© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g5653.t1 |
| Gene name | |
| Location | scaffold_039:226623..228039 |
| Strand | - |
| Gene length (bp) | 1416 |
| Transcript length (bp) | 1188 |
| Coding sequence length (bp) | 1188 |
| Protein length (aa) | 396 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03595 | SLAC1 | Voltage-dependent anion channel | 6.1E-100 | 25 | 364 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 37 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 43 | 22 |
| 2 | 53 | 75 | 22 |
| 3 | 95 | 117 | 22 |
| 4 | 132 | 154 | 22 |
| 5 | 167 | 189 | 22 |
| 6 | 199 | 221 | 22 |
| 7 | 234 | 256 | 22 |
| 8 | 276 | 298 | 22 |
| 9 | 311 | 330 | 19 |
| 10 | 340 | 362 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g5653.t1 MSGQDPNSQSEVTKHDTGWRRVVRHFTPSWFSVTMGTGIVSILLNTLPYNGQWLYWISVVCFAFNVLLFAIGCII TFLRYTLYPEIFFAMIKHPVQSMFIGTFPMGFATIINMFCFVCVPAWGDWTRNFAWGLWIFDAIFSVITALSLPF LLMAHGSEMQLSSMTAVWLLPIVSCIVAASSGAIVADVLPDPQHALWTVLVSYVLWGIGFPLALMVMVIYLQRLT LHKLPPKAVIVSVFLPLGPLGQGGFGIMKLGQAAQEIFPKTQTLEAASGPIFYTMGFMIALILWSFGLVWLFFAL ASIARSKSFPFNIGWWGFTFPLGVYATSTCQMGKELPSEFFRVLGTILSLCVVVLWIVVSIGTLRGVVSGRLFFA PCLGDLKAREDENKDGTKAA* |
| Coding | >Ani_SJS72_1|g5653.t1 ATGAGCGGACAAGATCCCAATAGCCAGTCCGAAGTCACCAAGCATGATACGGGTTGGCGGAGAGTAGTTCGCCAT TTCACTCCATCTTGGTTTTCGGTTACCATGGGCACAGGCATTGTGTCTATTCTACTCAATACCCTTCCCTACAAT GGCCAGTGGCTATACTGGATCTCTGTTGTCTGTTTTGCTTTTAATGTCCTCCTCTTTGCCATAGGGTGTATCATC ACCTTCCTTCGCTATACCCTATATCCGGAAATCTTCTTCGCCATGATCAAGCATCCAGTCCAGTCCATGTTCATA GGAACATTTCCGATGGGATTCGCGACTATCATCAACATGTTCTGTTTCGTCTGTGTTCCAGCCTGGGGTGACTGG ACGCGCAATTTTGCCTGGGGCTTGTGGATATTTGATGCAATCTTTTCAGTCATCACTGCCCTCTCTCTACCCTTC TTACTAATGGCCCATGGAAGCGAAATGCAACTCTCATCCATGACAGCTGTCTGGCTTCTTCCCATCGTCAGCTGC ATTGTCGCAGCTTCGTCAGGGGCCATCGTAGCGGATGTTCTCCCCGATCCGCAACACGCTCTCTGGACCGTGCTC GTGAGCTACGTTCTCTGGGGCATCGGATTTCCTCTTGCACTAATGGTAATGGTGATCTACCTACAACGACTGACC CTGCACAAATTGCCTCCTAAAGCGGTGATTGTGAGCGTGTTCCTCCCCCTGGGACCACTTGGTCAGGGCGGCTTC GGTATAATGAAACTGGGCCAAGCAGCGCAGGAAATCTTCCCTAAAACACAGACCCTCGAGGCTGCATCTGGTCCG ATCTTCTATACCATGGGGTTCATGATCGCTCTGATTCTCTGGTCCTTTGGACTCGTCTGGCTATTTTTTGCCTTA GCATCCATTGCGAGGAGTAAGAGCTTCCCATTTAATATTGGATGGTGGGGATTCACGTTCCCTTTGGGGGTGTAC GCCACAAGCACGTGCCAGATGGGCAAGGAGCTGCCGTCGGAGTTTTTCCGGGTTTTGGGAACGATCCTCTCGCTT TGTGTGGTGGTTTTATGGATTGTGGTGAGTATTGGGACATTGCGGGGAGTCGTGTCAGGCCGGTTGTTCTTTGCG CCATGTTTGGGGGACTTGAAGGCACGGGAGGACGAGAATAAAGATGGAACGAAGGCAGCCTGA |
| Transcript | >Ani_SJS72_1|g5653.t1 ATGAGCGGACAAGATCCCAATAGCCAGTCCGAAGTCACCAAGCATGATACGGGTTGGCGGAGAGTAGTTCGCCAT TTCACTCCATCTTGGTTTTCGGTTACCATGGGCACAGGCATTGTGTCTATTCTACTCAATACCCTTCCCTACAAT GGCCAGTGGCTATACTGGATCTCTGTTGTCTGTTTTGCTTTTAATGTCCTCCTCTTTGCCATAGGGTGTATCATC ACCTTCCTTCGCTATACCCTATATCCGGAAATCTTCTTCGCCATGATCAAGCATCCAGTCCAGTCCATGTTCATA GGAACATTTCCGATGGGATTCGCGACTATCATCAACATGTTCTGTTTCGTCTGTGTTCCAGCCTGGGGTGACTGG ACGCGCAATTTTGCCTGGGGCTTGTGGATATTTGATGCAATCTTTTCAGTCATCACTGCCCTCTCTCTACCCTTC TTACTAATGGCCCATGGAAGCGAAATGCAACTCTCATCCATGACAGCTGTCTGGCTTCTTCCCATCGTCAGCTGC ATTGTCGCAGCTTCGTCAGGGGCCATCGTAGCGGATGTTCTCCCCGATCCGCAACACGCTCTCTGGACCGTGCTC GTGAGCTACGTTCTCTGGGGCATCGGATTTCCTCTTGCACTAATGGTAATGGTGATCTACCTACAACGACTGACC CTGCACAAATTGCCTCCTAAAGCGGTGATTGTGAGCGTGTTCCTCCCCCTGGGACCACTTGGTCAGGGCGGCTTC GGTATAATGAAACTGGGCCAAGCAGCGCAGGAAATCTTCCCTAAAACACAGACCCTCGAGGCTGCATCTGGTCCG ATCTTCTATACCATGGGGTTCATGATCGCTCTGATTCTCTGGTCCTTTGGACTCGTCTGGCTATTTTTTGCCTTA GCATCCATTGCGAGGAGTAAGAGCTTCCCATTTAATATTGGATGGTGGGGATTCACGTTCCCTTTGGGGGTGTAC GCCACAAGCACGTGCCAGATGGGCAAGGAGCTGCCGTCGGAGTTTTTCCGGGTTTTGGGAACGATCCTCTCGCTT TGTGTGGTGGTTTTATGGATTGTGGTGAGTATTGGGACATTGCGGGGAGTCGTGTCAGGCCGGTTGTTCTTTGCG CCATGTTTGGGGGACTTGAAGGCACGGGAGGACGAGAATAAAGATGGAACGAAGGCAGCCTGA |
| Gene | >Ani_SJS72_1|g5653.t1 ATGAGCGGACAAGATCCCAATAGCCAGTCCGAAGTCACCAAGCATGATACGGGTTGGCGGAGAGTAGTTCGCCAT TTCACTCCATCGTACGCAGCACTCGAACATGTCGCAAGTGGAAATGACTAACATGTCTGCACAGTTGGTTTTCGG TTACCATGGGCACAGGCATTGTGTCTATTCTACTCAATACCCTTCCCTACAATGGCCAGTGGCTATACTGGATCT CTGTTGTCTGTTTTGCTTTTAATGTCCTCCTCTTTGCCATAGGGTGTATCATCACCTTCCTTCGCTATACCCTAT ATCCGGAAATCTTCTTCGCCATGATCAAGCATCCAGTCCAGTCCATGTTCATAGGAACATTTCCGATGGGATTCG CGACTATCATCAACATGTTCTGTTTCGTCTGTGTTCCAGCCTGGGGTGACTGGACGCGCAATTTTGCCTGGGGCT TGTGGATATTTGATGCAATCTTTTCAGTCATCACTGCCCTCTCTCTACCCTTCTTACTGTGCGTCTGGCCCTGCA CAGAGACTATGAAGCAATCATAAGCTCGACTAACATGACTGCAGAATGGCCCATGGAAGCGAAATGCAACTCTCA TCCATGACAGCTGTCTGGCTTCTTCCCATCGTCAGCTGCATTGTCGCAGCTTCGTCAGGGGCCATCGTAGCGGAT GTTCTCCCCGATCCGCAACACGCTCTCTGGACCGTGCTCGTGAGCTACGTTCTCTGGGGCATCGGATTTCCTCTT GCACTAATGGTAATGGTGATCTACCTACAACGACTGACCCTGCACAAATTGCCTCCTAAAGCGGTGATTGTGAGC GTGTTCCTCCCCCTGGGACCACTTGGTCAGGGCGGCTTCGGGTGAGTCTATGCCTTCCTTCGCTATGTGATCATC GCATATTAAGTAGTATACTACTAGTATAATGAAACTGGGCCAAGCAGCGCAGGAAATCTTCCCTAAAACACAGAC CCTCGAGGCTGCATCTGGTCCGATCTTCTATACCATGGGGTTCATGATCGCTCTGATTCTCTGGTCCTTTGGACT CGTCTGGCTATTTTTTGCCTTAGCATCCATTGCGAGGAGTAAGAGCTTCCCATTTAATATTGGATGGTGGGGATT CACGTTCCCTTTGGGGGTGTACGCCACAAGCACGTGCCAGATGGGCAAGGAGCTGCCGTCGGAGTTTTTCCGGGT TTTGGGAACGGTAGGTTTGACTTCTTTAAGCTTTTTGTGATGTTTCCTGATGTTGATGTACGACAGATCCTCTCG CTTTGTGTGGTGGTTTTATGGATTGTGGTGAGTATTGGGACATTGCGGGGAGTCGTGTCAGGCCGGTTGTTCTTT GCGCCATGTTTGGGGGACTTGAAGGCACGGGAGGACGAGAATAAAGATGGAACGAAGGCAGCCTGA |