© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS72_1|g6757.t1 |
| Gene name | |
| Location | scaffold_052:16954..18943 |
| Strand | + |
| Gene length (bp) | 1989 |
| Transcript length (bp) | 1725 |
| Coding sequence length (bp) | 1725 |
| Protein length (aa) | 575 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00955 | HCO3_cotransp | HCO3- transporter family | 2.8E-39 | 31 | 201 |
| PF00955 | HCO3_cotransp | HCO3- transporter family | 1.2E-12 | 255 | 368 |
| PF00955 | HCO3_cotransp | HCO3- transporter family | 8.2E-07 | 405 | 490 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0006820 | anion transport | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0006811 | ion transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 53 | 75 | 22 |
| 2 | 87 | 109 | 22 |
| 3 | 113 | 135 | 22 |
| 4 | 148 | 170 | 22 |
| 5 | 198 | 220 | 22 |
| 6 | 280 | 297 | 17 |
| 7 | 323 | 345 | 22 |
| 8 | 411 | 433 | 22 |
| 9 | 443 | 465 | 22 |
| 10 | 485 | 507 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g6757.t1 MPGTKYFGGQSPYTYSYDNRTEWRRFRMLNPCRGMYHDVRRRLPHYWSDIRDALTYRTIASTIRIYFINILPAIA YTLDMYRRTGEFYGINEALFSSALAAMVFSVLGAQPLTIVGITGLISLFNYTIYDIIVIYEPAIYANFMCWTAIW AAIFHWIVAVCNLCDYMRYVTDFSSESFGAYVGIIYCIKGVEELVNEFTVYGPTAGFMSCMIAILIYLLSTPVNL RLTIRQIGTIFWVGFAHIPGNLKATGISFVPITRAFYPTQPRGWLIHFWELETKWVFAALPFGFLVMLLFYYDHN VSSLGAQGRQYPLEKPAGFHWDFFLLGCTTFIAGITGIPMPNGLVPQVQSPTFKHTNSLLTYPPIQAPVHTTSLT VTETTLHIIPISDPESEGTEICRPIITPTAVIEQRISHFLMGLAIIGTMTGPLLIVLHTMPAAVFAGVFFIVGWG SIESNGILHKIIFLLREDRFIPRNEKLLRVPRRKIMLYVMCQVIGVAACVAISQTIAAIGFPILIIGLIPFRVWV VPRWFGVEELGVLDGLTADGEAVLCSLGGPPRFPGEARGVEGERQKGGE* |
| Coding | >Ani_SJS72_1|g6757.t1 ATGCCCGGCACTAAGTACTTCGGTGGGCAGAGTCCATATACCTACTCCTACGACAATCGGACAGAATGGAGACGC TTTCGTATGCTGAATCCATGCAGAGGCATGTATCACGATGTCCGTCGACGACTACCCCACTACTGGAGTGATATT CGAGATGCGCTCACCTATCGAACCATTGCAAGTACAATTCGCATATACTTCATCAATATTCTCCCAGCTATCGCC TACACCTTGGATATGTATCGCCGAACCGGAGAGTTCTATGGCATCAACGAAGCGCTGTTTTCCTCTGCTCTCGCG GCTATGGTTTTCAGCGTCTTGGGCGCACAACCACTCACTATCGTTGGTATCACAGGACTAATATCGCTGTTCAAC TATACCATATATGATATCATAGTCATCTATGAGCCGGCTATATATGCCAACTTCATGTGCTGGACTGCTATCTGG GCAGCGATCTTTCATTGGATTGTTGCCGTGTGCAACCTCTGCGATTATATGCGCTATGTCACTGACTTTTCATCT GAATCATTTGGTGCATATGTTGGAATCATCTATTGCATAAAGGGAGTCGAAGAGCTGGTGAATGAGTTCACTGTC TACGGTCCAACCGCAGGCTTCATGAGCTGCATGATTGCTATACTGATTTACCTCCTTTCTACGCCTGTAAACCTC CGGCTCACTATTCGCCAGATCGGAACAATCTTCTGGGTAGGATTCGCGCATATCCCCGGCAATCTCAAAGCCACT GGCATCTCATTCGTGCCCATCACTCGGGCATTCTATCCAACACAGCCGCGTGGCTGGCTAATTCACTTCTGGGAA CTGGAGACAAAATGGGTCTTTGCAGCCCTGCCTTTCGGATTCTTGGTCATGCTGCTCTTCTATTATGACCATAAC GTCAGCAGTCTCGGAGCTCAAGGCCGACAATACCCACTGGAAAAGCCAGCCGGATTCCACTGGGACTTCTTTCTC CTAGGCTGCACCACCTTCATCGCCGGTATCACTGGCATCCCAATGCCCAACGGCCTCGTCCCACAGGTACAATCC CCCACTTTCAAGCACACAAACTCCTTACTTACATACCCACCAATCCAGGCACCCGTCCACACCACCTCCCTAACC GTTACTGAAACCACCCTTCACATCATCCCTATCTCAGACCCAGAGTCCGAGGGCACCGAAATCTGCCGACCCATC ATTACCCCGACAGCTGTTATCGAGCAACGCATCTCCCACTTCCTAATGGGTCTCGCCATAATTGGCACCATGACC GGACCTCTTCTGATAGTCCTACACACCATGCCCGCCGCCGTGTTCGCAGGTGTCTTCTTCATTGTAGGCTGGGGA TCCATAGAATCGAACGGCATTCTGCACAAGATCATCTTTCTCCTTCGTGAGGATCGATTTATCCCGCGGAATGAG AAGTTACTCCGTGTTCCGAGGCGGAAGATTATGCTCTATGTGATGTGCCAGGTTATTGGAGTTGCCGCGTGCGTG GCGATCTCGCAGACTATTGCGGCAATTGGGTTCCCGATTTTGATCATTGGGTTGATTCCGTTTAGAGTGTGGGTT GTACCGAGGTGGTTTGGAGTGGAGGAGTTGGGGGTGTTGGATGGGTTGACGGCGGATGGGGAGGCGGTTTTGTGT AGTTTGGGAGGACCACCTAGGTTTCCTGGGGAGGCAAGAGGGGTGGAGGGTGAGAGACAGAAGGGTGGGGAGTGA |
| Transcript | >Ani_SJS72_1|g6757.t1 ATGCCCGGCACTAAGTACTTCGGTGGGCAGAGTCCATATACCTACTCCTACGACAATCGGACAGAATGGAGACGC TTTCGTATGCTGAATCCATGCAGAGGCATGTATCACGATGTCCGTCGACGACTACCCCACTACTGGAGTGATATT CGAGATGCGCTCACCTATCGAACCATTGCAAGTACAATTCGCATATACTTCATCAATATTCTCCCAGCTATCGCC TACACCTTGGATATGTATCGCCGAACCGGAGAGTTCTATGGCATCAACGAAGCGCTGTTTTCCTCTGCTCTCGCG GCTATGGTTTTCAGCGTCTTGGGCGCACAACCACTCACTATCGTTGGTATCACAGGACTAATATCGCTGTTCAAC TATACCATATATGATATCATAGTCATCTATGAGCCGGCTATATATGCCAACTTCATGTGCTGGACTGCTATCTGG GCAGCGATCTTTCATTGGATTGTTGCCGTGTGCAACCTCTGCGATTATATGCGCTATGTCACTGACTTTTCATCT GAATCATTTGGTGCATATGTTGGAATCATCTATTGCATAAAGGGAGTCGAAGAGCTGGTGAATGAGTTCACTGTC TACGGTCCAACCGCAGGCTTCATGAGCTGCATGATTGCTATACTGATTTACCTCCTTTCTACGCCTGTAAACCTC CGGCTCACTATTCGCCAGATCGGAACAATCTTCTGGGTAGGATTCGCGCATATCCCCGGCAATCTCAAAGCCACT GGCATCTCATTCGTGCCCATCACTCGGGCATTCTATCCAACACAGCCGCGTGGCTGGCTAATTCACTTCTGGGAA CTGGAGACAAAATGGGTCTTTGCAGCCCTGCCTTTCGGATTCTTGGTCATGCTGCTCTTCTATTATGACCATAAC GTCAGCAGTCTCGGAGCTCAAGGCCGACAATACCCACTGGAAAAGCCAGCCGGATTCCACTGGGACTTCTTTCTC CTAGGCTGCACCACCTTCATCGCCGGTATCACTGGCATCCCAATGCCCAACGGCCTCGTCCCACAGGTACAATCC CCCACTTTCAAGCACACAAACTCCTTACTTACATACCCACCAATCCAGGCACCCGTCCACACCACCTCCCTAACC GTTACTGAAACCACCCTTCACATCATCCCTATCTCAGACCCAGAGTCCGAGGGCACCGAAATCTGCCGACCCATC ATTACCCCGACAGCTGTTATCGAGCAACGCATCTCCCACTTCCTAATGGGTCTCGCCATAATTGGCACCATGACC GGACCTCTTCTGATAGTCCTACACACCATGCCCGCCGCCGTGTTCGCAGGTGTCTTCTTCATTGTAGGCTGGGGA TCCATAGAATCGAACGGCATTCTGCACAAGATCATCTTTCTCCTTCGTGAGGATCGATTTATCCCGCGGAATGAG AAGTTACTCCGTGTTCCGAGGCGGAAGATTATGCTCTATGTGATGTGCCAGGTTATTGGAGTTGCCGCGTGCGTG GCGATCTCGCAGACTATTGCGGCAATTGGGTTCCCGATTTTGATCATTGGGTTGATTCCGTTTAGAGTGTGGGTT GTACCGAGGTGGTTTGGAGTGGAGGAGTTGGGGGTGTTGGATGGGTTGACGGCGGATGGGGAGGCGGTTTTGTGT AGTTTGGGAGGACCACCTAGGTTTCCTGGGGAGGCAAGAGGGGTGGAGGGTGAGAGACAGAAGGGTGGGGAGTGA |
| Gene | >Ani_SJS72_1|g6757.t1 ATGCCCGGCACTAAGTACTTCGGTGGGCAGAGTCCATATACCTACTCCTACGACAATCGGACAGAATGGAGACGC TTTCGTATGCTGAATCCATGCAGAGGCATGTATCACGATGTCCGTCGACGACTACCCCACTACTGGAGTGATATT CGAGATGCGCTCACCTATCGAACCATTGCAAGTACAATTCGCATATACTTCATCAAGTAGGCCCCTAAATAGACC ACTTTGGTGTTGTCCTTACTGAAAATATCCAGTATTCTCCCAGCTATCGCCTACACCTTGGATATGTATCGCCGA ACCGGAGAGTTCTATGGCATCAACGAAGCGCTGTTTTCCTCTGCTCTCGCGGCTATGGTTTTCAGCGTCTTGGGC GCACAACCACTCACTATCGTTGGTATCACAGGACTAATATCGCTGTTCAACTATACCATATATGATATCATAGTC ATCTATGAGCCGGCTATATATGCCAACTTCATGTGCTGGACTGCTATCTGGGCAGCGATCTTTCATTGGATTGTT GCCGTGTGCAACCTCTGCGATTATATGCGCTATGTCACTGACTTTTCATCTGAATCATTTGGTGCATATGTTGGA ATCATCTATTGCAGTAAGTCAGGAACGGTATACCTTCTTGTAGGGACGGCTACTAAGTCGAGTAGTAAAGGGAGT CGAAGAGCTGGTGAATGAGTTCACTGTCTACGGTCCAACCGCAGGCTTCATGAGCTGCATGATTGCTATACTGTA TTTCTTCACAATATATGGCCTAGAATTGGTAGGATCCAGCACGATTTGTCGACCATGGCTTCGTGAAGTACTTGC AGATTATGCTTATGTGGTAGGATTTACCTCCTTTCTACGCCTGTAAACCTCCGGCTCACTATTCGCCAGATCGGA ACAATCTTCTGGGTAGGATTCGCGCATATCCCCGGCAATCTCAAAGCCACTGGCATCTCATTCGTGCCCATCACT CGGGCATTCTATCCAACACAGCCGCGTGGCTGGCTAATTCACTTCTGGGAACTGGAGACAAAATGGGTCTTTGCA GCCCTGCCTTTCGGATTCTTGGTCATGCTGCTCTTCTATTATGACCATGTAAGTAATTCCCCAGTCAACGCGAAT ATTACTTCCCCCTAGTGACATAATAACATCGAACAGAACGTCAGCAGTCTCGGAGCTCAAGGCCGACAATACCCA CTGGAAAAGCCAGCCGGATTCCACTGGGACTTCTTTCTCCTAGGCTGCACCACCTTCATCGCCGGTATCACTGGC ATCCCAATGCCCAACGGCCTCGTCCCACAGGTACAATCCCCCACTTTCAAGCACACAAACTCCTTACTTACATAC CCACCAATCCAGGCACCCGTCCACACCACCTCCCTAACCGTTACTGAAACCACCCTTCACATCATCCCTATCTCA GACCCAGAGTCCGAGGGCACCGAAATCTGCCGACCCATCATTACCCCGACAGCTGTTATCGAGCAACGCATCTCC CACTTCCTAATGGGTCTCGCCATAATTGGCACCATGACCGGACCTCTTCTGATAGTCCTACACACCATGCCCGCC GCCGTGTTCGCAGGTGTCTTCTTCATTGTAGGCTGGGGATCCATAGAATCGAACGGCATTCTGCACAAGATCATC TTTCTCCTTCGTGAGGATCGATTTATCCCGCGGAATGAGAAGTTACTCCGTGTTCCGAGGCGGAAGATTATGCTC TATGTGATGTGCCAGGTTATTGGAGTTGCCGCGTGCGTGGCGATCTCGCAGACTATTGCGGCAATTGGGTTCCCG ATTTTGATCATTGGGTTGATTCCGTTTAGAGTGTGGGTTGTACCGAGGTGGTTTGGAGTGGAGGAGTTGGGGGTG TTGGATGGGTTGACGGCGGATGGGGAGGCGGTTTTGTGTAGTTTGGGAGGACCACCTAGGTTTCCTGGGGAGGCA AGAGGGGTGGAGGGTGAGAGACAGAAGGGTGGGGAGTGA |