Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS72_1|g7238.t1
Gene name
Locationscaffold_058:31576..32168
Strand-
Gene length (bp)592
Transcript length (bp)420
Coding sequence length (bp)420
Protein length (aa) 140

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13639 zf-RING_2 Ring finger domain 8.1E-09 79 120
PF17123 zf-RING_11 RING-like zinc finger 4.6E-07 79 106
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 3.3E-05 79 120

GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0003674 molecular_function No
GO:0043169 cation binding No
GO:0043167 ion binding No
GO:0005488 binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 28 0.5

Transmembrane Domains

Domain # Start End Length
1 4 26 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS72_1|g7238.t1
MAIVLGIGLGVATLIIMCLLLTLFVNRRDRHPVLKSKGSSNDKLRKLDAVSPTRTLEDWWSRAKGPLLPSEGVDG
DFICVVCLESVLRCQEIRELKCLHVFHRECLEKWYLQDHFNCPLCHRAYYVQETHPSNEFVWMV*
Coding >Ani_SJS72_1|g7238.t1
ATGGCCATTGTCTTGGGAATCGGACTAGGAGTCGCGACCTTAATCATCATGTGTTTGCTTTTGACCCTTTTCGTC
AATCGGCGTGATCGCCATCCGGTTCTCAAAAGCAAAGGCAGCTCAAACGACAAACTACGCAAGCTGGATGCTGTC
TCCCCCACTCGGACATTAGAAGACTGGTGGTCGCGAGCTAAAGGGCCGCTTTTACCGTCCGAAGGTGTTGATGGC
GACTTCATATGCGTTGTTTGCCTCGAGTCGGTTCTGCGCTGCCAGGAAATCCGGGAACTCAAATGTCTGCACGTG
TTCCATCGAGAGTGTCTGGAAAAGTGGTATCTGCAAGACCATTTTAATTGTCCACTCTGCCATAGAGCATATTAC
GTCCAAGAGACCCATCCAAGTAATGAGTTTGTGTGGATGGTGTGA
Transcript >Ani_SJS72_1|g7238.t1
ATGGCCATTGTCTTGGGAATCGGACTAGGAGTCGCGACCTTAATCATCATGTGTTTGCTTTTGACCCTTTTCGTC
AATCGGCGTGATCGCCATCCGGTTCTCAAAAGCAAAGGCAGCTCAAACGACAAACTACGCAAGCTGGATGCTGTC
TCCCCCACTCGGACATTAGAAGACTGGTGGTCGCGAGCTAAAGGGCCGCTTTTACCGTCCGAAGGTGTTGATGGC
GACTTCATATGCGTTGTTTGCCTCGAGTCGGTTCTGCGCTGCCAGGAAATCCGGGAACTCAAATGTCTGCACGTG
TTCCATCGAGAGTGTCTGGAAAAGTGGTATCTGCAAGACCATTTTAATTGTCCACTCTGCCATAGAGCATATTAC
GTCCAAGAGACCCATCCAAGTAATGAGTTTGTGTGGATGGTGTGA
Gene >Ani_SJS72_1|g7238.t1
ATGGCCATTGTCTTGGGAATCGGACTAGGAGTCGCGACCTTAATCATCATGTGTTTGCTGTGAGTATTTAGCCAG
CCCCTAATCATCTTTGTGCCCGATGATGGTCATGATCGCATTCGCGCCACTAATACCCTAAATTCAATAGTTTGA
CCCTTTTCGTCAATCGGCGTGATCGCCATCCGGTTCTCAAAAGCAAAGGCAGCTCAAACGACAAACTACGCAAGC
TGGATGCTGTCTCCCCCACTCGGACATTAGAAGACTGGTGGTCGCGAGCTAAAGGGCCGCTTTTACCGTCCGAAG
GTGTTGATGGCGACTTCATATGGTACGTTTAACTTGCATCCGCCGACCAACGGCTGAATTAGCGGCAACGCTAGC
AAGTTGTTCGCCCACTAACTATGCCGTTGACAGCGTTGTTTGCCTCGAGTCGGTTCTGCGCTGCCAGGAAATCCG
GGAACTCAAATGTCTGCACGTGTTCCATCGAGAGTGTCTGGAAAAGTGGTATCTGCAAGACCATTTTAATTGTCC
ACTCTGCCATAGAGCATATTACGTCCAAGAGACCCATCCAAGTAATGAGTTTGTGTGGATGGTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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