© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g5602.t1 |
| Gene name | |
| Location | scaffold_039:55165..56101 |
| Strand | + |
| Gene length (bp) | 936 |
| Transcript length (bp) | 645 |
| Coding sequence length (bp) | 645 |
| Protein length (aa) | 215 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05821 | NDUF_B8 | NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8) | 3.5E-07 | 97 | 191 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005739 | mitochondrion | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0043226 | organelle | No |
| GO:0043229 | intracellular organelle | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0043227 | membrane-bounded organelle | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 50 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 158 | 180 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g5602.t1 MNLRTQYRTGRRSSHSSQSQPPKSRHRVVCTSSHGRLSLPVTSLDFTSPQFPPNSLQQETMLSQRILTRRLPQVA ARYTVPRASFSQVRSLKAAEVDDPLQNNNYQNPPRVKRAFRDPYGDWWDKQERRNFGEPVHEENEILGVFSPEQY THVTARKGLFQVGAFVVTFLGLCGVVSMFYPDKPSVPKTYPDGLEKELGGPGAAPARKSNEASW* |
| Coding | >Ani_SJS72_1|g5602.t1 ATGAACCTCAGGACCCAATACCGAACTGGACGCAGAAGCAGCCACTCCAGCCAATCACAACCTCCCAAATCCCGT CATCGAGTCGTTTGCACTTCATCCCATGGCCGTCTGAGCCTTCCGGTCACATCCCTTGACTTCACCTCCCCTCAA TTCCCCCCCAATTCTCTACAGCAAGAAACAATGCTGTCCCAACGAATCTTGACCCGCCGCCTGCCTCAGGTGGCC GCCCGCTACACCGTGCCTCGCGCCTCATTCTCACAGGTCCGGAGTCTCAAAGCTGCGGAGGTGGACGATCCTTTG CAGAACAACAACTACCAGAACCCTCCCCGTGTTAAGCGCGCCTTCAGAGACCCCTACGGCGATTGGTGGGACAAG CAGGAGAGACGGAACTTTGGCGAGCCCGTTCACGAGGAGAACGAAATTCTCGGTGTCTTCAGTCCCGAACAATAT ACCCACGTCACGGCTCGCAAAGGTCTCTTCCAGGTCGGAGCCTTCGTCGTAACCTTCCTGGGATTGTGCGGTGTC GTCAGCATGTTCTACCCCGACAAGCCCAGCGTTCCGAAGACCTATCCCGATGGCTTGGAGAAAGAGCTCGGTGGA CCGGGTGCTGCTCCGGCTCGCAAGTCCAACGAGGCTAGCTGGTGA |
| Transcript | >Ani_SJS72_1|g5602.t1 ATGAACCTCAGGACCCAATACCGAACTGGACGCAGAAGCAGCCACTCCAGCCAATCACAACCTCCCAAATCCCGT CATCGAGTCGTTTGCACTTCATCCCATGGCCGTCTGAGCCTTCCGGTCACATCCCTTGACTTCACCTCCCCTCAA TTCCCCCCCAATTCTCTACAGCAAGAAACAATGCTGTCCCAACGAATCTTGACCCGCCGCCTGCCTCAGGTGGCC GCCCGCTACACCGTGCCTCGCGCCTCATTCTCACAGGTCCGGAGTCTCAAAGCTGCGGAGGTGGACGATCCTTTG CAGAACAACAACTACCAGAACCCTCCCCGTGTTAAGCGCGCCTTCAGAGACCCCTACGGCGATTGGTGGGACAAG CAGGAGAGACGGAACTTTGGCGAGCCCGTTCACGAGGAGAACGAAATTCTCGGTGTCTTCAGTCCCGAACAATAT ACCCACGTCACGGCTCGCAAAGGTCTCTTCCAGGTCGGAGCCTTCGTCGTAACCTTCCTGGGATTGTGCGGTGTC GTCAGCATGTTCTACCCCGACAAGCCCAGCGTTCCGAAGACCTATCCCGATGGCTTGGAGAAAGAGCTCGGTGGA CCGGGTGCTGCTCCGGCTCGCAAGTCCAACGAGGCTAGCTGGTGA |
| Gene | >Ani_SJS72_1|g5602.t1 ATGAACCTCAGGACCCAATACCGAACTGGACGTATTTCATTGGGTATTATTGAGTATTTTTGGTACTGAAGCTTT ACCGTACCGTTCATTGCTACCTTGTCGCCTCAGGCAGAAGCAGCCACTCCAGCCAATCACAACCTCCCAAATCCC GTCATCGAGTCGTTTGCACTTCATCCCATGGCCGTCTGAGCCTTCCGGTCACATCCCTTGACTTCACCTCCCCTC AATTCCCCCCCAATTCTCTACAGCAAGAAACAGTTAGTACTTCCGAGCTCTTTCTATCCCTCCCTCTTTGGCTCT TCGCTGCATTGACCCTATTGCTAACCGCGATTGCCAGATGCTGTCCCAACGAATCTTGACCCGCCGCCTGCCTCA GGTGGCCGCCCGCTACACCGTGCCTCGCGCCTCATTCTCACAGGTCCGGAGTCTCAAAGCTGCGGAGGTGGACGA TCCTTTGCAGGTAGGATGTGTACTAGGAACTCCAATTGCTTACTGCCTCGGTTGATTGACACCGCTCGGTTTCGG CCTACAGAACAACAACTACCAGAACCCTCCCCGTGTTAAGCGCGCCTTCAGAGACCCCTACGGCGATTGGTGGGA CAAGCAGGAGAGACGGAACTTTGGCGAGCCCGTTCACGAGGAGAACGAAATTCTCGGTGTCTTCAGTCCCGAACA ATATACCCACGTCACGGCTCGCAAAGGTCTCTTCCAGGTCGGAGCCTTCGTCGTAACCTTCCTGGGATTGTGCGG TGTCGTCAGCATGTTCTACCCCGACAAGCCCAGCGTTCCGAAGACCTATCCCGATGGCTTGGAGAAAGAGCTCGG TGGACCGGGTGCTGCTCCGGTGCGTCAATGACCCGTCCTATGGACCTTTGGCTAGGCTGTGTGCTAACGAACGAG ATGTAGGCTCGCAAGTCCAACGAGGCTAGCTGGTGA |