© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS72_1|g6801.t1 |
| Gene name | |
| Location | scaffold_052:162384..163483 |
| Strand | + |
| Gene length (bp) | 1099 |
| Transcript length (bp) | 1041 |
| Coding sequence length (bp) | 1041 |
| Protein length (aa) | 347 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00106 | adh_short | short chain dehydrogenase | 1.1E-35 | 69 | 260 |
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 5.3E-21 | 74 | 260 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 39 | 19 |
| 2 | 200 | 222 | 22 |
| 3 | 297 | 319 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g6801.t1 MDFLTKHLDCLSNWQLNLQPGWQTVGASALLAAGSLFVVSRALVFVRVLLSLFVLPGKPLRSFGPKGSWAVVTGA SDGLGKEFALQLARADFNILLVSRTASKLDTLSNEITTKFPSVQTKTLAMDFARNQDSDYEKLKELVDELDVSVL VNNVGKSHSIPTPFALTPEDEMTDIVTINCLGTLRATQLVVPGMMQRKRGLVLTMGSFGGLLPTPLLATYSGSKA FLQQWSTSLGSELEPYGITVELVQAYLITSAMSKIRRTSATIPDPRSFVKSVLTKIGRNGGSPTYAYSSSPYWSH GLMAWFLTCVTGTMGKIVVSQNKGMHESIRKRALRKAEREKGKKST* |
| Coding | >Ani_SJS72_1|g6801.t1 ATGGACTTTCTGACAAAACATCTGGACTGCCTGTCCAACTGGCAGTTGAACCTGCAGCCTGGCTGGCAGACGGTG GGCGCCTCGGCTCTTCTCGCCGCTGGCAGCTTGTTCGTCGTCTCTCGGGCACTCGTTTTCGTCAGGGTCCTCCTG AGCTTGTTCGTGCTCCCTGGCAAGCCCCTCCGCTCCTTCGGCCCTAAGGGCAGCTGGGCCGTGGTCACAGGTGCC TCCGATGGACTCGGCAAGGAATTCGCTCTTCAGCTCGCCCGCGCTGACTTCAACATCCTCCTCGTTTCCCGTACT GCATCCAAGCTTGATACCCTTTCCAATGAAATCACAACCAAGTTCCCCTCCGTGCAGACCAAGACCTTGGCGATG GACTTCGCCCGCAACCAGGACAGCGACTACGAGAAGCTGAAGGAATTGGTGGATGAATTGGACGTGTCCGTCCTG GTCAACAACGTTGGAAAGAGTCACAGCATCCCCACTCCCTTCGCTCTGACCCCCGAGGATGAGATGACTGATATC GTGACCATCAACTGCCTGGGTACCTTGCGGGCCACCCAGCTGGTCGTTCCGGGTATGATGCAGCGCAAGCGCGGA TTGGTCTTGACTATGGGCTCGTTCGGTGGACTTCTCCCCACTCCTCTTCTTGCTACCTACTCCGGCAGCAAGGCT TTCCTGCAGCAATGGTCCACTTCCCTTGGTTCGGAGCTCGAGCCTTACGGAATTACTGTCGAGTTGGTCCAGGCC TACCTTATCACCTCTGCTATGTCCAAGATCCGCCGGACCAGTGCTACGATCCCCGACCCCCGCTCATTCGTGAAG TCGGTCCTGACTAAGATTGGCCGCAACGGCGGATCTCCCACGTACGCGTACAGCTCTTCCCCTTACTGGAGCCAC GGATTGATGGCCTGGTTCTTGACCTGCGTCACTGGTACCATGGGCAAGATTGTCGTTAGCCAGAACAAGGGCATG CACGAGTCTATCCGGAAGCGTGCTCTGCGCAAGGCCGAGCGCGAGAAGGGCAAGAAGAGCACCTAA |
| Transcript | >Ani_SJS72_1|g6801.t1 ATGGACTTTCTGACAAAACATCTGGACTGCCTGTCCAACTGGCAGTTGAACCTGCAGCCTGGCTGGCAGACGGTG GGCGCCTCGGCTCTTCTCGCCGCTGGCAGCTTGTTCGTCGTCTCTCGGGCACTCGTTTTCGTCAGGGTCCTCCTG AGCTTGTTCGTGCTCCCTGGCAAGCCCCTCCGCTCCTTCGGCCCTAAGGGCAGCTGGGCCGTGGTCACAGGTGCC TCCGATGGACTCGGCAAGGAATTCGCTCTTCAGCTCGCCCGCGCTGACTTCAACATCCTCCTCGTTTCCCGTACT GCATCCAAGCTTGATACCCTTTCCAATGAAATCACAACCAAGTTCCCCTCCGTGCAGACCAAGACCTTGGCGATG GACTTCGCCCGCAACCAGGACAGCGACTACGAGAAGCTGAAGGAATTGGTGGATGAATTGGACGTGTCCGTCCTG GTCAACAACGTTGGAAAGAGTCACAGCATCCCCACTCCCTTCGCTCTGACCCCCGAGGATGAGATGACTGATATC GTGACCATCAACTGCCTGGGTACCTTGCGGGCCACCCAGCTGGTCGTTCCGGGTATGATGCAGCGCAAGCGCGGA TTGGTCTTGACTATGGGCTCGTTCGGTGGACTTCTCCCCACTCCTCTTCTTGCTACCTACTCCGGCAGCAAGGCT TTCCTGCAGCAATGGTCCACTTCCCTTGGTTCGGAGCTCGAGCCTTACGGAATTACTGTCGAGTTGGTCCAGGCC TACCTTATCACCTCTGCTATGTCCAAGATCCGCCGGACCAGTGCTACGATCCCCGACCCCCGCTCATTCGTGAAG TCGGTCCTGACTAAGATTGGCCGCAACGGCGGATCTCCCACGTACGCGTACAGCTCTTCCCCTTACTGGAGCCAC GGATTGATGGCCTGGTTCTTGACCTGCGTCACTGGTACCATGGGCAAGATTGTCGTTAGCCAGAACAAGGGCATG CACGAGTCTATCCGGAAGCGTGCTCTGCGCAAGGCCGAGCGCGAGAAGGGCAAGAAGAGCACCTAA |
| Gene | >Ani_SJS72_1|g6801.t1 ATGGACTTTCTGACAAAACATCTGGACTGCCTGTCCAACTGGCAGTTGAACCTGCAGCCTGGCTGGCAGACGGTG GGCGCCTCGGCTCTTCTCGCCGCTGGCAGCTTGTTCGTCGTCTCTCGGGCACTCGTTTTCGTCAGGGTCCTCCTG AGCTTGTTCGTGCTCCCTGGCAAGCCCGTATGTTGTCCCTGACAATCTCAATTGGAGACTATATCACTGACTTCC AATCTGCCAGCTCCGCTCCTTCGGCCCTAAGGGCAGCTGGGCCGTGGTCACAGGTGCCTCCGATGGACTCGGCAA GGAATTCGCTCTTCAGCTCGCCCGCGCTGACTTCAACATCCTCCTCGTTTCCCGTACTGCATCCAAGCTTGATAC CCTTTCCAATGAAATCACAACCAAGTTCCCCTCCGTGCAGACCAAGACCTTGGCGATGGACTTCGCCCGCAACCA GGACAGCGACTACGAGAAGCTGAAGGAATTGGTGGATGAATTGGACGTGTCCGTCCTGGTCAACAACGTTGGAAA GAGTCACAGCATCCCCACTCCCTTCGCTCTGACCCCCGAGGATGAGATGACTGATATCGTGACCATCAACTGCCT GGGTACCTTGCGGGCCACCCAGCTGGTCGTTCCGGGTATGATGCAGCGCAAGCGCGGATTGGTCTTGACTATGGG CTCGTTCGGTGGACTTCTCCCCACTCCTCTTCTTGCTACCTACTCCGGCAGCAAGGCTTTCCTGCAGCAATGGTC CACTTCCCTTGGTTCGGAGCTCGAGCCTTACGGAATTACTGTCGAGTTGGTCCAGGCCTACCTTATCACCTCTGC TATGTCCAAGATCCGCCGGACCAGTGCTACGATCCCCGACCCCCGCTCATTCGTGAAGTCGGTCCTGACTAAGAT TGGCCGCAACGGCGGATCTCCCACGTACGCGTACAGCTCTTCCCCTTACTGGAGCCACGGATTGATGGCCTGGTT CTTGACCTGCGTCACTGGTACCATGGGCAAGATTGTCGTTAGCCAGAACAAGGGCATGCACGAGTCTATCCGGAA GCGTGCTCTGCGCAAGGCCGAGCGCGAGAAGGGCAAGAAGAGCACCTAA |