© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g6220.t1 |
| Gene name | |
| Location | scaffold_045:253928..254456 |
| Strand | + |
| Gene length (bp) | 528 |
| Transcript length (bp) | 267 |
| Coding sequence length (bp) | 267 |
| Protein length (aa) | 89 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05160 | DSS1_SEM1 | DSS1/SEM1 family | 2.5E-24 | 19 | 82 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0043248 | proteasome assembly | Yes |
| GO:0006406 | mRNA export from nucleus | Yes |
| GO:0008541 | proteasome regulatory particle, lid subcomplex | Yes |
| GO:0071702 | organic substance transport | No |
| GO:0051236 | establishment of RNA localization | No |
| GO:0015931 | nucleobase-containing compound transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0051168 | nuclear export | No |
| GO:0022607 | cellular component assembly | No |
| GO:0051028 | mRNA transport | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0006405 | RNA export from nucleus | No |
| GO:0046907 | intracellular transport | No |
| GO:0016043 | cellular component organization | No |
| GO:0051169 | nuclear transport | No |
| GO:0051179 | localization | No |
| GO:0051641 | cellular localization | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0032991 | protein-containing complex | No |
| GO:0050657 | nucleic acid transport | No |
| GO:0006810 | transport | No |
| GO:0006913 | nucleocytoplasmic transport | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0005575 | cellular_component | No |
| GO:0050658 | RNA transport | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g6220.t1 MSNPTATQDTKAEPTQQPQQQKPPVLEEDDEFEDFPVEDWPQEETEQGSAANGASAHLWEESWDDDDAAEDFSKQ LKEELKKVGASNQ* |
| Coding | >Ani_SJS72_1|g6220.t1 ATGTCGAATCCCACCGCGACCCAGGACACCAAGGCCGAGCCTACCCAACAGCCACAGCAACAGAAGCCCCCCGTG CTGGAAGAAGATGACGAGTTTGAGGACTTCCCCGTTGAAGACTGGCCTCAGGAGGAAACCGAACAAGGATCTGCT GCCAACGGCGCAAGCGCTCATTTGTGGGAGGAGAGCTGGGATGATGACGATGCGGCCGAGGACTTCTCGAAGCAA CTGAAAGAGGAGCTGAAGAAGGTCGGGGCGTCTAATCAATAG |
| Transcript | >Ani_SJS72_1|g6220.t1 ATGTCGAATCCCACCGCGACCCAGGACACCAAGGCCGAGCCTACCCAACAGCCACAGCAACAGAAGCCCCCCGTG CTGGAAGAAGATGACGAGTTTGAGGACTTCCCCGTTGAAGACTGGCCTCAGGAGGAAACCGAACAAGGATCTGCT GCCAACGGCGCAAGCGCTCATTTGTGGGAGGAGAGCTGGGATGATGACGATGCGGCCGAGGACTTCTCGAAGCAA CTGAAAGAGGAGCTGAAGAAGGTCGGGGCGTCTAATCAATAG |
| Gene | >Ani_SJS72_1|g6220.t1 ATGTCGAATCCCACCGCGACCCAGGACACCAAGGCCGAGCCTACCCAACAGCCACAGCAACAGAAGCCCCCCGTG CTGGAAGAAGATGACGAGTTTGAGGACTTCCCCGTTGAAGGTTAGCCACAAACCACACAGACCGCTGGTCTTTCC TGTCATGCAGAAGAGGGAGCTTCGCTCCGCCCAGACAGCCGGCAAAAATGATCTTACGGAGGACGGGTTGCGCTG ACCTCGGAGCTTTAATTGCAGACTGGCCTCAGGAGGAAACCGAACAAGGATCTGCTGCCAACGGCGCAAGCGCTC ATTTGTGGGAGGAGAGCTGGGATGATGACGATGCGGCCGAGGACTTCTCGAAGCAACTGAAGTACGTTTTCCCAA GCCAAGCCAAACCGAATCAAAACTCATCAGTCAATGCGATGAGCGCAATATGTTGCCATTGATCTACACCTCATC TAAAGCTCAAATTGGACTAACATGTTTGCTTCGAACTACAGAGAGGAGCTGAAGAAGGTCGGGGCGTCTAATCAA TAG |