© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g5876.t1 |
| Gene name | |
| Location | scaffold_042:29211..30242 |
| Strand | + |
| Gene length (bp) | 1031 |
| Transcript length (bp) | 927 |
| Coding sequence length (bp) | 927 |
| Protein length (aa) | 309 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03595 | SLAC1 | Voltage-dependent anion channel | 1.7E-41 | 1 | 279 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 40 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 17 | 36 | 19 |
| 2 | 51 | 73 | 22 |
| 3 | 82 | 104 | 22 |
| 4 | 109 | 128 | 19 |
| 5 | 148 | 170 | 22 |
| 6 | 193 | 215 | 22 |
| 7 | 228 | 245 | 17 |
| 8 | 255 | 277 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g5876.t1 MYPQNVARALRTSMVEVSCLASVSITFTTIIQMIALAVAQQWGAGWPMASYVLWWINTAMALFAVMGIPYIFVKL QAPGIKAIVPAVLLPLISALTSAAGGGVISYLEVGVGIPMAMAFADVFIARLFEREFMPMDQAYQDMILCGPFGQ GSFALLILGQVVRSGAFAAYNRGSFLTAEAAIPIGFASQFAGLLSWGYGTFWWGYAIISILHTAFKQPGGWRRMQ YSLSAWSLVFPWGVYANGAVQLGKVMDSPAFKVWSTALTLMLIIIWIVNHIFTIRGLITGRILSLQHGWRVGQYQ AGEVDKQV* |
| Coding | >Ani_SJS72_1|g5876.t1 ATGTATCCACAGAACGTCGCACGAGCCCTCCGGACAAGCATGGTAGAGGTATCATGCCTTGCTAGTGTCTCTATA ACGTTCACGACTATCATTCAGATGATCGCCTTAGCCGTTGCTCAGCAATGGGGCGCAGGATGGCCAATGGCCTCA TACGTTCTGTGGTGGATCAATACGGCTATGGCTTTGTTTGCTGTTATGGGAATACCGTACATTTTCGTGAAGCTA CAAGCTCCCGGGATCAAAGCTATTGTACCTGCCGTTCTGCTTCCATTGATATCTGCGTTGACCTCCGCCGCGGGC GGAGGTGTCATATCATACCTTGAAGTCGGCGTCGGAATCCCCATGGCCATGGCCTTTGCCGATGTCTTCATTGCG CGTCTCTTTGAGCGCGAATTCATGCCCATGGATCAAGCCTACCAAGATATGATTCTCTGTGGTCCGTTTGGACAG GGCAGCTTTGCGCTGCTCATTCTCGGGCAGGTTGTACGATCTGGGGCATTTGCTGCGTACAATCGGGGGTCATTC CTGACCGCTGAAGCAGCGATCCCAATTGGCTTTGCCAGTCAATTTGCCGGTTTGCTCTCTTGGGGCTACGGGACA TTTTGGTGGGGCTACGCCATCATAAGTATTTTGCATACTGCTTTCAAACAACCCGGAGGCTGGCGGAGGATGCAG TATTCACTTTCAGCCTGGTCTCTGGTCTTTCCATGGGGTGTATATGCCAATGGCGCCGTCCAGCTTGGGAAAGTC ATGGACTCCCCCGCATTCAAAGTGTGGTCCACTGCACTAACCCTCATGCTTATCATTATCTGGATTGTGAATCAC ATATTCACCATTAGAGGCTTAATTACGGGGCGAATCCTGTCACTTCAGCATGGGTGGCGGGTCGGTCAATACCAA GCCGGAGAAGTCGATAAGCAGGTCTAA |
| Transcript | >Ani_SJS72_1|g5876.t1 ATGTATCCACAGAACGTCGCACGAGCCCTCCGGACAAGCATGGTAGAGGTATCATGCCTTGCTAGTGTCTCTATA ACGTTCACGACTATCATTCAGATGATCGCCTTAGCCGTTGCTCAGCAATGGGGCGCAGGATGGCCAATGGCCTCA TACGTTCTGTGGTGGATCAATACGGCTATGGCTTTGTTTGCTGTTATGGGAATACCGTACATTTTCGTGAAGCTA CAAGCTCCCGGGATCAAAGCTATTGTACCTGCCGTTCTGCTTCCATTGATATCTGCGTTGACCTCCGCCGCGGGC GGAGGTGTCATATCATACCTTGAAGTCGGCGTCGGAATCCCCATGGCCATGGCCTTTGCCGATGTCTTCATTGCG CGTCTCTTTGAGCGCGAATTCATGCCCATGGATCAAGCCTACCAAGATATGATTCTCTGTGGTCCGTTTGGACAG GGCAGCTTTGCGCTGCTCATTCTCGGGCAGGTTGTACGATCTGGGGCATTTGCTGCGTACAATCGGGGGTCATTC CTGACCGCTGAAGCAGCGATCCCAATTGGCTTTGCCAGTCAATTTGCCGGTTTGCTCTCTTGGGGCTACGGGACA TTTTGGTGGGGCTACGCCATCATAAGTATTTTGCATACTGCTTTCAAACAACCCGGAGGCTGGCGGAGGATGCAG TATTCACTTTCAGCCTGGTCTCTGGTCTTTCCATGGGGTGTATATGCCAATGGCGCCGTCCAGCTTGGGAAAGTC ATGGACTCCCCCGCATTCAAAGTGTGGTCCACTGCACTAACCCTCATGCTTATCATTATCTGGATTGTGAATCAC ATATTCACCATTAGAGGCTTAATTACGGGGCGAATCCTGTCACTTCAGCATGGGTGGCGGGTCGGTCAATACCAA GCCGGAGAAGTCGATAAGCAGGTCTAA |
| Gene | >Ani_SJS72_1|g5876.t1 ATGTATCCACAGAACGTCGCACGAGCCCTCCGGACAAGCATGGTAGAGGTATCATGCCTTGCTAGTGTCTCTATA ACGTTCACGACTATCATTCAGATGATCGCCTTAGCCGTTGCTCAGCAATGGGGCGCAGGATGGCCAATGGCCTCA TACGTTCTGTGGTGGATCAATACGGCTATGGCTTTGTTTGCTGTTATGGGAATACCGTACATTTTCGTGAAGCTA CAAGCTCCCGGGATCAAAGCTATTGTACCTGCCGTTCTGCTTCCATTGATATCTGCGTTGACCTCCGCCGCGGGC GGAGGTGTCATATGTGAGTATAGTGGAATTGGTGCTCGACTGCAAGTCCCGGTTATCATTGTAGCATACCTTGAA GTCGGCGTCGGAATCCCCATGGCCATGGCCTTTGCCGATGTCTTCATTGCGCGTCTCTTTGAGCGCGAATTCATG CCCATGGATCAAGCCTACCAAGATATGATTCTCTGTGGTCCGTTTGGACAGGGCAGCTTTGCGCTGCTCATTCTC GGGCAGGTTGTACGATCTGGGGCATTTGCTGCGTACAATCGGGGGTCATTCCTGACCGCTGAAGCAGCGATCCCA ATTGGCTTTGCCAGTCAATTTGCCGGTTTGCTCTCTTGGGGCTACGGGACATTTTGGTGGGGCTACGCCATCATA AGTATTTTGCATACTGCTTTCAAACAACCCGGAGGCTGGCGGAGGATGCAGTATTCACTTTCAGCCTGGTCTCTG GTCTTTCCATGGGTGAGTGTATGCTCCTTAATTTTTGAGATTCATGATCTGACAGGATCTTGCAGGGTGTATATG CCAATGGCGCCGTCCAGCTTGGGAAAGTCATGGACTCCCCCGCATTCAAAGTGTGGTCCACTGCACTAACCCTCA TGCTTATCATTATCTGGATTGTGAATCACATATTCACCATTAGAGGCTTAATTACGGGGCGAATCCTGTCACTTC AGCATGGGTGGCGGGTCGGTCAATACCAAGCCGGAGAAGTCGATAAGCAGGTCTAA |