© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS72_1|g5238.t1 |
| Gene name | |
| Location | scaffold_035:149863..151661 |
| Strand | - |
| Gene length (bp) | 1798 |
| Transcript length (bp) | 1695 |
| Coding sequence length (bp) | 1695 |
| Protein length (aa) | 565 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 1.5E-74 | 60 | 507 |
| PF00324 | AA_permease | Amino acid permease | 4.7E-19 | 83 | 480 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 62 | 84 | 22 |
| 2 | 89 | 111 | 22 |
| 3 | 124 | 146 | 22 |
| 4 | 187 | 209 | 22 |
| 5 | 216 | 235 | 19 |
| 6 | 255 | 277 | 22 |
| 7 | 298 | 320 | 22 |
| 8 | 348 | 370 | 22 |
| 9 | 402 | 424 | 22 |
| 10 | 428 | 450 | 22 |
| 11 | 463 | 485 | 22 |
| 12 | 500 | 518 | 18 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g5238.t1 MSGTGNHKAVSKGAVFADVDHDPVTTVLPQGDIPYTDHAMDADERVIVALGYKQEFKREFSLWTTFCVSFSVLGL LPSFASTIYYGMGYAGTAGMVWGWIIAMVFIQCVAMSMAELCSAMPTSGGLYYAAAVLAPPKYGPFAAWITGWSN WIGQITAAPSVDYALSAMILAAASMQNPDYVPTNWQVYLLTVLVLIIHTAISSMPTIWVARVNSWGSTFNIIALI ITLIAIPAGTTNEPKFSSSRDVWGTITNLTDFPDGVAVLMTFVGVIWTMSGYDSPFHLSEECSNANVASPRAIVM TSGAGGLLGWFLQLVVAYTVTDIDAVINSDLGQPWASYLLQVLPRKTALALLALTIISGFSMGQGCMVAASRVTY AYARDDCFPLSKYWKMVNTRTQTPVNAVILNGVLGILMCLLVLAGDTAIGALFSIGGIAQFVAFAIPIAIRVFFV GHRFRKGPWHLGPFGPWIGGMGVAFVLLMVPVLCLPSVTGSDLTPDLMNWTCLVWGAPMLGVTIWWVVDAHKWFT GPKVNVEHAIHAADATVIDGVGADEIVVQDDASSKASAR* |
| Coding | >Ani_SJS72_1|g5238.t1 ATGTCTGGCACGGGCAATCACAAGGCTGTCTCCAAAGGAGCAGTGTTCGCGGACGTCGATCATGACCCCGTCACG ACCGTACTGCCGCAAGGCGACATCCCTTATACCGATCATGCGATGGATGCGGACGAGAGGGTCATTGTGGCCCTG GGGTACAAGCAAGAATTTAAGCGTGAATTTTCGCTATGGACAACATTTTGCGTCAGCTTTTCGGTACTCGGGTTG CTTCCATCATTTGCAAGCACGATATACTACGGAATGGGCTATGCAGGAACGGCTGGTATGGTCTGGGGCTGGATC ATCGCGATGGTTTTCATTCAGTGCGTCGCCATGTCCATGGCTGAGCTATGTTCCGCGATGCCTACAAGTGGTGGT CTTTACTACGCCGCAGCAGTCCTTGCACCTCCAAAATATGGGCCTTTTGCCGCTTGGATCACAGGATGGTCGAAC TGGATCGGGCAGATCACCGCAGCGCCATCTGTGGATTACGCGCTTTCTGCAATGATCCTCGCCGCTGCATCAATG CAGAATCCAGATTATGTCCCCACTAACTGGCAGGTTTATCTCCTGACAGTGCTCGTTCTCATCATCCATACGGCC ATCAGCAGCATGCCCACCATATGGGTCGCCCGAGTCAACTCCTGGGGCTCAACGTTCAACATCATCGCCCTCATC ATTACCCTCATCGCTATTCCTGCTGGAACTACGAATGAGCCCAAGTTTTCCTCGTCTAGGGACGTTTGGGGCACC ATCACCAACCTCACCGACTTCCCCGATGGTGTGGCCGTTCTGATGACTTTCGTCGGCGTCATCTGGACCATGTCT GGCTACGATTCGCCATTTCATCTAAGCGAGGAATGCTCCAATGCCAATGTCGCCTCGCCGCGTGCGATCGTAATG ACCTCGGGGGCTGGCGGCTTGCTGGGATGGTTCCTGCAGTTAGTCGTCGCTTACACAGTCACCGACATCGACGCA GTCATAAACTCGGACTTGGGCCAGCCCTGGGCCTCGTACTTGCTCCAGGTCTTGCCACGCAAGACTGCTTTGGCC CTCCTAGCCCTCACCATTATCAGCGGTTTCTCCATGGGACAGGGCTGCATGGTGGCTGCCTCACGAGTAACCTAC GCCTACGCACGGGATGACTGCTTCCCACTATCCAAATACTGGAAGATGGTCAACACGCGCACCCAGACCCCTGTC AATGCGGTGATCCTCAACGGCGTCCTGGGAATCCTCATGTGTCTGCTGGTTCTAGCTGGCGATACAGCCATCGGA GCTTTATTCTCTATTGGCGGCATCGCTCAGTTTGTCGCTTTTGCCATTCCCATCGCGATTCGGGTGTTCTTTGTT GGTCACCGGTTCCGGAAAGGTCCGTGGCATCTGGGCCCATTTGGACCCTGGATTGGGGGAATGGGTGTGGCGTTC GTGCTTCTCATGGTGCCCGTGCTCTGTCTGCCCAGTGTCACCGGCTCTGATCTGACACCGGATCTGATGAACTGG ACGTGTCTGGTCTGGGGAGCGCCGATGCTGGGGGTAACTATCTGGTGGGTTGTGGATGCGCACAAGTGGTTCACG GGACCCAAGGTCAATGTGGAGCACGCAATCCACGCTGCGGATGCGACTGTTATAGATGGCGTGGGAGCAGATGAG ATTGTAGTGCAAGACGATGCGTCGAGCAAGGCATCTGCGAGGTAG |
| Transcript | >Ani_SJS72_1|g5238.t1 ATGTCTGGCACGGGCAATCACAAGGCTGTCTCCAAAGGAGCAGTGTTCGCGGACGTCGATCATGACCCCGTCACG ACCGTACTGCCGCAAGGCGACATCCCTTATACCGATCATGCGATGGATGCGGACGAGAGGGTCATTGTGGCCCTG GGGTACAAGCAAGAATTTAAGCGTGAATTTTCGCTATGGACAACATTTTGCGTCAGCTTTTCGGTACTCGGGTTG CTTCCATCATTTGCAAGCACGATATACTACGGAATGGGCTATGCAGGAACGGCTGGTATGGTCTGGGGCTGGATC ATCGCGATGGTTTTCATTCAGTGCGTCGCCATGTCCATGGCTGAGCTATGTTCCGCGATGCCTACAAGTGGTGGT CTTTACTACGCCGCAGCAGTCCTTGCACCTCCAAAATATGGGCCTTTTGCCGCTTGGATCACAGGATGGTCGAAC TGGATCGGGCAGATCACCGCAGCGCCATCTGTGGATTACGCGCTTTCTGCAATGATCCTCGCCGCTGCATCAATG CAGAATCCAGATTATGTCCCCACTAACTGGCAGGTTTATCTCCTGACAGTGCTCGTTCTCATCATCCATACGGCC ATCAGCAGCATGCCCACCATATGGGTCGCCCGAGTCAACTCCTGGGGCTCAACGTTCAACATCATCGCCCTCATC ATTACCCTCATCGCTATTCCTGCTGGAACTACGAATGAGCCCAAGTTTTCCTCGTCTAGGGACGTTTGGGGCACC ATCACCAACCTCACCGACTTCCCCGATGGTGTGGCCGTTCTGATGACTTTCGTCGGCGTCATCTGGACCATGTCT GGCTACGATTCGCCATTTCATCTAAGCGAGGAATGCTCCAATGCCAATGTCGCCTCGCCGCGTGCGATCGTAATG ACCTCGGGGGCTGGCGGCTTGCTGGGATGGTTCCTGCAGTTAGTCGTCGCTTACACAGTCACCGACATCGACGCA GTCATAAACTCGGACTTGGGCCAGCCCTGGGCCTCGTACTTGCTCCAGGTCTTGCCACGCAAGACTGCTTTGGCC CTCCTAGCCCTCACCATTATCAGCGGTTTCTCCATGGGACAGGGCTGCATGGTGGCTGCCTCACGAGTAACCTAC GCCTACGCACGGGATGACTGCTTCCCACTATCCAAATACTGGAAGATGGTCAACACGCGCACCCAGACCCCTGTC AATGCGGTGATCCTCAACGGCGTCCTGGGAATCCTCATGTGTCTGCTGGTTCTAGCTGGCGATACAGCCATCGGA GCTTTATTCTCTATTGGCGGCATCGCTCAGTTTGTCGCTTTTGCCATTCCCATCGCGATTCGGGTGTTCTTTGTT GGTCACCGGTTCCGGAAAGGTCCGTGGCATCTGGGCCCATTTGGACCCTGGATTGGGGGAATGGGTGTGGCGTTC GTGCTTCTCATGGTGCCCGTGCTCTGTCTGCCCAGTGTCACCGGCTCTGATCTGACACCGGATCTGATGAACTGG ACGTGTCTGGTCTGGGGAGCGCCGATGCTGGGGGTAACTATCTGGTGGGTTGTGGATGCGCACAAGTGGTTCACG GGACCCAAGGTCAATGTGGAGCACGCAATCCACGCTGCGGATGCGACTGTTATAGATGGCGTGGGAGCAGATGAG ATTGTAGTGCAAGACGATGCGTCGAGCAAGGCATCTGCGAGGTAG |
| Gene | >Ani_SJS72_1|g5238.t1 ATGTCTGGCACGGGCAATCACAAGGCTGTCTCCAAAGGAGCAGTGTTCGCGGACGTCGATCATGACCCCGTCACG ACCGTACTGCCGCAAGGCGACATCCCTTATACCGATCATGCGATGGATGCGGACGAGAGGGTCATTGTGGCCCTG GGGTACAAGCAAGAATTTAAGCGTGAATTTTCGCTATGGACAACATTTTGCGTCAGCTTTTCGGTACTCGGGTTG CTTCCATCATTTGCAAGCACGATATACTACGGTAGCTGTTCCTGGACCCTTTGATACAACGGGTAGGGCTGACGT CCACAAAGGAATGGGCTATGCAGGAACGGCTGGTATGGTCTGGGGCTGGATCATCGCGATGGTTTTCATTCAGTG CGTCGCCATGTCCATGGCTGAGCTATGTTCCGCGATGCCTACAAGGTAAACCTTGCCTCATCGCCTGATATAGGA GAATATGACTGACTTTGGCAGTGGTGGTCTTTACTACGCCGCAGCAGTCCTTGCACCTCCAAAATATGGGCCTTT TGCCGCTTGGATCACAGGATGGTCGAACTGGATCGGGCAGATCACCGCAGCGCCATCTGTGGATTACGCGCTTTC TGCAATGATCCTCGCCGCTGCATCAATGCAGAATCCAGATTATGTCCCCACTAACTGGCAGGTTTATCTCCTGAC AGTGCTCGTTCTCATCATCCATACGGCCATCAGCAGCATGCCCACCATATGGGTCGCCCGAGTCAACTCCTGGGG CTCAACGTTCAACATCATCGCCCTCATCATTACCCTCATCGCTATTCCTGCTGGAACTACGAATGAGCCCAAGTT TTCCTCGTCTAGGGACGTTTGGGGCACCATCACCAACCTCACCGACTTCCCCGATGGTGTGGCCGTTCTGATGAC TTTCGTCGGCGTCATCTGGACCATGTCTGGCTACGATTCGCCATTTCATCTAAGCGAGGAATGCTCCAATGCCAA TGTCGCCTCGCCGCGTGCGATCGTAATGACCTCGGGGGCTGGCGGCTTGCTGGGATGGTTCCTGCAGTTAGTCGT CGCTTACACAGTCACCGACATCGACGCAGTCATAAACTCGGACTTGGGCCAGCCCTGGGCCTCGTACTTGCTCCA GGTCTTGCCACGCAAGACTGCTTTGGCCCTCCTAGCCCTCACCATTATCAGCGGTTTCTCCATGGGACAGGGCTG CATGGTGGCTGCCTCACGAGTAACCTACGCCTACGCACGGGATGACTGCTTCCCACTATCCAAATACTGGAAGAT GGTCAACACGCGCACCCAGACCCCTGTCAATGCGGTGATCCTCAACGGCGTCCTGGGAATCCTCATGTGTCTGCT GGTTCTAGCTGGCGATACAGCCATCGGAGCTTTATTCTCTATTGGCGGCATCGCTCAGTTTGTCGCTTTTGCCAT TCCCATCGCGATTCGGGTGTTCTTTGTTGGTCACCGGTTCCGGAAAGGTCCGTGGCATCTGGGCCCATTTGGACC CTGGATTGGGGGAATGGGTGTGGCGTTCGTGCTTCTCATGGTGCCCGTGCTCTGTCTGCCCAGTGTCACCGGCTC TGATCTGACACCGGATCTGATGAACTGGACGTGTCTGGTCTGGGGAGCGCCGATGCTGGGGGTAACTATCTGGTG GGTTGTGGATGCGCACAAGTGGTTCACGGGACCCAAGGTCAATGTGGAGCACGCAATCCACGCTGCGGATGCGAC TGTTATAGATGGCGTGGGAGCAGATGAGATTGTAGTGCAAGACGATGCGTCGAGCAAGGCATCTGCGAGGTAG |