCATACTCCTGGGCGTGGATCGATGTTGTAAGTAGCCC AAGGATTTGGAAATGGCTATCCCGCATGTGCTCTAACCCCTAACTCCTGGGTCAATCTAGATATATGCCCTTTCT TACGTGAAACTGGTCATCACCATCGTGAAGTACGTACCTCAAGCGTGGGTTAACTATAAGCGTAAATCCACATAC GGCTGGAGTATCGGACAGATCTTATTTGATTTGTCTGGGGGTGTCTTATCCCTTGCCCAGTTGCTGCTGGATTCT AGCTTCCAAGATGACTGGAGTGGAGTCACAGGAAATCCCATCAAGTTCCTTTTGTCGAACGTTACCATCTTTTTC GATCTGATCTTTGTGGTACAGCACTATATCCTCTACAGAGATGCAGAGGACGATAGCGGTAAGGACCGGAACCCG AGTGATCGGACTCCTTTGTTGTCCGTGTCCGACGGACAGCCCGGGCGCAGTTAG |