© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g5985.t1 |
| Gene name | |
| Location | scaffold_043:47416..50273 |
| Strand | + |
| Gene length (bp) | 2857 |
| Transcript length (bp) | 2577 |
| Coding sequence length (bp) | 2577 |
| Protein length (aa) | 859 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF20428 | Sey1_3HB | Sey1 three-helix bundle domain | 6.3E-164 | 363 | 801 |
| PF05879 | RHD3_GTPase | Root hair defective 3 GTP-binding protein (RHD3) GTPase domain | 5.5E-125 | 59 | 316 |
| PF02263 | GBP | Guanylate-binding protein, N-terminal domain | 2.1E-07 | 55 | 195 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005525 | GTP binding | Yes |
| GO:0003924 | GTPase activity | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:0043167 | ion binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0036094 | small molecule binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 738 | 760 | 22 |
| 2 | 767 | 789 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g5985.t1 MATNGHFAAIGNGSSDKTAYEHGVQVIDENKEFNANLSKYLTLEDVTPAGFNYHLISVFGSQSTGKSTLLNHLFG TQFSVMSELERRQTTKGIWMSKNKNGGDSSMADNILVMDVEGTDGRERGEDQDFERKSALFALATSEVLIVNIWE HQVGLYQGANMGLLKTVFEVNMQLFLKDRATSHRSLLFFVIRDFVGNTPLQNLQRTLMEDMSRLWDSISKPAGLE HSSVHDYFDFQFYGLPHKSYQPEQFVAETKKLSLRFREGQKDPSLDARKGEFSDGGVFLPEYHRRIPADGFSHYA EGIWDQIVNNKDLDLPTQQELLAQFRCDEILREVMVAFDEAIVPFEDKQSQAARLGEPEILGGLGAAMRASRSKA FKSFETEASRYHKGVYQRKRAELESKIDTRLKALFQGQLDATHKSGITEFSEAVSGAVKAGQKKGTGYDFAEIVN EEVTKAVQKFKEVAHETAVEGATWSDSQQQLTLYEKELAEVSARLRREEMRRLASRVERWVQSRLGESVGLEFNA LGSGRAGGGAPEEGEKPTEKKFWDRVWNVFVETVLDAERRFTDRASSFDASLEEVDVGLWRLRRKSWGVLRAKID EEMVEGNLLLKLRENFEDKFRYDDAGVPRIWRPTDDIEGIYTRARESTLTLIPLLSRFRLAETSAPPPLDRWVGH TPSSATAADEEDLPPIGGVDEEEGKSLEEEMTILSESKRQELTVRFKKAADGVYVEAKRSAIGGMTQVPLYFYGI LLALGWNEIVAVLRNPAYFFLLFVCLVAGYVTYQLNLWGPIMKMTEAASNQALVEGKKRLREFLESSDTGRQAIA MSTPGGAGRGEQVEMSRLNKQGKTTAEDEDGDL* |
| Coding | >Ani_SJS72_1|g5985.t1 ATGGCAACCAATGGCCATTTTGCCGCCATTGGCAACGGCAGCAGCGACAAGACAGCATATGAGCACGGGGTGCAG GTCATCGACGAAAATAAGGAGTTCAATGCGAATCTGTCCAAGTATCTTACCTTAGAGGATGTCACACCAGCCGGC TTCAATTATCACCTCATATCCGTCTTCGGCTCCCAGTCGACGGGAAAGTCGACCTTGCTCAACCACCTTTTCGGC ACCCAGTTCTCCGTAATGTCAGAGTTGGAACGTCGTCAAACTACCAAGGGTATCTGGATGTCCAAAAACAAGAAT GGCGGCGACTCATCAATGGCCGACAACATCCTGGTTATGGATGTTGAGGGTACTGATGGTCGCGAACGTGGAGAG GACCAGGACTTTGAGCGCAAAAGCGCCCTGTTTGCGCTTGCGACGAGTGAGGTCCTCATTGTCAATATCTGGGAG CATCAGGTTGGATTGTATCAGGGTGCCAACATGGGCTTGTTGAAGACCGTTTTTGAAGTTAACATGCAGCTTTTC CTGAAAGATAGGGCTACCAGCCACCGTTCTCTTCTCTTCTTCGTCATTCGTGACTTTGTCGGCAACACGCCTCTC CAGAACCTGCAGCGGACACTGATGGAGGATATGTCGCGCCTCTGGGACTCGATCTCTAAGCCTGCCGGCTTGGAA CACTCTTCAGTGCATGATTACTTCGACTTTCAATTCTACGGTCTCCCACACAAGAGCTACCAGCCAGAACAGTTT GTTGCGGAGACAAAGAAGCTGAGCCTGCGTTTCCGTGAAGGACAGAAGGACCCTAGTTTGGATGCGCGCAAGGGC GAGTTTTCCGATGGAGGCGTCTTCCTCCCCGAGTACCACCGTCGCATTCCCGCGGACGGCTTTTCCCACTATGCG GAGGGAATTTGGGACCAGATTGTGAACAATAAGGATCTCGATCTCCCCACTCAGCAGGAACTGCTTGCGCAGTTC CGCTGTGATGAAATTCTGCGGGAGGTCATGGTTGCATTTGACGAGGCGATCGTTCCATTTGAGGATAAGCAGTCG CAGGCGGCTCGCCTCGGGGAACCGGAGATCCTCGGCGGCCTGGGAGCGGCGATGCGGGCCTCGCGGTCCAAGGCC TTCAAGAGCTTCGAAACGGAAGCCAGTCGGTACCACAAAGGAGTTTACCAGCGCAAACGCGCCGAGCTCGAGAGC AAGATCGATACTCGTTTGAAGGCTCTATTCCAGGGCCAGCTGGATGCGACCCATAAGTCTGGTATCACCGAGTTC AGCGAGGCTGTGTCGGGTGCTGTCAAGGCCGGACAGAAGAAGGGCACTGGCTATGACTTCGCCGAAATCGTGAAC GAGGAAGTGACCAAGGCAGTGCAGAAGTTCAAGGAGGTTGCGCACGAAACGGCCGTGGAGGGCGCCACCTGGAGT GACTCTCAACAGCAGCTGACACTGTATGAGAAGGAACTGGCGGAAGTGAGCGCACGGCTGCGTCGTGAGGAGATG CGACGACTGGCCAGCCGGGTCGAGCGTTGGGTGCAGTCTCGCCTGGGCGAATCGGTTGGTCTGGAGTTCAATGCT CTTGGGTCCGGACGGGCCGGAGGTGGCGCTCCGGAAGAGGGAGAGAAGCCTACGGAGAAGAAATTTTGGGACCGT GTATGGAATGTGTTTGTGGAGACCGTGCTCGATGCCGAGCGCAGATTCACCGACCGCGCCAGTAGCTTCGACGCC AGCCTAGAGGAGGTGGATGTTGGGCTGTGGCGGTTGCGCCGGAAGTCTTGGGGTGTTTTGCGCGCAAAGATTGAC GAAGAGATGGTTGAGGGCAATTTGCTGCTGAAGCTGCGCGAGAACTTTGAGGACAAGTTCCGCTACGACGACGCT GGTGTTCCCCGAATCTGGCGGCCAACCGATGATATTGAGGGCATCTACACCCGTGCGCGCGAGTCGACACTAACC CTGATTCCCCTTCTATCACGGTTCCGACTGGCGGAGACCTCTGCACCACCGCCACTGGATCGCTGGGTTGGGCAC ACGCCCAGCTCTGCGACAGCGGCCGATGAGGAGGACCTGCCGCCGATCGGTGGAGTAGACGAAGAGGAGGGCAAG AGCTTGGAAGAGGAGATGACGATTCTCAGCGAGTCTAAGCGGCAGGAGCTGACGGTGCGGTTCAAGAAGGCTGCG GATGGAGTGTACGTGGAGGCCAAACGCAGCGCCATCGGCGGCATGACGCAGGTGCCCCTGTACTTTTATGGCATT CTTCTGGCGCTTGGTTGGAACGAGATTGTGGCTGTCCTTCGTAACCCTGCCTACTTCTTCCTCTTGTTTGTGTGC CTCGTTGCAGGGTACGTGACGTACCAGCTCAATCTGTGGGGACCGATCATGAAGATGACGGAGGCTGCATCGAAC CAGGCACTCGTGGAGGGCAAGAAGCGACTGCGCGAGTTTCTCGAGTCTTCGGATACGGGACGACAGGCAATTGCG ATGTCGACACCCGGCGGTGCTGGCCGGGGGGAGCAGGTGGAGATGTCGCGCCTCAACAAGCAGGGAAAGACAACG GCCGAGGATGAGGACGGTGACTTGTAA |
| Transcript | >Ani_SJS72_1|g5985.t1 ATGGCAACCAATGGCCATTTTGCCGCCATTGGCAACGGCAGCAGCGACAAGACAGCATATGAGCACGGGGTGCAG GTCATCGACGAAAATAAGGAGTTCAATGCGAATCTGTCCAAGTATCTTACCTTAGAGGATGTCACACCAGCCGGC TTCAATTATCACCTCATATCCGTCTTCGGCTCCCAGTCGACGGGAAAGTCGACCTTGCTCAACCACCTTTTCGGC ACCCAGTTCTCCGTAATGTCAGAGTTGGAACGTCGTCAAACTACCAAGGGTATCTGGATGTCCAAAAACAAGAAT GGCGGCGACTCATCAATGGCCGACAACATCCTGGTTATGGATGTTGAGGGTACTGATGGTCGCGAACGTGGAGAG GACCAGGACTTTGAGCGCAAAAGCGCCCTGTTTGCGCTTGCGACGAGTGAGGTCCTCATTGTCAATATCTGGGAG CATCAGGTTGGATTGTATCAGGGTGCCAACATGGGCTTGTTGAAGACCGTTTTTGAAGTTAACATGCAGCTTTTC CTGAAAGATAGGGCTACCAGCCACCGTTCTCTTCTCTTCTTCGTCATTCGTGACTTTGTCGGCAACACGCCTCTC CAGAACCTGCAGCGGACACTGATGGAGGATATGTCGCGCCTCTGGGACTCGATCTCTAAGCCTGCCGGCTTGGAA CACTCTTCAGTGCATGATTACTTCGACTTTCAATTCTACGGTCTCCCACACAAGAGCTACCAGCCAGAACAGTTT GTTGCGGAGACAAAGAAGCTGAGCCTGCGTTTCCGTGAAGGACAGAAGGACCCTAGTTTGGATGCGCGCAAGGGC GAGTTTTCCGATGGAGGCGTCTTCCTCCCCGAGTACCACCGTCGCATTCCCGCGGACGGCTTTTCCCACTATGCG GAGGGAATTTGGGACCAGATTGTGAACAATAAGGATCTCGATCTCCCCACTCAGCAGGAACTGCTTGCGCAGTTC CGCTGTGATGAAATTCTGCGGGAGGTCATGGTTGCATTTGACGAGGCGATCGTTCCATTTGAGGATAAGCAGTCG CAGGCGGCTCGCCTCGGGGAACCGGAGATCCTCGGCGGCCTGGGAGCGGCGATGCGGGCCTCGCGGTCCAAGGCC TTCAAGAGCTTCGAAACGGAAGCCAGTCGGTACCACAAAGGAGTTTACCAGCGCAAACGCGCCGAGCTCGAGAGC AAGATCGATACTCGTTTGAAGGCTCTATTCCAGGGCCAGCTGGATGCGACCCATAAGTCTGGTATCACCGAGTTC AGCGAGGCTGTGTCGGGTGCTGTCAAGGCCGGACAGAAGAAGGGCACTGGCTATGACTTCGCCGAAATCGTGAAC GAGGAAGTGACCAAGGCAGTGCAGAAGTTCAAGGAGGTTGCGCACGAAACGGCCGTGGAGGGCGCCACCTGGAGT GACTCTCAACAGCAGCTGACACTGTATGAGAAGGAACTGGCGGAAGTGAGCGCACGGCTGCGTCGTGAGGAGATG CGACGACTGGCCAGCCGGGTCGAGCGTTGGGTGCAGTCTCGCCTGGGCGAATCGGTTGGTCTGGAGTTCAATGCT CTTGGGTCCGGACGGGCCGGAGGTGGCGCTCCGGAAGAGGGAGAGAAGCCTACGGAGAAGAAATTTTGGGACCGT GTATGGAATGTGTTTGTGGAGACCGTGCTCGATGCCGAGCGCAGATTCACCGACCGCGCCAGTAGCTTCGACGCC AGCCTAGAGGAGGTGGATGTTGGGCTGTGGCGGTTGCGCCGGAAGTCTTGGGGTGTTTTGCGCGCAAAGATTGAC GAAGAGATGGTTGAGGGCAATTTGCTGCTGAAGCTGCGCGAGAACTTTGAGGACAAGTTCCGCTACGACGACGCT GGTGTTCCCCGAATCTGGCGGCCAACCGATGATATTGAGGGCATCTACACCCGTGCGCGCGAGTCGACACTAACC CTGATTCCCCTTCTATCACGGTTCCGACTGGCGGAGACCTCTGCACCACCGCCACTGGATCGCTGGGTTGGGCAC ACGCCCAGCTCTGCGACAGCGGCCGATGAGGAGGACCTGCCGCCGATCGGTGGAGTAGACGAAGAGGAGGGCAAG AGCTTGGAAGAGGAGATGACGATTCTCAGCGAGTCTAAGCGGCAGGAGCTGACGGTGCGGTTCAAGAAGGCTGCG GATGGAGTGTACGTGGAGGCCAAACGCAGCGCCATCGGCGGCATGACGCAGGTGCCCCTGTACTTTTATGGCATT CTTCTGGCGCTTGGTTGGAACGAGATTGTGGCTGTCCTTCGTAACCCTGCCTACTTCTTCCTCTTGTTTGTGTGC CTCGTTGCAGGGTACGTGACGTACCAGCTCAATCTGTGGGGACCGATCATGAAGATGACGGAGGCTGCATCGAAC CAGGCACTCGTGGAGGGCAAGAAGCGACTGCGCGAGTTTCTCGAGTCTTCGGATACGGGACGACAGGCAATTGCG ATGTCGACACCCGGCGGTGCTGGCCGGGGGGAGCAGGTGGAGATGTCGCGCCTCAACAAGCAGGGAAAGACAACG GCCGAGGATGAGGACGGTGACTTGTAA |
| Gene | >Ani_SJS72_1|g5985.t1 ATGGCAACCAATGGCCATTTTGCCGCCATTGGCAACGGCAGCAGCGACAAGACAGCATATGAGCACGGGGTGCAG GTCATCGACGAAAATAAGGAGTTCAAGTAGGTTCTTCCGGTTGTCTATGAGTCTCAATACAAAGGTGGTTGTTTG TGACGTTGGGGTCAAGTCTCAGGGAGTTTACGCAGAATGCGACTCTCCGTCATCCGCATCACCTGTTCAGGGGCT TTTGAACGGCGCATCAGCTAACAAACACAATTACTCTAGTGCGAATCTGTCCAAGTATCTTACCTTAGAGGATGT CACACCAGCCGGCTTCAATTATCACCTCATATCCGTCTTCGGCTCCCAGTCGACGGGAAAGTCGACCTTGCTCAA CCACCTTTTCGGCACCCAGTTCTCCGTAATGTCAGAGTTGGAACGTCGTCAAACTACCAAGGGTATCTGGATGTC CAAAAACAAGAATGGCGGCGACTCATCAATGGCCGACAACATCCTGGTTATGGATGTTGAGGGTACTGATGGTCG CGAACGTGGAGAGGACCAGGACTTTGAGCGCAAAAGCGCCCTGTTTGCGCTTGCGACGAGTGAGGTCCTCATTGT CAATATCTGGGAGCATCAGGTTGGATTGTATCAGGGTGCCAACATGGGCTTGTTGAAGACCGTTTTTGAAGTTAA CATGCAGCTTTTCCTGAAAGATAGGGCGTACGTTTCGCATATTGTTCTACGTGTTGCTCATGCTTTTTGCTGACC CTTAGCGTATAGTACCAGCCACCGTTCTCTTCTCTTCTTCGTCATTCGTGACTTTGTCGGCAACACGCCTCTCCA GAACCTGCAGCGGACACTGATGGAGGATATGTCGCGCCTCTGGGACTCGATCTCTAAGCCTGCCGGCTTGGAACA CTCTTCAGTGCATGATTACTTCGACTTTCAATTCTACGGTCTCCCACACAAGAGCTACCAGCCAGAACAGTTTGT TGCGGAGACAAAGAAGCTGAGCCTGCGTTTCCGTGAAGGACAGAAGGACCCTAGTTTGGATGCGCGCAAGGGCGA GTTTTCCGATGGAGGCGTCTTCCTCCCCGAGTACCACCGTCGCATTCCCGCGGACGGCTTTTCCCACTATGCGGA GGGAATTTGGGACCAGATTGTGAACAATAAGGATCTCGATCTCCCCACTCAGCAGGAACTGCTTGCGCAGTTCCG CTGTGATGAAATTCTGCGGGAGGTCATGGTTGCATTTGACGAGGCGATCGTTCCATTTGAGGATAAGCAGTCGCA GGCGGCTCGCCTCGGGGAACCGGAGATCCTCGGCGGCCTGGGAGCGGCGATGCGGGCCTCGCGGTCCAAGGCCTT CAAGAGCTTCGAAACGGAAGCCAGTCGGTACCACAAAGGAGTTTACCAGCGCAAACGCGCCGAGCTCGAGAGCAA GATCGATACTCGTTTGAAGGCTCTATTCCAGGGCCAGCTGGATGCGACCCATAAGTCTGGTATCACCGAGTTCAG CGAGGCTGTGTCGGGTGCTGTCAAGGCCGGACAGAAGAAGGGCACTGGCTATGACTTCGCCGAAATCGTGAACGA GGAAGTGACCAAGGCAGTGCAGAAGTTCAAGGAGGTTGCGCACGAAACGGCCGTGGAGGGCGCCACCTGGAGTGA CTCTCAACAGCAGCTGACACTGTATGAGAAGGAACTGGCGGAAGTGAGCGCACGGCTGCGTCGTGAGGAGATGCG ACGACTGGCCAGCCGGGTCGAGCGTTGGGTGCAGTCTCGCCTGGGCGAATCGGTTGGTCTGGAGTTCAATGCTCT TGGGTCCGGACGGGCCGGAGGTGGCGCTCCGGAAGAGGGAGAGAAGCCTACGGAGAAGAAATTTTGGGACCGTGT ATGGAATGTGTTTGTGGAGACCGTGCTCGATGCCGAGCGCAGATTCACCGACCGCGCCAGTAGCTTCGACGCCAG CCTAGAGGAGGTGGATGTTGGGCTGTGGCGGTTGCGCCGGAAGTCTTGGGGTGTTTTGCGCGCAAAGATTGACGA AGAGATGGTTGAGGGCAATTTGCTGCTGAAGCTGCGCGAGAACTTTGAGGACAAGTTCCGCTACGACGACGCTGG TGTTCCCCGAATCTGGCGGCCAACCGATGATATTGAGGGCATCTACACCCGTGCGCGCGAGTCGACACTAACCCT GATTCCCCTTCTATCACGGTTCCGACTGGCGGAGACCTCTGCACCACCGCCACTGGATCGCTGGGTTGGGCACAC GCCCAGCTCTGCGACAGCGGCCGATGAGGAGGACCTGCCGCCGATCGGTGGAGTAGACGAAGAGGAGGGCAAGAG CTTGGAAGAGGAGATGACGATTCTCAGCGAGTCTAAGCGGCAGGAGCTGACGGTGCGGTTCAAGAAGGCTGCGGA TGGAGTGTACGTGGAGGCCAAACGCAGCGCCATCGGCGGCATGACGCAGGTGCCCCTGTACTTTTATGGCATTCT TCTGGCGCTTGGTTGGAACGAGATTGTGGCTGGTAAGTTTCGCTCTATGAATTTCGGATTCTGGGTTGATCATGG CTAACTGTGCACAGTCCTTCGTAACCCTGCCTACTTCTTCCTCTTGTTTGTGTGCCTCGTTGCAGGGTACGTGAC GTACCAGCTCAATCTGTGGGGACCGATCATGAAGATGACGGAGGCTGCATCGAACCAGGCACTCGTGGAGGGCAA GAAGCGACTGCGCGAGTTTCTCGAGTCTTCGGATACGGGACGACAGGCAATTGCGATGTCGACACCCGGCGGTGC TGGCCGGGGGGAGCAGGTGGAGATGTCGCGCCTCAACAAGCAGGGAAAGACAACGGCCGAGGATGAGGACGGTGA CTTGTAA |