© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g6589.t1 |
| Gene name | |
| Location | scaffold_049:252056..253220 |
| Strand | + |
| Gene length (bp) | 1164 |
| Transcript length (bp) | 1056 |
| Coding sequence length (bp) | 1056 |
| Protein length (aa) | 352 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 2.8E-08 | 3 | 160 |
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 6.8E-15 | 196 | 338 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 23 | 45 | 22 |
| 2 | 58 | 80 | 22 |
| 3 | 95 | 117 | 22 |
| 4 | 138 | 160 | 22 |
| 5 | 192 | 214 | 22 |
| 6 | 259 | 281 | 22 |
| 7 | 291 | 313 | 22 |
| 8 | 320 | 342 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g6589.t1 MVPSANLLGFAGGELAKKLPKVFGVLLETFLSSVVEIVLFMVLIHKDRGGNLIPVIQAAILGSILANLLLCLGLC FFFGGIGREDQSFHEAVSEVGSGLLLVAGFGLLIPSAFYSTLKSNASHTHVQISTETLNQSTLIISRATAVILLV AFIMYLFYNLHSHHSIFDEVLEFDEHLDEDREREMKRAKLTLIECFVAIAIALACVCMSAVFLVEEIEDIVNERG VSDNFMGLILVPLVEKAAEHLTAIDEAWDNQINFALFHCLGPSIQTALLNAPLAVIVGWGIGKDMGLNFEIFMIV LVVLSILVVGNFLRDGKSNYLEGGLCVLVYVIIAVTTWYYPQIVVEGEAEA* |
| Coding | >Ani_SJS72_1|g6589.t1 ATGGTACCTTCAGCGAACTTGCTTGGATTCGCGGGTGGCGAGCTAGCCAAGAAGCTGCCCAAGGTATTCGGTGTC TTGCTGGAGACCTTTCTCAGTTCCGTTGTGGAAATCGTCCTTTTCATGGTTCTGATCCACAAGGACAGGGGAGGC AATCTGATCCCTGTTATTCAAGCCGCCATTCTAGGCTCTATCCTGGCGAACCTCCTTCTCTGCTTAGGCCTATGC TTTTTCTTTGGAGGCATTGGGCGTGAAGATCAATCATTCCATGAGGCCGTCAGCGAAGTAGGCTCAGGACTCCTG CTAGTGGCAGGGTTTGGCCTTCTGATCCCGAGTGCCTTCTATTCGACTTTGAAAAGCAATGCATCGCATACACAT GTACAAATCTCGACAGAAACACTGAATCAGTCTACACTGATCATTAGCAGAGCCACAGCCGTCATACTCCTAGTG GCTTTTATCATGTATCTGTTCTACAACCTCCATAGCCATCATAGCATATTCGACGAAGTCCTTGAATTCGACGAG CATTTGGATGAAGATCGCGAACGGGAAATGAAGCGGGCAAAGCTTACGTTAATTGAATGCTTTGTTGCCATTGCA ATAGCTCTTGCATGCGTCTGCATGTCGGCCGTCTTTCTGGTGGAGGAAATAGAGGATATTGTGAATGAGAGAGGT GTATCAGACAACTTCATGGGCCTTATTCTTGTGCCGCTTGTTGAGAAGGCAGCAGAGCACTTGACTGCTATCGAT GAAGCCTGGGACAATCAGATTAATTTTGCACTCTTCCACTGCCTGGGACCGTCGATACAGACTGCGCTGTTGAAC GCACCGCTTGCAGTCATTGTGGGTTGGGGCATTGGCAAGGACATGGGTCTGAATTTCGAGATCTTCATGATCGTT TTGGTCGTTTTGTCCATCTTAGTTGTTGGAAACTTTCTTCGAGATGGCAAGTCCAACTATTTGGAAGGAGGGCTC TGCGTTCTGGTCTACGTTATTATCGCCGTCACTACATGGTACTATCCTCAGATTGTAGTGGAGGGCGAGGCTGAG GCATGA |
| Transcript | >Ani_SJS72_1|g6589.t1 ATGGTACCTTCAGCGAACTTGCTTGGATTCGCGGGTGGCGAGCTAGCCAAGAAGCTGCCCAAGGTATTCGGTGTC TTGCTGGAGACCTTTCTCAGTTCCGTTGTGGAAATCGTCCTTTTCATGGTTCTGATCCACAAGGACAGGGGAGGC AATCTGATCCCTGTTATTCAAGCCGCCATTCTAGGCTCTATCCTGGCGAACCTCCTTCTCTGCTTAGGCCTATGC TTTTTCTTTGGAGGCATTGGGCGTGAAGATCAATCATTCCATGAGGCCGTCAGCGAAGTAGGCTCAGGACTCCTG CTAGTGGCAGGGTTTGGCCTTCTGATCCCGAGTGCCTTCTATTCGACTTTGAAAAGCAATGCATCGCATACACAT GTACAAATCTCGACAGAAACACTGAATCAGTCTACACTGATCATTAGCAGAGCCACAGCCGTCATACTCCTAGTG GCTTTTATCATGTATCTGTTCTACAACCTCCATAGCCATCATAGCATATTCGACGAAGTCCTTGAATTCGACGAG CATTTGGATGAAGATCGCGAACGGGAAATGAAGCGGGCAAAGCTTACGTTAATTGAATGCTTTGTTGCCATTGCA ATAGCTCTTGCATGCGTCTGCATGTCGGCCGTCTTTCTGGTGGAGGAAATAGAGGATATTGTGAATGAGAGAGGT GTATCAGACAACTTCATGGGCCTTATTCTTGTGCCGCTTGTTGAGAAGGCAGCAGAGCACTTGACTGCTATCGAT GAAGCCTGGGACAATCAGATTAATTTTGCACTCTTCCACTGCCTGGGACCGTCGATACAGACTGCGCTGTTGAAC GCACCGCTTGCAGTCATTGTGGGTTGGGGCATTGGCAAGGACATGGGTCTGAATTTCGAGATCTTCATGATCGTT TTGGTCGTTTTGTCCATCTTAGTTGTTGGAAACTTTCTTCGAGATGGCAAGTCCAACTATTTGGAAGGAGGGCTC TGCGTTCTGGTCTACGTTATTATCGCCGTCACTACATGGTACTATCCTCAGATTGTAGTGGAGGGCGAGGCTGAG GCATGA |
| Gene | >Ani_SJS72_1|g6589.t1 ATGGTACCTTCAGCGAACTTGCTTGGATTCGCGGGTGGCGAGCTAGCCAAGAAGCTGCCCAAGGTATTCGGTGTC TTGCTGGAGACCTTTCTCAGTTCCGTTGTGGAAATCGTCCTTTTCATGGTTCTGATCCACAAGGACAGGGGAGGC AATCTGATCCCTGTTATTCAAGCCGCCATTCTAGGCTCTATCCTGGCGAACCTCCTTCTCTGCTTAGGCCTATGC TTTTTCTTTGGAGGCATTGGGCGTGAAGATCAATCATTCCATGAGGCCGTCAGCGAAGTAGGCTCAGGACTCCTG CTAGTGGCAGGGTTTGGCCTTCTGATCCCGAGTGCCTTCTATTCGACTTTGAAAAGCAATGCATCGCATACACAT GTACAAATCTCGACAGAAACACTGAATCAGTCTACACTGATCATTAGCAGAGCCACAGCCGTCATACTCCTAGTG GCTTTTATCATGTATGTTGTCGTGTCCCGAGATAGTTTTATGGATCTGTCTACTCACATGCTTTAGGTATCTGTT CTACAACCTCCATAGCCATCATAGCATATTCGACGAAGTCCTTGAATTCGACGAGCATTTGGATGAAGATCGCGA ACGGGAAATGAAGCGGGCAAAGCTTACGTTAATTGAATGCTTTGTTGCCATTGCAATAGCTCTTGCATGCGTCTG CATGTCGGCCGTCTTTCTGGTGGAGGAAATAGAGGATATTGTGAATGAGAGAGGTGTATCAGACAACTTCATGGG CCTTATTCTTGTGCCGCTTGTTGAGAAGGCAGCAGAGCACTTGACTGCTATCGATGAAGCCTGGTAATTACATCC ATTGGCGACTGTTTACTCCGCATCTTCTGACTCCGAAATAGGGACAATCAGATTAATTTTGCACTCTTCCACTGC CTGGGACCGTCGATACAGACTGCGCTGTTGAACGCACCGCTTGCAGTCATTGTGGGTTGGGGCATTGGCAAGGAC ATGGGTCTGAATTTCGAGATCTTCATGATCGTTTTGGTCGTTTTGTCCATCTTAGTTGTTGGAAACTTTCTTCGA GATGGCAAGTCCAACTATTTGGAAGGAGGGCTCTGCGTTCTGGTCTACGTTATTATCGCCGTCACTACATGGTAC TATCCTCAGATTGTAGTGGAGGGCGAGGCTGAGGCATGA |