© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g5839.t1 |
| Gene name | |
| Location | scaffold_041:221345..222704 |
| Strand | + |
| Gene length (bp) | 1359 |
| Transcript length (bp) | 1146 |
| Coding sequence length (bp) | 1146 |
| Protein length (aa) | 382 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00892 | EamA | EamA-like transporter family | 1.7E-06 | 202 | 341 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 44 | 66 | 22 |
| 2 | 73 | 92 | 19 |
| 3 | 112 | 134 | 22 |
| 4 | 155 | 177 | 22 |
| 5 | 197 | 219 | 22 |
| 6 | 236 | 254 | 18 |
| 7 | 274 | 296 | 22 |
| 8 | 303 | 322 | 19 |
| 9 | 326 | 348 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g5839.t1 MAEGKKTDDYTIQMDSIDQGNKSFEAPPPPQPRSPPSGSLSNNPILPVLAYCGSSILMTVMNKYVLSGTDFNLNF FLLCIQSLVCIIAIQTCKSCGLITYRDFSADEARKWFPITLLLIGMIYTGSKALQFLSIPVYTIFKNLTIILIAY GEVLWFGGSVTGLTLFSFGLMVLSSIIAAWADIKHAVESNGDATAKVSTLNAGYIWMLVNCLCTSSYVLGMRKRI KLTNFKDFDTMFYNNLLSIPVLIVLSAFLEDWSSTNVNRNFPPMDRNSIVFAMILSGLSSVFISYTSAWCVRVTS STTYSMVGALNKLPIAISGLIFFDAPVTFPSVSAIVVGFVSGIVYAVAKIKQNAKPRTGVLPTANPPVSASSQSM RDSLRS* |
| Coding | >Ani_SJS72_1|g5839.t1 ATGGCTGAAGGCAAGAAGACCGACGACTACACGATCCAGATGGATTCGATAGACCAGGGCAACAAGAGCTTCGAG GCGCCGCCGCCGCCTCAGCCCAGGAGTCCGCCGTCGGGCTCGCTGTCCAACAACCCCATCTTGCCCGTCCTGGCC TATTGTGGATCCTCGATTTTGATGACCGTCATGAACAAATATGTCTTGTCCGGCACTGACTTCAACCTCAACTTT TTCCTCCTCTGCATCCAGTCTCTCGTTTGTATCATCGCTATCCAGACCTGTAAATCATGTGGTTTGATCACTTAT CGCGACTTCAGCGCGGACGAGGCCAGAAAGTGGTTCCCCATCACTCTGCTCTTGATCGGCATGATCTACACGGGC TCTAAGGCGCTTCAGTTCCTCTCGATTCCCGTCTACACCATCTTCAAGAACTTGACCATCATCCTTATCGCTTAC GGAGAGGTGCTGTGGTTTGGTGGCTCCGTCACCGGTCTTACCCTGTTCTCTTTCGGATTGATGGTCCTGAGCTCT ATCATTGCCGCCTGGGCTGACATCAAGCACGCTGTCGAGAGCAATGGCGATGCGACCGCCAAGGTGTCTACTTTG AATGCAGGCTATATCTGGATGCTGGTCAACTGCCTCTGCACGTCGTCCTATGTTTTGGGCATGCGCAAGCGGATC AAGCTGACCAACTTCAAGGACTTTGACACCATGTTCTACAACAACCTTCTGTCGATTCCCGTCCTGATCGTTCTG TCCGCTTTCTTGGAAGACTGGTCATCCACCAACGTCAACCGCAACTTCCCTCCCATGGACCGCAACAGCATCGTT TTCGCCATGATCCTCTCCGGCTTGTCGTCTGTGTTTATTTCCTATACCTCCGCCTGGTGCGTTCGCGTCACTTCT TCGACCACTTACTCCATGGTTGGAGCTCTGAACAAGCTTCCCATTGCTATCTCTGGACTTATTTTCTTCGATGCC CCTGTTACCTTCCCCAGCGTTTCGGCTATCGTCGTTGGCTTTGTTAGCGGTATCGTCTACGCCGTTGCTAAGATC AAGCAAAACGCTAAGCCAAGGACTGGTGTCTTGCCGACCGCCAACCCCCCGGTCAGCGCCAGCAGCCAGAGTATG CGGGACTCGCTGCGTTCCTAA |
| Transcript | >Ani_SJS72_1|g5839.t1 ATGGCTGAAGGCAAGAAGACCGACGACTACACGATCCAGATGGATTCGATAGACCAGGGCAACAAGAGCTTCGAG GCGCCGCCGCCGCCTCAGCCCAGGAGTCCGCCGTCGGGCTCGCTGTCCAACAACCCCATCTTGCCCGTCCTGGCC TATTGTGGATCCTCGATTTTGATGACCGTCATGAACAAATATGTCTTGTCCGGCACTGACTTCAACCTCAACTTT TTCCTCCTCTGCATCCAGTCTCTCGTTTGTATCATCGCTATCCAGACCTGTAAATCATGTGGTTTGATCACTTAT CGCGACTTCAGCGCGGACGAGGCCAGAAAGTGGTTCCCCATCACTCTGCTCTTGATCGGCATGATCTACACGGGC TCTAAGGCGCTTCAGTTCCTCTCGATTCCCGTCTACACCATCTTCAAGAACTTGACCATCATCCTTATCGCTTAC GGAGAGGTGCTGTGGTTTGGTGGCTCCGTCACCGGTCTTACCCTGTTCTCTTTCGGATTGATGGTCCTGAGCTCT ATCATTGCCGCCTGGGCTGACATCAAGCACGCTGTCGAGAGCAATGGCGATGCGACCGCCAAGGTGTCTACTTTG AATGCAGGCTATATCTGGATGCTGGTCAACTGCCTCTGCACGTCGTCCTATGTTTTGGGCATGCGCAAGCGGATC AAGCTGACCAACTTCAAGGACTTTGACACCATGTTCTACAACAACCTTCTGTCGATTCCCGTCCTGATCGTTCTG TCCGCTTTCTTGGAAGACTGGTCATCCACCAACGTCAACCGCAACTTCCCTCCCATGGACCGCAACAGCATCGTT TTCGCCATGATCCTCTCCGGCTTGTCGTCTGTGTTTATTTCCTATACCTCCGCCTGGTGCGTTCGCGTCACTTCT TCGACCACTTACTCCATGGTTGGAGCTCTGAACAAGCTTCCCATTGCTATCTCTGGACTTATTTTCTTCGATGCC CCTGTTACCTTCCCCAGCGTTTCGGCTATCGTCGTTGGCTTTGTTAGCGGTATCGTCTACGCCGTTGCTAAGATC AAGCAAAACGCTAAGCCAAGGACTGGTGTCTTGCCGACCGCCAACCCCCCGGTCAGCGCCAGCAGCCAGAGTATG CGGGACTCGCTGCGTTCCTAA |
| Gene | >Ani_SJS72_1|g5839.t1 ATGGCTGAAGGCAAGAAGACCGACGACTACACGATCCAGATGGATTCGATAGACCAGGGCAACAAGAGCTTCGAG GCGCCGCCGCCGCCTCAGCCCAGGAGTCCGCCGTCGGGCTCGCTGTCCAACAACCCCATCTTGCCCGTCCTGGCC TATTGTGGATCCTCGATTTTGATGACCGTCATGAACAAATATGTCTTGTCCGGCACTGACTTCAACCTCAACTTT TTCCTCCTCTGCATCCAGGTATGTTGGCTAAAATCGGAGCACATGATGGGCGTGTGTTGGATGTTCAAAGGCTGA CCGCTGTTCGATTTTGCCTGCAGTCTCTCGTTTGTATCATCGCTATCCAGACCTGTAAATCATGTGGTTTGATCA CTTATCGCGACTTCAGCGCGGACGAGGCCAGAAAGTGTAAGTGCTCTGCCTGCTCGTTAGATCCCCTCGCGCCCT CGAACTGACGTGCCTTTGATTATCACTAGGGTTCCCCATCACTCTGCTCTTGATCGGCATGATCTACACGGGCTC TAAGGCGCTTCAGTTCCTCTCGATTCCCGTCTACACCATCTTCAAGAACTTGACCATCATCCTTATCGCTTACGG AGAGGTGCTGTGGTTTGGTGGCTCCGTCACCGGTCTTACCCTGTTCTCTTTCGGATTGATGGTCCTGAGCTCTAT CATTGCCGCCTGGGCTGACATCAAGCACGCTGTCGAGAGCAATGGCGATGCGACCGCCAAGGTGTCTACTTTGAA TGCAGGCTATATCTGGATGCTGGTCAACTGCCTCTGCACGTCGTCCTATGTTTTGGGCATGCGCAAGCGGATCAA GCTGACCAACTTCAAGGACTTTGACAGTACGTTACTCAGACTAAAAACATTGTGGCTCAAAAGCATCCTTTACTG ACCTGCTGTTCTCTAGCCATGTTCTACAACAACCTTCTGTCGATTCCCGTCCTGATCGTTCTGTCCGCTTTCTTG GAAGACTGGTCATCCACCAACGTCAACCGCAACTTCCCTCCCATGGACCGCAACAGCATCGTTTTCGCCATGATC CTCTCCGGCTTGTCGTCTGTGTTTATTTCCTATACCTCCGCCTGGTGCGTTCGCGTCACTTCTTCGACCACTTAC TCCATGGTTGGAGCTCTGAACAAGCTTCCCATTGCTATCTCTGGACTTATTTTCTTCGATGCCCCTGTTACCTTC CCCAGCGTTTCGGCTATCGTCGTTGGCTTTGTTAGCGGTATCGTCTACGCCGTTGCTAAGATCAAGCAAAACGCT AAGCCAAGGACTGGTGTCTTGCCGACCGCCAACCCCCCGGTCAGCGCCAGCAGCCAGAGTATGCGGGACTCGCTG CGTTCCTAA |