© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g6554.t1 |
| Gene name | |
| Location | scaffold_049:150321..151449 |
| Strand | + |
| Gene length (bp) | 1128 |
| Transcript length (bp) | 954 |
| Coding sequence length (bp) | 954 |
| Protein length (aa) | 318 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01569 | PAP2 | PAP2 superfamily | 1.5E-25 | 113 | 259 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 32 | 54 | 22 |
| 2 | 80 | 102 | 22 |
| 3 | 111 | 130 | 19 |
| 4 | 184 | 203 | 19 |
| 5 | 210 | 227 | 17 |
| 6 | 237 | 255 | 18 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g6554.t1 MPRSGLAAGSASPRSPVREATGTMSRLYQRSYPVVDAVALACIVGAWILIQIFATPFHRMFSLDNRSIQYPFAVV ERVPVVWSIIYAGVIPFLVLLAWAAMFRPYPHKVQVTLLGFLIALMLTSLITDIIKNAAGRPRPDLISRCLPRKG TPKDLLVSWTVCTQTNEHILQEGWRSFPSGHSSFSFGGLGYMSLFLSGQMHVFRPRTDLCRCLVAFVPLLGALLI AISRLDDYRHDVYDVTCGSLLGLTVAYFSYRRYYPALRSIKCDCPYGRDDIIGPDGFSKLPGDEEQQLPGSASVA RQWDARESYQLAESASS* |
| Coding | >Ani_SJS72_1|g6554.t1 ATGCCTCGCAGTGGACTTGCTGCTGGCTCAGCAAGCCCCCGCTCTCCAGTGAGAGAAGCAACTGGCACAATGTCC CGCTTGTATCAGCGCTCGTACCCGGTCGTCGACGCTGTCGCGCTGGCGTGCATTGTAGGGGCTTGGATACTGATT CAGATATTTGCGACCCCCTTTCATCGCATGTTCTCCCTCGACAATAGAAGTATCCAGTATCCCTTCGCTGTCGTG GAGAGAGTTCCCGTTGTTTGGTCTATCATCTATGCTGGGGTCATTCCGTTCCTCGTCCTCCTCGCCTGGGCAGCC ATGTTCCGTCCATACCCTCACAAGGTCCAAGTGACCTTGCTGGGCTTCCTCATCGCGCTTATGCTAACGAGCCTT ATCACCGATATCATAAAGAACGCCGCTGGGCGACCTCGCCCTGATTTGATTTCTCGCTGTTTACCAAGGAAGGGT ACCCCCAAGGATTTGTTGGTTTCATGGACGGTGTGCACTCAAACCAACGAGCACATCCTACAAGAGGGATGGAGG AGTTTTCCCAGCGGCCACAGTAGCTTCTCATTTGGTGGACTCGGTTATATGTCATTATTCCTCTCCGGTCAAATG CACGTCTTCAGACCGAGGACCGACCTCTGTCGCTGCCTTGTGGCTTTTGTTCCGCTCCTCGGCGCTCTGTTAATT GCCATTTCTCGTCTGGACGACTACCGCCACGATGTGTACGATGTTACTTGTGGATCGCTGCTTGGGTTGACGGTA GCTTATTTCTCGTACCGACGATATTATCCGGCCCTTCGGTCAATCAAGTGCGACTGCCCCTATGGCAGAGACGAT ATCATCGGCCCAGATGGATTCTCCAAACTGCCTGGTGATGAGGAACAGCAACTGCCGGGCTCAGCATCTGTTGCG CGTCAATGGGATGCTCGGGAATCCTATCAACTTGCGGAGTCTGCATCCTCTTAA |
| Transcript | >Ani_SJS72_1|g6554.t1 ATGCCTCGCAGTGGACTTGCTGCTGGCTCAGCAAGCCCCCGCTCTCCAGTGAGAGAAGCAACTGGCACAATGTCC CGCTTGTATCAGCGCTCGTACCCGGTCGTCGACGCTGTCGCGCTGGCGTGCATTGTAGGGGCTTGGATACTGATT CAGATATTTGCGACCCCCTTTCATCGCATGTTCTCCCTCGACAATAGAAGTATCCAGTATCCCTTCGCTGTCGTG GAGAGAGTTCCCGTTGTTTGGTCTATCATCTATGCTGGGGTCATTCCGTTCCTCGTCCTCCTCGCCTGGGCAGCC ATGTTCCGTCCATACCCTCACAAGGTCCAAGTGACCTTGCTGGGCTTCCTCATCGCGCTTATGCTAACGAGCCTT ATCACCGATATCATAAAGAACGCCGCTGGGCGACCTCGCCCTGATTTGATTTCTCGCTGTTTACCAAGGAAGGGT ACCCCCAAGGATTTGTTGGTTTCATGGACGGTGTGCACTCAAACCAACGAGCACATCCTACAAGAGGGATGGAGG AGTTTTCCCAGCGGCCACAGTAGCTTCTCATTTGGTGGACTCGGTTATATGTCATTATTCCTCTCCGGTCAAATG CACGTCTTCAGACCGAGGACCGACCTCTGTCGCTGCCTTGTGGCTTTTGTTCCGCTCCTCGGCGCTCTGTTAATT GCCATTTCTCGTCTGGACGACTACCGCCACGATGTGTACGATGTTACTTGTGGATCGCTGCTTGGGTTGACGGTA GCTTATTTCTCGTACCGACGATATTATCCGGCCCTTCGGTCAATCAAGTGCGACTGCCCCTATGGCAGAGACGAT ATCATCGGCCCAGATGGATTCTCCAAACTGCCTGGTGATGAGGAACAGCAACTGCCGGGCTCAGCATCTGTTGCG CGTCAATGGGATGCTCGGGAATCCTATCAACTTGCGGAGTCTGCATCCTCTTAA |
| Gene | >Ani_SJS72_1|g6554.t1 ATGCCTCGCAGTGGACTTGCTGCTGGCTCAGCAAGCCCCCGCTCTCCAGTGAGAGAAGCAACTGGCACAATGTCC CGCTTGTATCAGCGCTCGTACCCGGTCGTCGACGCTGTCGCGCTGGCGTGCATTGTAGGGGCTTGGATACTGGTA CGTCTTCAGACCTGCCTCTCGATTGGCTCATACACTAATTAGAATATTTCATGTAGATTCAGATATTTGCGACCC CCTTTCATCGCATGTTCTCCCTCGACAATAGAAGTATCCAGTATCCCTTCGCTGTCGTGGAGAGAGTTCCCGTTG GTGAGATGCTGCAACCTGCCCCGTCACCGTCGACTTTCCTTGTTGCTTACTTTCGATTCATAGTTTGGTCTATCA TCTATGCTGGGGTCATTCCGTTCCTCGTCCTCCTCGCCTGGGCAGCCATGTTCCGTCCATACCCTCACAAGGTCC AAGTGACCTTGCTGGGCTTCCTCATCGCGCTTATGCTAACGAGCCTTATCACCGATATCATAAAGAACGCCGCTG GGCGACCTCGCCCTGATTTGATTTCTCGCTGTTTACCAAGGAAGGGTACCCCCAAGGATTTGTTGGTTTCATGGA CGGTGTGCACTCAAACCAACGAGCACATCCTACAAGAGGGATGGAGGAGTTTTCCCAGCGGCCACAGTAGCTTCT CATTTGGTGGACTCGGTTATATGTCATTGTAAGCTTCAATGCCGCGAGAGCTCAGAGAAAGCACGCTGATTTTTT TCCAGATTCCTCTCCGGTCAAATGCACGTCTTCAGACCGAGGACCGACCTCTGTCGCTGCCTTGTGGCTTTTGTT CCGCTCCTCGGCGCTCTGTTAATTGCCATTTCTCGTCTGGACGACTACCGCCACGATGTGTACGATGTTACTTGT GGATCGCTGCTTGGGTTGACGGTAGCTTATTTCTCGTACCGACGATATTATCCGGCCCTTCGGTCAATCAAGTGC GACTGCCCCTATGGCAGAGACGATATCATCGGCCCAGATGGATTCTCCAAACTGCCTGGTGATGAGGAACAGCAA CTGCCGGGCTCAGCATCTGTTGCGCGTCAATGGGATGCTCGGGAATCCTATCAACTTGCGGAGTCTGCATCCTCT TAA |