© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g7359.t1 |
| Gene name | |
| Location | scaffold_059:166715..168096 |
| Strand | + |
| Gene length (bp) | 1381 |
| Transcript length (bp) | 1275 |
| Coding sequence length (bp) | 1275 |
| Protein length (aa) | 425 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 8.5E-11 | 29 | 67 |
| PF02037 | SAP | SAP domain | 3.0E-07 | 234 | 267 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 1.8E-07 | 30 | 67 |
| PF13920 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | 3.3E-07 | 28 | 70 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 1.2E-06 | 30 | 65 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| Orthofinder run ID | 3 |
| Orthogroup | 7386 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g7359.t1 MDQTFDLPDSTDWLTTPLSLVAPLESALRCQVCKDFFDNPVITSCSHTFCSLCIRRCLSTEGKCPACRSSDQELK LRRNWAVQELVEAFQNARPNVLDLARKAAARGSDTEEGESEEPAPKKRKVEAVDGPAAEGVRTRSQTRGIGSQED PVAIEVIEDSNDDEYVPDDGLVACPICNRRMKNEAVFRHLDTCTGEPAPPKQMNFGSLQPMPQPSQRAKDALNKT PERLPIINYSLLKDNVLRKKLKDLGIPNTGPRPLLQRRHTEWMNLWNANCDSKTPKSKRELLRELDIWERTQGGQ AQLSGDVTDTVMRKDFDAAAWSTSHDDDFKRLIANARKKSEAQVRTTIPQEPVGTNQATDQLASPTTYQPSSVPV VEHTEAMHATEDAHPPEKLTVDDKTVIVPEVQAQTLQGSVDSQMTNAQN* |
| Coding | >Ani_SJS72_1|g7359.t1 ATGGACCAGACCTTCGACCTCCCCGACTCGACCGATTGGCTTACAACGCCACTGTCACTCGTCGCGCCTCTCGAA TCCGCCCTCCGTTGCCAGGTCTGTAAGGACTTCTTCGATAACCCGGTGATTACTTCGTGCAGCCATACATTCTGC TCACTTTGCATTCGGCGGTGTCTAAGCACAGAAGGCAAATGCCCCGCGTGCCGCAGCTCGGATCAGGAATTGAAG TTGCGGCGCAACTGGGCTGTTCAGGAACTGGTTGAGGCGTTCCAGAATGCTAGACCCAATGTTTTAGATCTGGCG AGGAAGGCTGCTGCGCGGGGGAGTGATACTGAGGAGGGAGAGTCGGAGGAACCCGCACCGAAGAAGCGAAAGGTC GAGGCTGTAGATGGGCCTGCTGCGGAGGGCGTCAGGACTCGATCGCAAACTCGGGGAATTGGCTCTCAGGAAGAT CCTGTTGCGATTGAGGTGATTGAGGATAGTAATGATGATGAATATGTTCCAGACGACGGACTGGTCGCGTGCCCA ATCTGCAACCGGAGGATGAAGAATGAAGCGGTGTTTCGACACTTGGATACATGCACTGGAGAGCCCGCGCCGCCC AAACAAATGAATTTTGGATCGTTACAACCCATGCCACAACCGTCGCAGAGAGCAAAAGACGCCCTGAATAAAACA CCAGAACGACTGCCCATTATAAACTATTCTCTATTGAAAGATAATGTGCTCCGAAAGAAGTTAAAAGATTTGGGT ATACCGAACACGGGCCCGAGGCCCCTTCTGCAACGACGTCACACAGAGTGGATGAATTTGTGGAATGCCAACTGC GACTCCAAAACGCCAAAGTCCAAAAGGGAATTGCTGAGAGAACTGGATATCTGGGAACGCACGCAAGGCGGCCAA GCGCAACTATCAGGGGACGTCACAGATACTGTCATGCGCAAAGACTTTGATGCGGCGGCGTGGTCAACGAGTCAT GACGATGACTTCAAGCGGCTCATTGCCAATGCGCGAAAAAAGAGCGAAGCGCAGGTGCGCACCACGATACCACAA GAACCTGTAGGCACAAATCAGGCAACCGACCAGCTTGCCAGTCCGACAACGTATCAGCCTTCGAGTGTGCCTGTT GTTGAGCATACCGAAGCCATGCATGCGACGGAAGATGCCCACCCTCCGGAGAAGTTGACTGTAGATGACAAAACC GTTATTGTCCCTGAGGTCCAAGCGCAGACACTACAGGGCTCAGTTGATAGCCAGATGACCAATGCGCAAAATTAA |
| Transcript | >Ani_SJS72_1|g7359.t1 ATGGACCAGACCTTCGACCTCCCCGACTCGACCGATTGGCTTACAACGCCACTGTCACTCGTCGCGCCTCTCGAA TCCGCCCTCCGTTGCCAGGTCTGTAAGGACTTCTTCGATAACCCGGTGATTACTTCGTGCAGCCATACATTCTGC TCACTTTGCATTCGGCGGTGTCTAAGCACAGAAGGCAAATGCCCCGCGTGCCGCAGCTCGGATCAGGAATTGAAG TTGCGGCGCAACTGGGCTGTTCAGGAACTGGTTGAGGCGTTCCAGAATGCTAGACCCAATGTTTTAGATCTGGCG AGGAAGGCTGCTGCGCGGGGGAGTGATACTGAGGAGGGAGAGTCGGAGGAACCCGCACCGAAGAAGCGAAAGGTC GAGGCTGTAGATGGGCCTGCTGCGGAGGGCGTCAGGACTCGATCGCAAACTCGGGGAATTGGCTCTCAGGAAGAT CCTGTTGCGATTGAGGTGATTGAGGATAGTAATGATGATGAATATGTTCCAGACGACGGACTGGTCGCGTGCCCA ATCTGCAACCGGAGGATGAAGAATGAAGCGGTGTTTCGACACTTGGATACATGCACTGGAGAGCCCGCGCCGCCC AAACAAATGAATTTTGGATCGTTACAACCCATGCCACAACCGTCGCAGAGAGCAAAAGACGCCCTGAATAAAACA CCAGAACGACTGCCCATTATAAACTATTCTCTATTGAAAGATAATGTGCTCCGAAAGAAGTTAAAAGATTTGGGT ATACCGAACACGGGCCCGAGGCCCCTTCTGCAACGACGTCACACAGAGTGGATGAATTTGTGGAATGCCAACTGC GACTCCAAAACGCCAAAGTCCAAAAGGGAATTGCTGAGAGAACTGGATATCTGGGAACGCACGCAAGGCGGCCAA GCGCAACTATCAGGGGACGTCACAGATACTGTCATGCGCAAAGACTTTGATGCGGCGGCGTGGTCAACGAGTCAT GACGATGACTTCAAGCGGCTCATTGCCAATGCGCGAAAAAAGAGCGAAGCGCAGGTGCGCACCACGATACCACAA GAACCTGTAGGCACAAATCAGGCAACCGACCAGCTTGCCAGTCCGACAACGTATCAGCCTTCGAGTGTGCCTGTT GTTGAGCATACCGAAGCCATGCATGCGACGGAAGATGCCCACCCTCCGGAGAAGTTGACTGTAGATGACAAAACC GTTATTGTCCCTGAGGTCCAAGCGCAGACACTACAGGGCTCAGTTGATAGCCAGATGACCAATGCGCAAAATTAA |
| Gene | >Ani_SJS72_1|g7359.t1 ATGGACCAGACCTTCGACCTCCCCGACTCGACCGATTGGCTTACAACGCCACTGTCACTCGTCGCGCCTCTCGAA TCCGCCCTCCGTTGCCAGGTCTGTAAGGACTTCTTCGATAACCCGGTGATTACTTCGTGCAGCCATACATTCTGC TCACTTTGCATTCGGCGGTGTCTAAGCACAGAAGGCAAATGCCCCGCGTGCCGCAGCTCGGATCAGGAATTGAAG TTGCGGCGCAACTGGGCTGTTCAGGAACTGGTTGAGGCGTTCCAGAATGCTAGACCCAATGTTTTAGATCTGGCG AGGAAGGCTGCTGCGCGGGGGAGTGATACTGAGGAGGGAGAGTCGGAGGAACCCGCACCGAAGAAGCGAAAGGTC GAGGCTGTAGATGGGCCTGCTGCGGAGGGCGTCAGGACTCGATCGCAAACTCGGGGAATTGGCTCTCAGGAAGAT CCTGTTGCGATTGAGGTGATTGAGGATAGTAATGATGATGAATATGTTCCAGGTGTGTATGCTCATCGGCAAAGT TGCGCCGCATGCTAATCGCCACTGAAGACGACGGACTGGTCGCGTGCCCAATCTGCAACCGGAGGATGAAGAATG AAGCGGTGTTTCGACACTTGGATACATGCACTGGAGAGCCCGCGCCGCCCAAACAAATGAATTTTGGGTAAGATA TGTCTTTTGGAGCGTGTCTACATGTGTGCTTCTAACTCGGAATTATAGATCGTTACAACCCATGCCACAACCGTC GCAGAGAGCAAAAGACGCCCTGAATAAAACACCAGAACGACTGCCCATTATAAACTATTCTCTATTGAAAGATAA TGTGCTCCGAAAGAAGTTAAAAGATTTGGGTATACCGAACACGGGCCCGAGGCCCCTTCTGCAACGACGTCACAC AGAGTGGATGAATTTGTGGAATGCCAACTGCGACTCCAAAACGCCAAAGTCCAAAAGGGAATTGCTGAGAGAACT GGATATCTGGGAACGCACGCAAGGCGGCCAAGCGCAACTATCAGGGGACGTCACAGATACTGTCATGCGCAAAGA CTTTGATGCGGCGGCGTGGTCAACGAGTCATGACGATGACTTCAAGCGGCTCATTGCCAATGCGCGAAAAAAGAG CGAAGCGCAGGTGCGCACCACGATACCACAAGAACCTGTAGGCACAAATCAGGCAACCGACCAGCTTGCCAGTCC GACAACGTATCAGCCTTCGAGTGTGCCTGTTGTTGAGCATACCGAAGCCATGCATGCGACGGAAGATGCCCACCC TCCGGAGAAGTTGACTGTAGATGACAAAACCGTTATTGTCCCTGAGGTCCAAGCGCAGACACTACAGGGCTCAGT TGATAGCCAGATGACCAATGCGCAAAATTAA |