© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g7301.t1 |
| Gene name | |
| Location | scaffold_058:209373..210606 |
| Strand | - |
| Gene length (bp) | 1233 |
| Transcript length (bp) | 1113 |
| Coding sequence length (bp) | 1113 |
| Protein length (aa) | 371 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00742 | Homoserine_dh | Homoserine dehydrogenase | 8.6E-54 | 154 | 363 |
| PF03447 | NAD_binding_3 | Homoserine dehydrogenase, NAD binding domain | 9.0E-14 | 11 | 146 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050661 | NADP binding | Yes |
| GO:0006520 | cellular amino acid metabolic process | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0008152 | metabolic process | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0000166 | nucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0009987 | cellular process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0036094 | small molecule binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 24 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g7301.t1 MSAPVFLGIIGVGGVGTAFLHQLARLPNAPKLILLARSTQTLLSPTPSYSPSIPAAEWKTASATPSLTKSGALSA EEIANYLSSAPGRSILVDNTSDPALAASYPIFLRKGISIVTPNKKGFSSDLSLWKDIFASAAQGNALVYHESTVG AGLPVISTLRDLVATGDEVTRIEGVFSGTLSFLFNTFAPVGGAGAGRKWSEVVAEAKELGYTEPDPRDDLNGMDV ARKLTILARIAGLEVQAPDAFPVESLIPEELRGLDGSAEGAKTFMERLAEFDGQMTEIKESAEKEGKVVRYVGSV DVGKKEVRVGLQRFDKDSAIAGLKGSDNIISFYTKRYGSNPLIVQGAGAGGDVTAMGVSADLIKVVQRLQ* |
| Coding | >Ani_SJS72_1|g7301.t1 ATGTCTGCCCCTGTCTTCCTCGGTATCATTGGCGTCGGCGGCGTCGGCACTGCCTTCCTGCACCAGCTCGCCCGC CTCCCCAACGCCCCCAAGCTCATCCTTCTCGCCCGCTCCACCCAAACCCTCCTCTCCCCGACCCCCTCCTACAGC CCCAGCATCCCCGCCGCGGAATGGAAGACCGCCAGCGCAACCCCCTCCCTGACCAAGTCCGGCGCCCTCTCCGCT GAAGAAATCGCTAACTACCTCTCCTCCGCGCCCGGCCGCTCCATCCTCGTCGACAACACCAGCGACCCCGCCCTC GCCGCCTCCTACCCCATCTTCCTGCGCAAGGGCATCTCCATCGTCACCCCCAACAAGAAGGGTTTCTCCTCCGAC CTGTCCCTCTGGAAGGACATCTTCGCTTCCGCCGCCCAGGGCAACGCCCTTGTCTACCATGAAAGTACCGTCGGT GCTGGCCTGCCTGTTATCTCTACGCTGCGGGATCTGGTTGCCACCGGTGACGAGGTGACGCGCATCGAGGGAGTG TTTTCGGGTACGCTTTCTTTCTTGTTCAACACTTTTGCGCCGGTTGGTGGAGCTGGTGCTGGACGGAAGTGGAGT GAGGTTGTGGCTGAGGCGAAGGAGTTGGGTTACACTGAGCCTGATCCGAGAGATGATCTGAATGGTATGGATGTT GCGAGAAAGTTGACTATCCTGGCACGTATTGCTGGGTTGGAGGTCCAGGCTCCTGATGCGTTCCCCGTTGAGTCG TTGATCCCCGAGGAGTTGAGGGGATTGGATGGCTCTGCGGAGGGTGCTAAGACTTTCATGGAGAGGTTGGCCGAG TTTGACGGTCAGATGACGGAGATTAAGGAGAGTGCCGAGAAGGAGGGTAAGGTTGTTCGGTACGTGGGTAGTGTG GATGTTGGCAAGAAGGAGGTGCGTGTTGGATTGCAGCGCTTCGACAAGGATAGTGCCATTGCTGGCCTGAAGGGC AGTGACAACATCATTAGCTTCTATACTAAGCGGTACGGAAGCAACCCGCTCATTGTGCAGGGTGCTGGTGCTGGT GGTGATGTTACTGCTATGGGTGTGTCGGCCGATTTGATCAAGGTCGTGCAGAGACTGCAGTAG |
| Transcript | >Ani_SJS72_1|g7301.t1 ATGTCTGCCCCTGTCTTCCTCGGTATCATTGGCGTCGGCGGCGTCGGCACTGCCTTCCTGCACCAGCTCGCCCGC CTCCCCAACGCCCCCAAGCTCATCCTTCTCGCCCGCTCCACCCAAACCCTCCTCTCCCCGACCCCCTCCTACAGC CCCAGCATCCCCGCCGCGGAATGGAAGACCGCCAGCGCAACCCCCTCCCTGACCAAGTCCGGCGCCCTCTCCGCT GAAGAAATCGCTAACTACCTCTCCTCCGCGCCCGGCCGCTCCATCCTCGTCGACAACACCAGCGACCCCGCCCTC GCCGCCTCCTACCCCATCTTCCTGCGCAAGGGCATCTCCATCGTCACCCCCAACAAGAAGGGTTTCTCCTCCGAC CTGTCCCTCTGGAAGGACATCTTCGCTTCCGCCGCCCAGGGCAACGCCCTTGTCTACCATGAAAGTACCGTCGGT GCTGGCCTGCCTGTTATCTCTACGCTGCGGGATCTGGTTGCCACCGGTGACGAGGTGACGCGCATCGAGGGAGTG TTTTCGGGTACGCTTTCTTTCTTGTTCAACACTTTTGCGCCGGTTGGTGGAGCTGGTGCTGGACGGAAGTGGAGT GAGGTTGTGGCTGAGGCGAAGGAGTTGGGTTACACTGAGCCTGATCCGAGAGATGATCTGAATGGTATGGATGTT GCGAGAAAGTTGACTATCCTGGCACGTATTGCTGGGTTGGAGGTCCAGGCTCCTGATGCGTTCCCCGTTGAGTCG TTGATCCCCGAGGAGTTGAGGGGATTGGATGGCTCTGCGGAGGGTGCTAAGACTTTCATGGAGAGGTTGGCCGAG TTTGACGGTCAGATGACGGAGATTAAGGAGAGTGCCGAGAAGGAGGGTAAGGTTGTTCGGTACGTGGGTAGTGTG GATGTTGGCAAGAAGGAGGTGCGTGTTGGATTGCAGCGCTTCGACAAGGATAGTGCCATTGCTGGCCTGAAGGGC AGTGACAACATCATTAGCTTCTATACTAAGCGGTACGGAAGCAACCCGCTCATTGTGCAGGGTGCTGGTGCTGGT GGTGATGTTACTGCTATGGGTGTGTCGGCCGATTTGATCAAGGTCGTGCAGAGACTGCAGTAG |
| Gene | >Ani_SJS72_1|g7301.t1 ATGTCTGCCCCTGTCTTCCTCGGTATCATTGGTAAGTTCCGCAAATTCCCCAGACAGCGCTGCAGTAGCACCCAG CCCAGCATTGCGAGAATCATCACCACCACCATAACTACAACTGCAAATATTCAATCAAACTAACAACCAACACCA GGCGTCGGCGGCGTCGGCACTGCCTTCCTGCACCAGCTCGCCCGCCTCCCCAACGCCCCCAAGCTCATCCTTCTC GCCCGCTCCACCCAAACCCTCCTCTCCCCGACCCCCTCCTACAGCCCCAGCATCCCCGCCGCGGAATGGAAGACC GCCAGCGCAACCCCCTCCCTGACCAAGTCCGGCGCCCTCTCCGCTGAAGAAATCGCTAACTACCTCTCCTCCGCG CCCGGCCGCTCCATCCTCGTCGACAACACCAGCGACCCCGCCCTCGCCGCCTCCTACCCCATCTTCCTGCGCAAG GGCATCTCCATCGTCACCCCCAACAAGAAGGGTTTCTCCTCCGACCTGTCCCTCTGGAAGGACATCTTCGCTTCC GCCGCCCAGGGCAACGCCCTTGTCTACCATGAAAGTACCGTCGGTGCTGGCCTGCCTGTTATCTCTACGCTGCGG GATCTGGTTGCCACCGGTGACGAGGTGACGCGCATCGAGGGAGTGTTTTCGGGTACGCTTTCTTTCTTGTTCAAC ACTTTTGCGCCGGTTGGTGGAGCTGGTGCTGGACGGAAGTGGAGTGAGGTTGTGGCTGAGGCGAAGGAGTTGGGT TACACTGAGCCTGATCCGAGAGATGATCTGAATGGTATGGATGTTGCGAGAAAGTTGACTATCCTGGCACGTATT GCTGGGTTGGAGGTCCAGGCTCCTGATGCGTTCCCCGTTGAGTCGTTGATCCCCGAGGAGTTGAGGGGATTGGAT GGCTCTGCGGAGGGTGCTAAGACTTTCATGGAGAGGTTGGCCGAGTTTGACGGTCAGATGACGGAGATTAAGGAG AGTGCCGAGAAGGAGGGTAAGGTTGTTCGGTACGTGGGTAGTGTGGATGTTGGCAAGAAGGAGGTGCGTGTTGGA TTGCAGCGCTTCGACAAGGATAGTGCCATTGCTGGCCTGAAGGGCAGTGACAACATCATTAGCTTCTATACTAAG CGGTACGGAAGCAACCCGCTCATTGTGCAGGGTGCTGGTGCTGGTGGTGATGTTACTGCTATGGGTGTGTCGGCC GATTTGATCAAGGTCGTGCAGAGACTGCAGTAG |