© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g6878.t1 |
| Gene name | |
| Location | scaffold_053:142803..145170 |
| Strand | - |
| Gene length (bp) | 2367 |
| Transcript length (bp) | 2211 |
| Coding sequence length (bp) | 2211 |
| Protein length (aa) | 737 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 1.2E-42 | 206 | 338 |
| PF00004 | AAA | ATPase family associated with various cellular activities (AAA) | 1.7E-43 | 513 | 642 |
| PF17862 | AAA_lid_3 | AAA+ lid domain | 1.6E-09 | 362 | 398 |
| PF17862 | AAA_lid_3 | AAA+ lid domain | 6.9E-10 | 667 | 699 |
| PF05496 | RuvB_N | Holliday junction DNA helicase RuvB P-loop domain | 2.7E-06 | 205 | 327 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005524 | ATP binding | Yes |
| GO:0009378 | four-way junction helicase activity | Yes |
| GO:0016887 | ATP hydrolysis activity | Yes |
| GO:0006310 | DNA recombination | Yes |
| GO:0006281 | DNA repair | Yes |
| GO:0008094 | ATP-dependent activity, acting on DNA | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0043168 | anion binding | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0140657 | ATP-dependent activity | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0000166 | nucleotide binding | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0003678 | DNA helicase activity | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0008150 | biological_process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0050896 | response to stimulus | No |
| GO:0036094 | small molecule binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0043167 | ion binding | No |
| GO:0044238 | primary metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:0033554 | cellular response to stress | No |
| GO:0006950 | response to stress | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:0140097 | catalytic activity, acting on DNA | No |
| GO:0003824 | catalytic activity | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0004386 | helicase activity | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009987 | cellular process | No |
| Orthofinder run ID | 3 |
| Orthogroup | 6341 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g6878.t1 MRRGGRPTLRQGLDKDIYQVVRKIIDDNAENAQFRLSVSSIYDTIKRSNSSLNRKPKRILEDSIERVVEVLKADV LGEDENDSIDGDFEGLEEPPAPESNSLNKSLVGMWNTTNTSKPSKQSESNTAESTAPPTTSTKKRHHGGESQSSK RRKAEAAVDRSPPTHVSLADLGGLDDVVQELGDLVILPMTRPQVYMSSNVQPPRGVLLHGPPGCGKTMIANAFAA ELGVPFISISAPSVISGMSGESEKALREYFEEAKRIAPCLIFIDEIDAITPKRESAQREMEKRIVAQLLTCMDDL ALEKTDGKPVIVLAATNRPDSLDAALRRGGRFDKEINMTVPSEPVREQILRALTRKMRLADDLDFKTLAKRTPGF VGADLNDLVATAGAAAIKRYLELLKSNSGEEMEMEIEGEADIISPKVKELRRLITHAKETPIGDETQTVLVSNAD FFTALPKIQPSSKREGFATIPDTTWADIGALGGIRDELSTAIVEPIKNPEIYANVGITAPTGVLLWGPPGCGKTL LAKAVANESRANFISVKGPELLNKFVGESERAVRQVFVRARSSVPCVIFFDELDALVPRRDDTLSEASARVVNTL LTELDGLGSSRQGLYVIAATNRPDIIDPAMLRPGRLETLLFVNLPSPLERVEILQTLVRNLPIEFNEDLRRLAEE CEGFSGADLGSLLRRAGYSAIKRRDSIKFEDFVAAKAFIRPSVTDLKKYEKLRRDWSGGVV* |
| Coding | >Ani_SJS72_1|g6878.t1 ATGCGTCGTGGTGGCAGGCCGACGCTGAGGCAGGGCCTCGACAAGGATATCTACCAGGTCGTGCGCAAAATCATC GACGACAATGCAGAGAATGCTCAATTCCGTCTTTCGGTGTCTAGCATTTACGATACCATCAAGCGGTCCAATTCC AGCCTGAACAGGAAGCCGAAGCGTATTCTCGAAGACAGCATCGAGCGCGTGGTGGAAGTGCTGAAAGCCGACGTC CTCGGAGAAGATGAGAACGACTCCATAGACGGCGACTTTGAGGGCCTGGAGGAGCCACCGGCACCGGAATCCAAC AGCCTCAACAAGAGCCTGGTTGGTATGTGGAATACAACCAACACCTCGAAGCCCTCGAAACAGAGCGAATCCAAC ACTGCCGAGTCAACAGCACCACCTACTACCTCTACGAAGAAACGGCACCATGGTGGTGAATCGCAGTCCTCCAAG CGCCGCAAGGCCGAGGCCGCAGTCGACCGTTCTCCTCCCACACATGTCAGTCTGGCCGATCTGGGTGGATTGGAC GATGTGGTGCAGGAGCTCGGGGATCTCGTCATCCTGCCCATGACGCGCCCGCAAGTCTACATGTCGTCCAATGTC CAGCCTCCTCGCGGTGTTCTGCTACATGGTCCGCCAGGTTGCGGTAAAACCATGATCGCAAACGCATTCGCCGCC GAACTGGGCGTCCCCTTCATCTCCATATCCGCCCCATCCGTCATCTCCGGCATGTCAGGAGAGTCCGAAAAGGCT CTCCGAGAATACTTCGAAGAAGCCAAGCGCATCGCGCCCTGCTTAATATTCATCGACGAAATCGACGCCATCACC CCCAAGCGTGAAAGCGCCCAACGAGAAATGGAGAAGCGCATCGTCGCTCAACTCCTTACCTGCATGGACGATCTG GCCCTCGAAAAGACCGACGGAAAGCCCGTTATCGTCCTGGCGGCCACTAACCGTCCCGACAGCTTGGACGCTGCT CTGCGTCGCGGAGGCCGTTTCGACAAGGAAATCAACATGACCGTCCCCTCGGAGCCCGTCCGTGAGCAGATCCTG CGCGCCCTAACCCGCAAGATGCGTCTCGCTGACGACCTCGACTTCAAAACCCTCGCCAAGCGCACCCCCGGATTC GTCGGCGCTGATCTGAACGACCTCGTCGCCACCGCCGGCGCTGCCGCCATCAAACGCTACCTGGAACTCCTCAAA TCCAACAGCGGCGAGGAAATGGAAATGGAGATTGAAGGCGAAGCCGACATCATCAGCCCTAAAGTCAAAGAACTC CGCCGCCTCATCACCCACGCCAAAGAAACCCCCATCGGCGACGAAACTCAAACCGTCCTCGTCTCCAACGCCGAC TTCTTTACAGCCCTCCCTAAGATCCAGCCCTCCTCCAAGCGCGAAGGCTTCGCCACCATTCCCGATACTACCTGG GCCGACATCGGCGCCCTCGGCGGCATCCGCGACGAACTGTCCACCGCCATCGTCGAACCCATCAAGAACCCCGAA ATCTACGCCAATGTCGGCATCACCGCGCCCACCGGCGTCCTTCTCTGGGGTCCCCCCGGTTGCGGTAAAACACTC CTCGCCAAAGCCGTGGCCAACGAGTCCCGCGCCAACTTCATCAGCGTCAAGGGTCCTGAACTCCTCAACAAATTC GTCGGTGAATCCGAACGCGCCGTCCGCCAGGTCTTCGTCCGCGCCCGCTCCTCCGTCCCTTGCGTCATCTTCTTT GATGAACTCGACGCCCTCGTCCCCCGTCGTGACGATACCCTCTCTGAAGCCTCCGCCCGTGTCGTCAACACCCTC CTCACTGAACTCGACGGCCTCGGCAGCAGCCGTCAAGGCCTCTACGTCATCGCGGCCACTAACCGGCCCGATATC ATCGACCCGGCTATGCTGCGCCCCGGTCGTCTGGAGACCCTTCTCTTCGTTAACTTGCCCAGTCCGCTCGAGCGT GTCGAGATCCTGCAGACCCTCGTCAGGAACTTGCCTATCGAGTTCAATGAGGATCTGCGCAGACTCGCCGAGGAG TGCGAGGGCTTCAGTGGTGCTGATTTGGGTAGTTTGCTTCGTCGCGCCGGTTACTCGGCTATTAAGAGACGTGAC AGCATCAAGTTCGAGGACTTTGTCGCTGCCAAGGCGTTTATTCGGCCTAGTGTTACGGATTTGAAAAAGTATGAG AAGTTGAGGAGGGATTGGAGTGGTGGCGTGGTGTAA |
| Transcript | >Ani_SJS72_1|g6878.t1 ATGCGTCGTGGTGGCAGGCCGACGCTGAGGCAGGGCCTCGACAAGGATATCTACCAGGTCGTGCGCAAAATCATC GACGACAATGCAGAGAATGCTCAATTCCGTCTTTCGGTGTCTAGCATTTACGATACCATCAAGCGGTCCAATTCC AGCCTGAACAGGAAGCCGAAGCGTATTCTCGAAGACAGCATCGAGCGCGTGGTGGAAGTGCTGAAAGCCGACGTC CTCGGAGAAGATGAGAACGACTCCATAGACGGCGACTTTGAGGGCCTGGAGGAGCCACCGGCACCGGAATCCAAC AGCCTCAACAAGAGCCTGGTTGGTATGTGGAATACAACCAACACCTCGAAGCCCTCGAAACAGAGCGAATCCAAC ACTGCCGAGTCAACAGCACCACCTACTACCTCTACGAAGAAACGGCACCATGGTGGTGAATCGCAGTCCTCCAAG CGCCGCAAGGCCGAGGCCGCAGTCGACCGTTCTCCTCCCACACATGTCAGTCTGGCCGATCTGGGTGGATTGGAC GATGTGGTGCAGGAGCTCGGGGATCTCGTCATCCTGCCCATGACGCGCCCGCAAGTCTACATGTCGTCCAATGTC CAGCCTCCTCGCGGTGTTCTGCTACATGGTCCGCCAGGTTGCGGTAAAACCATGATCGCAAACGCATTCGCCGCC GAACTGGGCGTCCCCTTCATCTCCATATCCGCCCCATCCGTCATCTCCGGCATGTCAGGAGAGTCCGAAAAGGCT CTCCGAGAATACTTCGAAGAAGCCAAGCGCATCGCGCCCTGCTTAATATTCATCGACGAAATCGACGCCATCACC CCCAAGCGTGAAAGCGCCCAACGAGAAATGGAGAAGCGCATCGTCGCTCAACTCCTTACCTGCATGGACGATCTG GCCCTCGAAAAGACCGACGGAAAGCCCGTTATCGTCCTGGCGGCCACTAACCGTCCCGACAGCTTGGACGCTGCT CTGCGTCGCGGAGGCCGTTTCGACAAGGAAATCAACATGACCGTCCCCTCGGAGCCCGTCCGTGAGCAGATCCTG CGCGCCCTAACCCGCAAGATGCGTCTCGCTGACGACCTCGACTTCAAAACCCTCGCCAAGCGCACCCCCGGATTC GTCGGCGCTGATCTGAACGACCTCGTCGCCACCGCCGGCGCTGCCGCCATCAAACGCTACCTGGAACTCCTCAAA TCCAACAGCGGCGAGGAAATGGAAATGGAGATTGAAGGCGAAGCCGACATCATCAGCCCTAAAGTCAAAGAACTC CGCCGCCTCATCACCCACGCCAAAGAAACCCCCATCGGCGACGAAACTCAAACCGTCCTCGTCTCCAACGCCGAC TTCTTTACAGCCCTCCCTAAGATCCAGCCCTCCTCCAAGCGCGAAGGCTTCGCCACCATTCCCGATACTACCTGG GCCGACATCGGCGCCCTCGGCGGCATCCGCGACGAACTGTCCACCGCCATCGTCGAACCCATCAAGAACCCCGAA ATCTACGCCAATGTCGGCATCACCGCGCCCACCGGCGTCCTTCTCTGGGGTCCCCCCGGTTGCGGTAAAACACTC CTCGCCAAAGCCGTGGCCAACGAGTCCCGCGCCAACTTCATCAGCGTCAAGGGTCCTGAACTCCTCAACAAATTC GTCGGTGAATCCGAACGCGCCGTCCGCCAGGTCTTCGTCCGCGCCCGCTCCTCCGTCCCTTGCGTCATCTTCTTT GATGAACTCGACGCCCTCGTCCCCCGTCGTGACGATACCCTCTCTGAAGCCTCCGCCCGTGTCGTCAACACCCTC CTCACTGAACTCGACGGCCTCGGCAGCAGCCGTCAAGGCCTCTACGTCATCGCGGCCACTAACCGGCCCGATATC ATCGACCCGGCTATGCTGCGCCCCGGTCGTCTGGAGACCCTTCTCTTCGTTAACTTGCCCAGTCCGCTCGAGCGT GTCGAGATCCTGCAGACCCTCGTCAGGAACTTGCCTATCGAGTTCAATGAGGATCTGCGCAGACTCGCCGAGGAG TGCGAGGGCTTCAGTGGTGCTGATTTGGGTAGTTTGCTTCGTCGCGCCGGTTACTCGGCTATTAAGAGACGTGAC AGCATCAAGTTCGAGGACTTTGTCGCTGCCAAGGCGTTTATTCGGCCTAGTGTTACGGATTTGAAAAAGTATGAG AAGTTGAGGAGGGATTGGAGTGGTGGCGTGGTGTAA |
| Gene | >Ani_SJS72_1|g6878.t1 ATGCGTCGTGGTGGCAGGCCGACGCTGAGGCAGGGCCTCGACAAGGATGTAAGTGCTGCGACTCGTCCCTCGGCT TATATCAATGCGATCATCGCTAACTCGCTATCCACAGATCTACCAGGTCGTGCGCAAAATCATCGACGACAATGC AGAGAATGCTCAATTCCGTCTTTCGGTGTCTAGCATTTACGATACCATCAAGCGGTCCAATTCCAGCCTGAACAG GAAGCCGAAGCGTATTCTCGAAGACAGCATCGAGCGCGTGGTGGAAGTGCTGAAAGCCGACGTCCTCGGAGAAGA TGAGAACGACTCCATAGACGGCGACTTTGAGGGCCTGGAGGAGCCACCGGCACCGGTATGCGACATCGCGCGCCG CTTCATGGGATAAATGTCTTCAGAAGCAGCTTCAAACCTGGCTAGCAATTGGGAGGTAGCTGACGGGAGCAGGAA TCCAACAGCCTCAACAAGAGCCTGGTTGGTATGTGGAATACAACCAACACCTCGAAGCCCTCGAAACAGAGCGAA TCCAACACTGCCGAGTCAACAGCACCACCTACTACCTCTACGAAGAAACGGCACCATGGTGGTGAATCGCAGTCC TCCAAGCGCCGCAAGGCCGAGGCCGCAGTCGACCGTTCTCCTCCCACACATGTCAGTCTGGCCGATCTGGGTGGA TTGGACGATGTGGTGCAGGAGCTCGGGGATCTCGTCATCCTGCCCATGACGCGCCCGCAAGTCTACATGTCGTCC AATGTCCAGCCTCCTCGCGGTGTTCTGCTACATGGTCCGCCAGGTTGCGGTAAAACCATGATCGCAAACGCATTC GCCGCCGAACTGGGCGTCCCCTTCATCTCCATATCCGCCCCATCCGTCATCTCCGGCATGTCAGGAGAGTCCGAA AAGGCTCTCCGAGAATACTTCGAAGAAGCCAAGCGCATCGCGCCCTGCTTAATATTCATCGACGAAATCGACGCC ATCACCCCCAAGCGTGAAAGCGCCCAACGAGAAATGGAGAAGCGCATCGTCGCTCAACTCCTTACCTGCATGGAC GATCTGGCCCTCGAAAAGACCGACGGAAAGCCCGTTATCGTCCTGGCGGCCACTAACCGTCCCGACAGCTTGGAC GCTGCTCTGCGTCGCGGAGGCCGTTTCGACAAGGAAATCAACATGACCGTCCCCTCGGAGCCCGTCCGTGAGCAG ATCCTGCGCGCCCTAACCCGCAAGATGCGTCTCGCTGACGACCTCGACTTCAAAACCCTCGCCAAGCGCACCCCC GGATTCGTCGGCGCTGATCTGAACGACCTCGTCGCCACCGCCGGCGCTGCCGCCATCAAACGCTACCTGGAACTC CTCAAATCCAACAGCGGCGAGGAAATGGAAATGGAGATTGAAGGCGAAGCCGACATCATCAGCCCTAAAGTCAAA GAACTCCGCCGCCTCATCACCCACGCCAAAGAAACCCCCATCGGCGACGAAACTCAAACCGTCCTCGTCTCCAAC GCCGACTTCTTTACAGCCCTCCCTAAGATCCAGCCCTCCTCCAAGCGCGAAGGCTTCGCCACCATTCCCGATACT ACCTGGGCCGACATCGGCGCCCTCGGCGGCATCCGCGACGAACTGTCCACCGCCATCGTCGAACCCATCAAGAAC CCCGAAATCTACGCCAATGTCGGCATCACCGCGCCCACCGGCGTCCTTCTCTGGGGTCCCCCCGGTTGCGGTAAA ACACTCCTCGCCAAAGCCGTGGCCAACGAGTCCCGCGCCAACTTCATCAGCGTCAAGGGTCCTGAACTCCTCAAC AAATTCGTCGGTGAATCCGAACGCGCCGTCCGCCAGGTCTTCGTCCGCGCCCGCTCCTCCGTCCCTTGCGTCATC TTCTTTGATGAACTCGACGCCCTCGTCCCCCGTCGTGACGATACCCTCTCTGAAGCCTCCGCCCGTGTCGTCAAC ACCCTCCTCACTGAACTCGACGGCCTCGGCAGCAGCCGTCAAGGCCTCTACGTCATCGCGGCCACTAACCGGCCC GATATCATCGACCCGGCTATGCTGCGCCCCGGTCGTCTGGAGACCCTTCTCTTCGTTAACTTGCCCAGTCCGCTC GAGCGTGTCGAGATCCTGCAGACCCTCGTCAGGAACTTGCCTATCGAGTTCAATGAGGATCTGCGCAGACTCGCC GAGGAGTGCGAGGGCTTCAGTGGTGCTGATTTGGGTAGTTTGCTTCGTCGCGCCGGTTACTCGGCTATTAAGAGA CGTGACAGCATCAAGTTCGAGGACTTTGTCGCTGCCAAGGCGTTTATTCGGCCTAGTGTTACGGATTTGAAAAAG TATGAGAAGTTGAGGAGGGATTGGAGTGGTGGCGTGGTGTAA |