© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g7114.t1 |
| Gene name | |
| Location | scaffold_056:139210..141607 |
| Strand | + |
| Gene length (bp) | 2397 |
| Transcript length (bp) | 2397 |
| Coding sequence length (bp) | 2397 |
| Protein length (aa) | 799 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07724 | AAA_2 | AAA domain (Cdc48 subfamily) | 1.8E-44 | 515 | 687 |
| PF17871 | AAA_lid_9 | AAA lid domain | 2.0E-34 | 259 | 361 |
| PF10431 | ClpB_D2-small | C-terminal, D2-small domain, of ClpB protein | 2.1E-27 | 694 | 774 |
| PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 7.3E-10 | 121 | 251 |
| PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 1.5E-05 | 521 | 638 |
| PF07728 | AAA_5 | AAA domain (dynein-related subfamily) | 1.2E-08 | 520 | 665 |
| PF00158 | Sigma54_activat | Sigma-54 interaction domain | 1.3E-04 | 518 | 620 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0016887 | ATP hydrolysis activity | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0008134 | transcription factor binding | Yes |
| GO:0032553 | ribonucleotide binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0050789 | regulation of biological process | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0043168 | anion binding | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0005488 | binding | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0000166 | nucleotide binding | No |
| GO:0065007 | biological regulation | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0008150 | biological_process | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0043167 | ion binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:0005515 | protein binding | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| Orthofinder run ID | 3 |
| Orthogroup | 1977 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g7114.t1 MSSRLQLARGRLLRPSSLPSSNRVLQPSQALRLLARTRIANLARHPSVLPIRTYANGRPHPPGGTHRMNLGGEPE KSALEQFGVDLTARAKAGKLDPVIGRDAEIHRTIQVLSRRTKNNPVLIGAAGTGKTAVLEGLAQRIVQGDVPESI KDKRVIALDLGSLIAGAKFRGDFEERLKSVLKEVEDAQGGVILFIDELHTLLGLGKAEGSIDASNLLKPALSRGE LQCCGATTLNEYRLIEKDVALARRFQPIQVGEPSVAATISILRGIKNKYEVHHGVRITDGALVAAATYSNRYITD RFLPDKAIDLVDEAASALRLQQESKPDVIRELDRDITTIQIELESLRKETDVSSRERRDKLQEDLKVKQEEARKL TEVWEKEKAEIEELKRAKEELERARFELEKAQREGNFAKAGELRYATIPSLEAKLPKEGEEQATKAQTSLIHDSV TADDIGNVVSRTTGIPVNKLMAGEVEKLIKMEDTLRKSVRGQDEALSAVANAVRMQRAGLSGENRPLASFMFLGP TGVGKTELCKKMAEFLFSTETAVVRFDMSEFQEKHTISRLIGSPAGYVGYDDAGQLTEAVRRKPYAVLLFDEFEK AHRDISALLLQVLDEGFLTDSQGHKVDFRNTLIVLTSNLGADILVGADPLHPYKEGGDNELSPETKKSVMDVVQS AYPPEFLNRIDEFIIFKRLSRDALRDIVDIRVKELQSRLDDRRMTLQVDDEIKDWLCDKGYDPKYGARPLNRLIA KEIGNKLADKIIRGEVTSGQTARVTFNADKSGLAVAAEAPVATETESS* |
| Coding | >Ani_SJS72_1|g7114.t1 ATGTCGTCAAGGTTACAACTCGCTCGGGGTCGGCTTCTCCGGCCATCCTCCCTACCGTCATCGAACCGCGTTCTT CAACCTTCTCAAGCATTGCGTCTACTTGCGCGCACCCGGATCGCGAATCTCGCCCGGCACCCGTCCGTCTTGCCT ATACGCACTTATGCCAATGGCCGCCCTCATCCTCCCGGAGGCACACATCGCATGAACCTTGGTGGTGAACCAGAA AAGTCAGCCTTGGAACAGTTCGGTGTCGACCTTACAGCCAGGGCTAAGGCAGGCAAGCTGGACCCGGTCATTGGA CGTGATGCCGAAATCCATCGCACCATTCAGGTTCTCTCCAGACGAACGAAAAACAACCCCGTTCTGATTGGAGCT GCGGGTACCGGAAAAACTGCGGTCTTGGAGGGTTTGGCACAGAGGATTGTTCAGGGAGACGTTCCAGAGAGCATC AAGGACAAACGTGTTATTGCGCTGGATCTGGGTTCTCTCATTGCTGGTGCTAAGTTCAGAGGTGATTTTGAAGAG CGGTTGAAATCTGTTCTTAAGGAGGTCGAGGATGCGCAAGGGGGTGTAATCCTCTTCATTGATGAGCTTCATACC TTACTTGGCTTGGGAAAGGCGGAAGGCAGTATCGACGCCAGCAACCTTCTGAAACCGGCTTTGTCTCGCGGTGAG CTGCAATGTTGCGGTGCCACGACTTTGAACGAGTACAGGTTGATTGAGAAGGACGTGGCTTTGGCTAGACGCTTC CAGCCTATCCAAGTCGGGGAGCCCTCGGTTGCTGCTACTATATCCATCTTGCGTGGTATCAAGAACAAGTATGAA GTGCACCATGGTGTCCGAATCACGGATGGTGCTTTGGTGGCGGCGGCAACTTACAGCAACCGGTACATCACGGAT CGGTTCCTTCCCGATAAGGCGATTGATCTGGTAGACGAGGCGGCGTCCGCCTTGCGACTACAGCAAGAATCGAAG CCCGATGTGATCAGAGAGCTCGACCGCGATATTACCACCATCCAAATTGAGCTCGAGTCGCTTCGCAAGGAGACT GACGTCAGTAGCCGCGAAAGAAGAGATAAACTTCAGGAAGACCTGAAAGTCAAACAAGAAGAAGCGAGGAAATTG ACTGAGGTATGGGAGAAGGAGAAAGCAGAAATCGAAGAACTCAAGCGTGCCAAAGAGGAGCTGGAGCGTGCTCGT TTCGAATTGGAGAAAGCTCAAAGAGAAGGAAATTTTGCAAAGGCTGGTGAACTGAGATATGCCACCATTCCGAGT CTCGAAGCCAAGCTGCCTAAAGAGGGCGAAGAGCAAGCCACAAAGGCCCAGACTAGTCTCATTCACGACTCCGTC ACCGCTGATGACATTGGAAACGTGGTCTCTCGGACTACTGGCATCCCTGTCAACAAGCTAATGGCCGGTGAGGTG GAGAAACTCATCAAAATGGAAGACACCCTACGCAAATCCGTTCGTGGACAGGACGAGGCTCTCTCCGCAGTTGCA AATGCAGTCCGCATGCAAAGAGCAGGCCTTAGCGGAGAGAATCGACCCCTCGCCTCGTTCATGTTCCTTGGTCCT ACGGGTGTTGGCAAGACAGAGCTCTGCAAGAAGATGGCTGAGTTCCTGTTCTCCACGGAGACAGCTGTTGTTCGG TTCGACATGAGCGAATTCCAAGAAAAGCACACTATCAGTCGTTTGATCGGCTCTCCAGCCGGCTATGTTGGATAC GATGACGCCGGTCAACTTACAGAGGCCGTGAGGAGGAAGCCCTACGCAGTTCTGCTATTCGATGAATTTGAGAAG GCGCATCGCGACATCTCTGCTTTACTGTTGCAAGTCCTTGATGAGGGGTTCCTCACAGATTCTCAGGGCCATAAG GTTGACTTTAGGAATACTCTGATTGTTCTAACATCGAATCTTGGCGCCGACATTCTTGTAGGTGCCGATCCTTTG CACCCCTACAAGGAAGGTGGCGATAACGAGCTTTCGCCTGAAACCAAAAAGTCGGTTATGGATGTTGTACAGTCG GCCTATCCGCCAGAGTTCCTCAACCGTATCGACGAGTTTATTATTTTCAAGAGGCTGTCCCGCGACGCTCTGAGG GATATTGTTGATATCAGAGTGAAGGAGCTGCAATCACGTCTCGACGACCGCCGAATGACTCTTCAAGTTGACGAC GAGATCAAAGACTGGCTTTGCGACAAGGGCTATGATCCTAAATACGGAGCTCGGCCCCTCAACCGCTTGATCGCC AAAGAAATCGGCAACAAGCTGGCTGATAAGATCATCCGCGGCGAAGTCACGTCTGGGCAAACCGCTCGTGTCACG TTCAATGCAGACAAGAGTGGACTTGCAGTAGCAGCAGAAGCCCCGGTGGCGACAGAAACTGAAAGCTCATAA |
| Transcript | >Ani_SJS72_1|g7114.t1 ATGTCGTCAAGGTTACAACTCGCTCGGGGTCGGCTTCTCCGGCCATCCTCCCTACCGTCATCGAACCGCGTTCTT CAACCTTCTCAAGCATTGCGTCTACTTGCGCGCACCCGGATCGCGAATCTCGCCCGGCACCCGTCCGTCTTGCCT ATACGCACTTATGCCAATGGCCGCCCTCATCCTCCCGGAGGCACACATCGCATGAACCTTGGTGGTGAACCAGAA AAGTCAGCCTTGGAACAGTTCGGTGTCGACCTTACAGCCAGGGCTAAGGCAGGCAAGCTGGACCCGGTCATTGGA CGTGATGCCGAAATCCATCGCACCATTCAGGTTCTCTCCAGACGAACGAAAAACAACCCCGTTCTGATTGGAGCT GCGGGTACCGGAAAAACTGCGGTCTTGGAGGGTTTGGCACAGAGGATTGTTCAGGGAGACGTTCCAGAGAGCATC AAGGACAAACGTGTTATTGCGCTGGATCTGGGTTCTCTCATTGCTGGTGCTAAGTTCAGAGGTGATTTTGAAGAG CGGTTGAAATCTGTTCTTAAGGAGGTCGAGGATGCGCAAGGGGGTGTAATCCTCTTCATTGATGAGCTTCATACC TTACTTGGCTTGGGAAAGGCGGAAGGCAGTATCGACGCCAGCAACCTTCTGAAACCGGCTTTGTCTCGCGGTGAG CTGCAATGTTGCGGTGCCACGACTTTGAACGAGTACAGGTTGATTGAGAAGGACGTGGCTTTGGCTAGACGCTTC CAGCCTATCCAAGTCGGGGAGCCCTCGGTTGCTGCTACTATATCCATCTTGCGTGGTATCAAGAACAAGTATGAA GTGCACCATGGTGTCCGAATCACGGATGGTGCTTTGGTGGCGGCGGCAACTTACAGCAACCGGTACATCACGGAT CGGTTCCTTCCCGATAAGGCGATTGATCTGGTAGACGAGGCGGCGTCCGCCTTGCGACTACAGCAAGAATCGAAG CCCGATGTGATCAGAGAGCTCGACCGCGATATTACCACCATCCAAATTGAGCTCGAGTCGCTTCGCAAGGAGACT GACGTCAGTAGCCGCGAAAGAAGAGATAAACTTCAGGAAGACCTGAAAGTCAAACAAGAAGAAGCGAGGAAATTG ACTGAGGTATGGGAGAAGGAGAAAGCAGAAATCGAAGAACTCAAGCGTGCCAAAGAGGAGCTGGAGCGTGCTCGT TTCGAATTGGAGAAAGCTCAAAGAGAAGGAAATTTTGCAAAGGCTGGTGAACTGAGATATGCCACCATTCCGAGT CTCGAAGCCAAGCTGCCTAAAGAGGGCGAAGAGCAAGCCACAAAGGCCCAGACTAGTCTCATTCACGACTCCGTC ACCGCTGATGACATTGGAAACGTGGTCTCTCGGACTACTGGCATCCCTGTCAACAAGCTAATGGCCGGTGAGGTG GAGAAACTCATCAAAATGGAAGACACCCTACGCAAATCCGTTCGTGGACAGGACGAGGCTCTCTCCGCAGTTGCA AATGCAGTCCGCATGCAAAGAGCAGGCCTTAGCGGAGAGAATCGACCCCTCGCCTCGTTCATGTTCCTTGGTCCT ACGGGTGTTGGCAAGACAGAGCTCTGCAAGAAGATGGCTGAGTTCCTGTTCTCCACGGAGACAGCTGTTGTTCGG TTCGACATGAGCGAATTCCAAGAAAAGCACACTATCAGTCGTTTGATCGGCTCTCCAGCCGGCTATGTTGGATAC GATGACGCCGGTCAACTTACAGAGGCCGTGAGGAGGAAGCCCTACGCAGTTCTGCTATTCGATGAATTTGAGAAG GCGCATCGCGACATCTCTGCTTTACTGTTGCAAGTCCTTGATGAGGGGTTCCTCACAGATTCTCAGGGCCATAAG GTTGACTTTAGGAATACTCTGATTGTTCTAACATCGAATCTTGGCGCCGACATTCTTGTAGGTGCCGATCCTTTG CACCCCTACAAGGAAGGTGGCGATAACGAGCTTTCGCCTGAAACCAAAAAGTCGGTTATGGATGTTGTACAGTCG GCCTATCCGCCAGAGTTCCTCAACCGTATCGACGAGTTTATTATTTTCAAGAGGCTGTCCCGCGACGCTCTGAGG GATATTGTTGATATCAGAGTGAAGGAGCTGCAATCACGTCTCGACGACCGCCGAATGACTCTTCAAGTTGACGAC GAGATCAAAGACTGGCTTTGCGACAAGGGCTATGATCCTAAATACGGAGCTCGGCCCCTCAACCGCTTGATCGCC AAAGAAATCGGCAACAAGCTGGCTGATAAGATCATCCGCGGCGAAGTCACGTCTGGGCAAACCGCTCGTGTCACG TTCAATGCAGACAAGAGTGGACTTGCAGTAGCAGCAGAAGCCCCGGTGGCGACAGAAACTGAAAGCTCATAA |
| Gene | >Ani_SJS72_1|g7114.t1 ATGTCGTCAAGGTTACAACTCGCTCGGGGTCGGCTTCTCCGGCCATCCTCCCTACCGTCATCGAACCGCGTTCTT CAACCTTCTCAAGCATTGCGTCTACTTGCGCGCACCCGGATCGCGAATCTCGCCCGGCACCCGTCCGTCTTGCCT ATACGCACTTATGCCAATGGCCGCCCTCATCCTCCCGGAGGCACACATCGCATGAACCTTGGTGGTGAACCAGAA AAGTCAGCCTTGGAACAGTTCGGTGTCGACCTTACAGCCAGGGCTAAGGCAGGCAAGCTGGACCCGGTCATTGGA CGTGATGCCGAAATCCATCGCACCATTCAGGTTCTCTCCAGACGAACGAAAAACAACCCCGTTCTGATTGGAGCT GCGGGTACCGGAAAAACTGCGGTCTTGGAGGGTTTGGCACAGAGGATTGTTCAGGGAGACGTTCCAGAGAGCATC AAGGACAAACGTGTTATTGCGCTGGATCTGGGTTCTCTCATTGCTGGTGCTAAGTTCAGAGGTGATTTTGAAGAG CGGTTGAAATCTGTTCTTAAGGAGGTCGAGGATGCGCAAGGGGGTGTAATCCTCTTCATTGATGAGCTTCATACC TTACTTGGCTTGGGAAAGGCGGAAGGCAGTATCGACGCCAGCAACCTTCTGAAACCGGCTTTGTCTCGCGGTGAG CTGCAATGTTGCGGTGCCACGACTTTGAACGAGTACAGGTTGATTGAGAAGGACGTGGCTTTGGCTAGACGCTTC CAGCCTATCCAAGTCGGGGAGCCCTCGGTTGCTGCTACTATATCCATCTTGCGTGGTATCAAGAACAAGTATGAA GTGCACCATGGTGTCCGAATCACGGATGGTGCTTTGGTGGCGGCGGCAACTTACAGCAACCGGTACATCACGGAT CGGTTCCTTCCCGATAAGGCGATTGATCTGGTAGACGAGGCGGCGTCCGCCTTGCGACTACAGCAAGAATCGAAG CCCGATGTGATCAGAGAGCTCGACCGCGATATTACCACCATCCAAATTGAGCTCGAGTCGCTTCGCAAGGAGACT GACGTCAGTAGCCGCGAAAGAAGAGATAAACTTCAGGAAGACCTGAAAGTCAAACAAGAAGAAGCGAGGAAATTG ACTGAGGTATGGGAGAAGGAGAAAGCAGAAATCGAAGAACTCAAGCGTGCCAAAGAGGAGCTGGAGCGTGCTCGT TTCGAATTGGAGAAAGCTCAAAGAGAAGGAAATTTTGCAAAGGCTGGTGAACTGAGATATGCCACCATTCCGAGT CTCGAAGCCAAGCTGCCTAAAGAGGGCGAAGAGCAAGCCACAAAGGCCCAGACTAGTCTCATTCACGACTCCGTC ACCGCTGATGACATTGGAAACGTGGTCTCTCGGACTACTGGCATCCCTGTCAACAAGCTAATGGCCGGTGAGGTG GAGAAACTCATCAAAATGGAAGACACCCTACGCAAATCCGTTCGTGGACAGGACGAGGCTCTCTCCGCAGTTGCA AATGCAGTCCGCATGCAAAGAGCAGGCCTTAGCGGAGAGAATCGACCCCTCGCCTCGTTCATGTTCCTTGGTCCT ACGGGTGTTGGCAAGACAGAGCTCTGCAAGAAGATGGCTGAGTTCCTGTTCTCCACGGAGACAGCTGTTGTTCGG TTCGACATGAGCGAATTCCAAGAAAAGCACACTATCAGTCGTTTGATCGGCTCTCCAGCCGGCTATGTTGGATAC GATGACGCCGGTCAACTTACAGAGGCCGTGAGGAGGAAGCCCTACGCAGTTCTGCTATTCGATGAATTTGAGAAG GCGCATCGCGACATCTCTGCTTTACTGTTGCAAGTCCTTGATGAGGGGTTCCTCACAGATTCTCAGGGCCATAAG GTTGACTTTAGGAATACTCTGATTGTTCTAACATCGAATCTTGGCGCCGACATTCTTGTAGGTGCCGATCCTTTG CACCCCTACAAGGAAGGTGGCGATAACGAGCTTTCGCCTGAAACCAAAAAGTCGGTTATGGATGTTGTACAGTCG GCCTATCCGCCAGAGTTCCTCAACCGTATCGACGAGTTTATTATTTTCAAGAGGCTGTCCCGCGACGCTCTGAGG GATATTGTTGATATCAGAGTGAAGGAGCTGCAATCACGTCTCGACGACCGCCGAATGACTCTTCAAGTTGACGAC GAGATCAAAGACTGGCTTTGCGACAAGGGCTATGATCCTAAATACGGAGCTCGGCCCCTCAACCGCTTGATCGCC AAAGAAATCGGCAACAAGCTGGCTGATAAGATCATCCGCGGCGAAGTCACGTCTGGGCAAACCGCTCGTGTCACG TTCAATGCAGACAAGAGTGGACTTGCAGTAGCAGCAGAAGCCCCGGTGGCGACAGAAACTGAAAGCTCATAA |