© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g580.t1 |
| Gene name | |
| Location | scaffold_003:10438..11764 |
| Strand | - |
| Gene length (bp) | 1326 |
| Transcript length (bp) | 996 |
| Coding sequence length (bp) | 996 |
| Protein length (aa) | 332 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01095 | Pectinesterase | Pectinesterase | 1.4E-51 | 28 | 297 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0042545 | cell wall modification | Yes |
| GO:0030599 | pectinesterase activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0071555 | cell wall organization | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0003824 | catalytic activity | No |
| GO:0052689 | carboxylic ester hydrolase activity | No |
| GO:0045229 | external encapsulating structure organization | No |
| GO:0071554 | cell wall organization or biogenesis | No |
| GO:0003674 | molecular_function | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0016043 | cellular component organization | No |
| GO:0016787 | hydrolase activity | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g580.t1 MVKSILASVFFAATALAASRMTAPSGAIVVAKSGGDYDTISAAVDALSTTSTETQTIFIEEGSYDEQVYIPALSG KLIVYGQTEDTTTYTSNLVNITHAIALADVDNDDETATLRNYAEGSAIYNLNIANTCGQACHQALAVSAYATEQG YYACQFTGYQDTLLAETGYQVYAGTYIEGAVDFIFGQHARAWFHECDIRVLEGPSSASITANGRSSESDDSYYVI HKSTVAAADGNDVSSGTYYLGRPWSQYARVCFQKTSMTDVINHLGWTEWSTSTPNTENVTFVEYGNTGAGSKGPR ANFSSELTEPISISTLLGSDWEDWVDTSYIN* |
| Coding | >Ani_SJS72_1|g580.t1 ATGGTTAAGTCAATTCTTGCATCCGTTTTCTTTGCGGCGACTGCGCTGGCCGCGAGCCGCATGACGGCTCCTTCC GGTGCGATTGTCGTTGCCAAGTCCGGAGGTGACTACGACACGATCAGTGCTGCCGTTGATGCTCTGAGCACCACT TCGACCGAGACCCAGACTATCTTCATTGAGGAGGGATCCTACGACGAGCAGGTGTACATTCCCGCTCTCAGTGGA AAGCTGATCGTCTACGGTCAGACTGAGGACACCACCACCTACACCAGCAACCTGGTCAACATCACCCACGCCATT GCCTTAGCCGATGTCGACAATGACGATGAGACTGCAACCCTCCGTAACTACGCCGAGGGCTCGGCCATCTACAAC CTAAACATTGCCAACACCTGCGGTCAGGCCTGCCACCAGGCTCTCGCCGTGAGTGCCTATGCCACCGAGCAGGGA TACTACGCCTGCCAGTTCACCGGATACCAGGACACCCTTCTGGCTGAGACCGGTTACCAGGTTTACGCCGGAACC TACATCGAGGGTGCCGTTGACTTTATTTTCGGACAGCACGCCCGCGCTTGGTTCCACGAGTGCGACATCCGCGTT CTCGAGGGCCCCAGCTCCGCCTCCATCACCGCCAACGGCCGCTCCTCCGAGTCCGACGACTCCTACTACGTGATC CACAAGTCCACCGTCGCTGCTGCTGATGGCAACGATGTTTCCTCGGGCACCTACTATCTTGGCCGCCCCTGGTCC CAGTACGCTCGCGTCTGCTTCCAGAAGACCTCCATGACCGATGTGATCAACCACCTCGGCTGGACTGAGTGGTCG ACCTCCACCCCCAACACTGAGAATGTCACCTTTGTTGAATACGGCAACACCGGTGCTGGTTCTAAGGGCCCCCGT GCTAACTTCTCTTCTGAGCTCACCGAGCCCATCTCTATCTCTACCCTTCTGGGCTCTGACTGGGAGGACTGGGTT GATACCAGCTACATCAACTAA |
| Transcript | >Ani_SJS72_1|g580.t1 ATGGTTAAGTCAATTCTTGCATCCGTTTTCTTTGCGGCGACTGCGCTGGCCGCGAGCCGCATGACGGCTCCTTCC GGTGCGATTGTCGTTGCCAAGTCCGGAGGTGACTACGACACGATCAGTGCTGCCGTTGATGCTCTGAGCACCACT TCGACCGAGACCCAGACTATCTTCATTGAGGAGGGATCCTACGACGAGCAGGTGTACATTCCCGCTCTCAGTGGA AAGCTGATCGTCTACGGTCAGACTGAGGACACCACCACCTACACCAGCAACCTGGTCAACATCACCCACGCCATT GCCTTAGCCGATGTCGACAATGACGATGAGACTGCAACCCTCCGTAACTACGCCGAGGGCTCGGCCATCTACAAC CTAAACATTGCCAACACCTGCGGTCAGGCCTGCCACCAGGCTCTCGCCGTGAGTGCCTATGCCACCGAGCAGGGA TACTACGCCTGCCAGTTCACCGGATACCAGGACACCCTTCTGGCTGAGACCGGTTACCAGGTTTACGCCGGAACC TACATCGAGGGTGCCGTTGACTTTATTTTCGGACAGCACGCCCGCGCTTGGTTCCACGAGTGCGACATCCGCGTT CTCGAGGGCCCCAGCTCCGCCTCCATCACCGCCAACGGCCGCTCCTCCGAGTCCGACGACTCCTACTACGTGATC CACAAGTCCACCGTCGCTGCTGCTGATGGCAACGATGTTTCCTCGGGCACCTACTATCTTGGCCGCCCCTGGTCC CAGTACGCTCGCGTCTGCTTCCAGAAGACCTCCATGACCGATGTGATCAACCACCTCGGCTGGACTGAGTGGTCG ACCTCCACCCCCAACACTGAGAATGTCACCTTTGTTGAATACGGCAACACCGGTGCTGGTTCTAAGGGCCCCCGT GCTAACTTCTCTTCTGAGCTCACCGAGCCCATCTCTATCTCTACCCTTCTGGGCTCTGACTGGGAGGACTGGGTT GATACCAGCTACATCAACTAA |
| Gene | >Ani_SJS72_1|g580.t1 ATGGTTAAGTCAATTCTTGCATCCGTTTTCTTTGCGGCGACTGCGCTGGCCGCGAGCCGCATGACGGCTCCTTCC GGTGCGATTGTCGTTGCCAAGTCCGGAGGTGACTACGACACGGTGAGCATCTAGACTGTCGATCGTGTTGCAGAT GTGTGGCTGATAGTGTCTTGTTGAACAGATCAGTGCTGCCGTTGATGCTCTGAGCACCACTTCGACCGAGACCCA GACTATCTTCATTGAGGAGGGATCCTACGACGAGCAGGTGTACATTCCCGCTCTCAGTGGAAAGCTGATCGTCTA CGGTCAGACTGAGGAGTACGTTGTCAGTTGCGTATAGAAATTCAAGGATACTAATGAAGGTTTAGCACCACCACC TACACCAGCAACCTGGTCAACATCACCCACGCCATTGCCTTAGCCGATGTCGACAATGACGATGAGACTGGTCGG TCCACACACTCTGGAAAATGTCCGTGAACTCGCTAACAATAAGTAGCAACCCTCCGTAACTACGCCGAGGGCTCG GCCATCTACAACCTAAACATTGCCAACACCTGCGGTCAGGCCTGCCACCAGGCTCTCGCCGTGAGTGCCTATGCC ACCGAGCAGGGATACTACGCCTGCCAGTTCACCGGATACCAGGGTAGGACCAATTTCAGATATGCCAACCGACAG TGATTAATCTCTACTATAGACACCCTTCTGGCTGAGACCGGTTACCAGGTTTACGCCGGAACCTACATCGAGGGT GCCGTGTATGTCCCTACCTTAATACCTTCGAAAGAAGTGAATCCAACTAACGTACAACCAGTGACTTTATTTTCG GACAGCACGCCCGCGCTTGGTTCCACGAGTGCGACATCCGCGTTCTCGAGGGCCCCAGCTCCGCCTCCATCACCG CCAACGGCCGCTCCTCCGAGTCCGACGACTCCTACTACGTGATCCACAAGTCCACCGTCGCTGCTGCTGATGGCA ACGATGTTTCCTCGGGCACCTACTATCTTGGTATGCCACTGGTCTAGAACTGTCCACGGAGCCACTAGCCCACTA ACGAATATTATCACAGGCCGCCCCTGGTCCCAGTACGCTCGCGTCTGCTTCCAGAAGACCTCCATGACCGATGTG ATCAACCACCTCGGCTGGACTGAGTGGTCGACCTCCACCCCCAACACTGAGAATGTCACCTTTGTTGAATACGGC AACACCGGTGCTGGTTCTAAGGGCCCCCGTGCTAACTTCTCTTCTGAGCTCACCGAGCCCATCTCTATCTCTACC CTTCTGGGCTCTGACTGGGAGGACTGGGTTGATACCAGCTACATCAACTAA |