© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g5944.t1 |
| Gene name | |
| Location | scaffold_042:220432..221637 |
| Strand | - |
| Gene length (bp) | 1205 |
| Transcript length (bp) | 1146 |
| Coding sequence length (bp) | 1146 |
| Protein length (aa) | 382 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06330 | TRI5 | Trichodiene synthase (TRI5) | 3.4E-35 | 116 | 361 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016838 | carbon-oxygen lyase activity, acting on phosphates | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0016835 | carbon-oxygen lyase activity | No |
| GO:0016829 | lyase activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 43 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g5944.t1 MDSVTNLLPSILNAPQSMDWTGMNFLLFHLILFVLMTATAALWRLATHFAVPVSGKISPASTISKRDYEEVVNGF LRDISFRPPEIKFDVSLKTRVVSRLEAYGISRRFIALIEPCITTATKISSCSYPFTSPEVLEAIALYATYVISID DITNEILPDLECYGSQLVLGQSQRHELLRGFTKFLGDQPRVFGAFGGDMIIKGTVEFIASAVIEQNQDAFQLSRD SSDYLIYFRAKTGVAEPFAFFCFPEDINPEDRDLQKYVSAIPSIMLFLGYVNDLLSFYKEELKEEDSPGFVQSYA KVHNSTALHALQQLRHETIKEVRKIRSMLSDDVQMAERINQFIYGYIFYHLCTGRYRLTELNIPAAHDARKRIQA LTDVRL* |
| Coding | >Ani_SJS72_1|g5944.t1 ATGGACTCCGTTACAAACCTTCTTCCGTCTATTCTGAATGCTCCTCAAAGCATGGATTGGACTGGGATGAACTTC CTACTCTTCCATCTGATTTTGTTCGTTCTCATGACTGCTACTGCTGCTCTCTGGAGATTAGCTACCCACTTCGCC GTCCCCGTTTCTGGAAAGATATCCCCTGCAAGTACCATATCCAAAAGGGATTACGAAGAAGTTGTGAATGGCTTC CTACGAGACATTTCATTCCGACCCCCAGAAATCAAATTTGATGTGAGTCTGAAGACTCGTGTTGTAAGCCGCCTG GAGGCTTATGGCATTTCACGAAGGTTCATTGCTCTCATTGAACCGTGCATTACCACAGCGACGAAAATTTCCAGC TGTTCCTATCCATTTACATCTCCCGAAGTTCTCGAGGCTATTGCCCTCTATGCTACATATGTTATATCGATCGAT GACATTACAAACGAAATCCTACCTGACCTTGAATGTTATGGGTCTCAATTGGTCCTTGGTCAATCTCAGAGACAC GAACTTCTTCGCGGATTCACAAAATTCCTCGGGGACCAGCCTCGTGTGTTCGGAGCCTTTGGGGGCGACATGATT ATCAAGGGCACAGTGGAGTTTATCGCTTCGGCCGTAATTGAACAAAACCAGGATGCTTTTCAACTATCGCGTGAT TCGTCGGACTATTTGATTTACTTCAGGGCAAAGACAGGGGTTGCTGAACCTTTTGCCTTCTTTTGTTTTCCAGAA GACATCAACCCTGAAGACCGAGACTTACAGAAATACGTCTCGGCCATTCCCAGTATTATGCTATTTCTGGGATAC GTCAATGACCTCTTGTCCTTCTATAAGGAGGAGCTCAAAGAGGAGGATTCTCCAGGCTTCGTCCAAAGCTATGCC AAGGTTCATAATTCTACTGCGCTTCATGCACTTCAGCAACTTCGGCATGAGACGATAAAGGAAGTACGAAAGATC CGGAGTATGCTATCCGATGATGTCCAAATGGCTGAGCGTATCAATCAGTTTATTTATGGGTATATATTCTATCAT TTGTGCACGGGAAGATACAGGTTGACCGAGTTGAATATTCCTGCTGCTCATGACGCAAGAAAGCGGATTCAAGCG TTGACTGACGTGCGACTGTAG |
| Transcript | >Ani_SJS72_1|g5944.t1 ATGGACTCCGTTACAAACCTTCTTCCGTCTATTCTGAATGCTCCTCAAAGCATGGATTGGACTGGGATGAACTTC CTACTCTTCCATCTGATTTTGTTCGTTCTCATGACTGCTACTGCTGCTCTCTGGAGATTAGCTACCCACTTCGCC GTCCCCGTTTCTGGAAAGATATCCCCTGCAAGTACCATATCCAAAAGGGATTACGAAGAAGTTGTGAATGGCTTC CTACGAGACATTTCATTCCGACCCCCAGAAATCAAATTTGATGTGAGTCTGAAGACTCGTGTTGTAAGCCGCCTG GAGGCTTATGGCATTTCACGAAGGTTCATTGCTCTCATTGAACCGTGCATTACCACAGCGACGAAAATTTCCAGC TGTTCCTATCCATTTACATCTCCCGAAGTTCTCGAGGCTATTGCCCTCTATGCTACATATGTTATATCGATCGAT GACATTACAAACGAAATCCTACCTGACCTTGAATGTTATGGGTCTCAATTGGTCCTTGGTCAATCTCAGAGACAC GAACTTCTTCGCGGATTCACAAAATTCCTCGGGGACCAGCCTCGTGTGTTCGGAGCCTTTGGGGGCGACATGATT ATCAAGGGCACAGTGGAGTTTATCGCTTCGGCCGTAATTGAACAAAACCAGGATGCTTTTCAACTATCGCGTGAT TCGTCGGACTATTTGATTTACTTCAGGGCAAAGACAGGGGTTGCTGAACCTTTTGCCTTCTTTTGTTTTCCAGAA GACATCAACCCTGAAGACCGAGACTTACAGAAATACGTCTCGGCCATTCCCAGTATTATGCTATTTCTGGGATAC GTCAATGACCTCTTGTCCTTCTATAAGGAGGAGCTCAAAGAGGAGGATTCTCCAGGCTTCGTCCAAAGCTATGCC AAGGTTCATAATTCTACTGCGCTTCATGCACTTCAGCAACTTCGGCATGAGACGATAAAGGAAGTACGAAAGATC CGGAGTATGCTATCCGATGATGTCCAAATGGCTGAGCGTATCAATCAGTTTATTTATGGGTATATATTCTATCAT TTGTGCACGGGAAGATACAGGTTGACCGAGTTGAATATTCCTGCTGCTCATGACGCAAGAAAGCGGATTCAAGCG TTGACTGACGTGCGACTGTAG |
| Gene | >Ani_SJS72_1|g5944.t1 ATGGTGAGCAGAGAGAGCCCATTGTTTATGTCAATATCAGTGTATGACTGATTCGAAAACAGGACTCCGTTACAA ACCTTCTTCCGTCTATTCTGAATGCTCCTCAAAGCATGGATTGGACTGGGATGAACTTCCTACTCTTCCATCTGA TTTTGTTCGTTCTCATGACTGCTACTGCTGCTCTCTGGAGATTAGCTACCCACTTCGCCGTCCCCGTTTCTGGAA AGATATCCCCTGCAAGTACCATATCCAAAAGGGATTACGAAGAAGTTGTGAATGGCTTCCTACGAGACATTTCAT TCCGACCCCCAGAAATCAAATTTGATGTGAGTCTGAAGACTCGTGTTGTAAGCCGCCTGGAGGCTTATGGCATTT CACGAAGGTTCATTGCTCTCATTGAACCGTGCATTACCACAGCGACGAAAATTTCCAGCTGTTCCTATCCATTTA CATCTCCCGAAGTTCTCGAGGCTATTGCCCTCTATGCTACATATGTTATATCGATCGATGACATTACAAACGAAA TCCTACCTGACCTTGAATGTTATGGGTCTCAATTGGTCCTTGGTCAATCTCAGAGACACGAACTTCTTCGCGGAT TCACAAAATTCCTCGGGGACCAGCCTCGTGTGTTCGGAGCCTTTGGGGGCGACATGATTATCAAGGGCACAGTGG AGTTTATCGCTTCGGCCGTAATTGAACAAAACCAGGATGCTTTTCAACTATCGCGTGATTCGTCGGACTATTTGA TTTACTTCAGGGCAAAGACAGGGGTTGCTGAACCTTTTGCCTTCTTTTGTTTTCCAGAAGACATCAACCCTGAAG ACCGAGACTTACAGAAATACGTCTCGGCCATTCCCAGTATTATGCTATTTCTGGGATACGTCAATGACCTCTTGT CCTTCTATAAGGAGGAGCTCAAAGAGGAGGATTCTCCAGGCTTCGTCCAAAGCTATGCCAAGGTTCATAATTCTA CTGCGCTTCATGCACTTCAGCAACTTCGGCATGAGACGATAAAGGAAGTACGAAAGATCCGGAGTATGCTATCCG ATGATGTCCAAATGGCTGAGCGTATCAATCAGTTTATTTATGGGTATATATTCTATCATTTGTGCACGGGAAGAT ACAGGTTGACCGAGTTGAATATTCCTGCTGCTCATGACGCAAGAAAGCGGATTCAAGCGTTGACTGACGTGCGAC TGTAG |