Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS72_1|g5202.t1
Gene name
Locationscaffold_035:25010..26045
Strand-
Gene length (bp)1035
Transcript length (bp)915
Coding sequence length (bp)915
Protein length (aa) 305

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04479 RTA1 RTA1 like protein 1.5E-72 69 281

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 70 0.5

Transmembrane Domains

Domain # Start End Length
1 31 53 22
2 65 87 22
3 102 124 22
4 136 158 22
5 173 195 22
6 215 234 19
7 254 273 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS72_1|g5202.t1
MSGLNTTAEYEFKKQLTYGCHAKIDGYGTSYGYVPSLAAGIVFCVLFGLSMLLHTLQLVWKRTWWCSVFVLGCIT
EVLGWAARTWSAECPYNGTAFLMQISTLIIAPTFFTAGIYVLLGRFIHLLGPETSILSPKLYLWIFVTCDIISLV
VQAVGGGMASMEVNKVNGDTAPGTHTMVAGIVFQLASITVFVFLAADFVRRTLRMRILQTMTGTIIPLLGAMIFS
VLCIYIRSIYRTIELSQGWSGYLITHERYFIVLDGIMMVLAVGVFNIFHPGWLLPKNEVKPFHREIYSPDGVASG
MEMR*
Coding >Ani_SJS72_1|g5202.t1
ATGTCGGGCCTTAATACTACTGCAGAATATGAATTCAAGAAACAATTGACCTATGGCTGCCATGCAAAGATCGAT
GGCTACGGCACCTCATATGGCTACGTCCCCTCGCTGGCTGCGGGCATTGTATTTTGTGTCCTCTTCGGTCTGTCG
ATGTTGCTCCATACATTGCAGCTGGTGTGGAAGAGGACCTGGTGGTGCTCTGTCTTCGTTCTTGGATGTATCACG
GAGGTCCTGGGCTGGGCAGCACGTACCTGGTCTGCTGAATGTCCATACAATGGAACCGCCTTTCTCATGCAAATC
TCTACCTTGATCATCGCCCCCACTTTCTTTACCGCCGGGATCTACGTGCTCCTGGGCCGTTTCATCCACCTGTTG
GGGCCCGAGACCTCAATTTTGAGTCCGAAACTCTATCTCTGGATTTTCGTCACCTGCGATATCATCTCATTGGTT
GTCCAGGCTGTGGGTGGTGGCATGGCGTCGATGGAAGTCAACAAGGTCAACGGCGATACTGCTCCAGGCACGCAC
ACCATGGTCGCCGGTATCGTGTTCCAGCTGGCGTCTATCACGGTCTTTGTTTTCCTCGCCGCTGATTTCGTCCGT
CGCACTCTCCGTATGCGGATCTTGCAAACCATGACCGGCACGATCATCCCTCTTCTCGGTGCGATGATCTTCTCT
GTCCTCTGCATCTACATCCGGAGTATCTATCGAACCATTGAGCTGTCGCAGGGGTGGTCTGGCTACTTGATCACG
CACGAACGGTACTTCATTGTCCTGGACGGCATTATGATGGTCTTAGCTGTGGGTGTGTTTAACATCTTCCATCCA
GGATGGCTGCTACCTAAGAATGAGGTCAAGCCATTCCACCGCGAGATCTACTCTCCTGACGGGGTAGCCAGTGGA
ATGGAGATGCGGTAA
Transcript >Ani_SJS72_1|g5202.t1
ATGTCGGGCCTTAATACTACTGCAGAATATGAATTCAAGAAACAATTGACCTATGGCTGCCATGCAAAGATCGAT
GGCTACGGCACCTCATATGGCTACGTCCCCTCGCTGGCTGCGGGCATTGTATTTTGTGTCCTCTTCGGTCTGTCG
ATGTTGCTCCATACATTGCAGCTGGTGTGGAAGAGGACCTGGTGGTGCTCTGTCTTCGTTCTTGGATGTATCACG
GAGGTCCTGGGCTGGGCAGCACGTACCTGGTCTGCTGAATGTCCATACAATGGAACCGCCTTTCTCATGCAAATC
TCTACCTTGATCATCGCCCCCACTTTCTTTACCGCCGGGATCTACGTGCTCCTGGGCCGTTTCATCCACCTGTTG
GGGCCCGAGACCTCAATTTTGAGTCCGAAACTCTATCTCTGGATTTTCGTCACCTGCGATATCATCTCATTGGTT
GTCCAGGCTGTGGGTGGTGGCATGGCGTCGATGGAAGTCAACAAGGTCAACGGCGATACTGCTCCAGGCACGCAC
ACCATGGTCGCCGGTATCGTGTTCCAGCTGGCGTCTATCACGGTCTTTGTTTTCCTCGCCGCTGATTTCGTCCGT
CGCACTCTCCGTATGCGGATCTTGCAAACCATGACCGGCACGATCATCCCTCTTCTCGGTGCGATGATCTTCTCT
GTCCTCTGCATCTACATCCGGAGTATCTATCGAACCATTGAGCTGTCGCAGGGGTGGTCTGGCTACTTGATCACG
CACGAACGGTACTTCATTGTCCTGGACGGCATTATGATGGTCTTAGCTGTGGGTGTGTTTAACATCTTCCATCCA
GGATGGCTGCTACCTAAGAATGAGGTCAAGCCATTCCACCGCGAGATCTACTCTCCTGACGGGGTAGCCAGTGGA
ATGGAGATGCGGTAA
Gene >Ani_SJS72_1|g5202.t1
ATGTCGGGCCTTAATACTACTGCAGAATATGAATTCAAGAAACAATTGACCTATGGCTGCCATGCAAAGATCGAT
GGCTACGGCACCTCATATGGCTACGTCCCCTCGCTGGCTGCGGGCATTGTATTTTGTGTCCTCTTCGGTCTGTCG
ATGTTGCTCCATACATTGCAGCTGGTGTGGAAGAGGACCTGGTGGTGCTCTGTCTTCGTTCTTGGATGTATCAGT
ATGTGAACCCCTCCTGCAAGAGTCCTTTCCAACCATACGCTAACACAACCATTACAGCGGAGGTCCTGGGCTGGG
CAGCACGTACCTGGTCTGCTGAATGTCCATACAATGGAACCGCCTTTCTCATGCAAATCTCTACCTTGATCATCG
GTACGCGAGCAGGACCACGCATATCAAATTCATGAAACAGATACTAATTTTCTCTCTTTAGCCCCCACTTTCTTT
ACCGCCGGGATCTACGTGCTCCTGGGCCGTTTCATCCACCTGTTGGGGCCCGAGACCTCAATTTTGAGTCCGAAA
CTCTATCTCTGGATTTTCGTCACCTGCGATATCATCTCATTGGTTGTCCAGGCTGTGGGTGGTGGCATGGCGTCG
ATGGAAGTCAACAAGGTCAACGGCGATACTGCTCCAGGCACGCACACCATGGTCGCCGGTATCGTGTTCCAGCTG
GCGTCTATCACGGTCTTTGTTTTCCTCGCCGCTGATTTCGTCCGTCGCACTCTCCGTATGCGGATCTTGCAAACC
ATGACCGGCACGATCATCCCTCTTCTCGGTGCGATGATCTTCTCTGTCCTCTGCATCTACATCCGGAGTATCTAT
CGAACCATTGAGCTGTCGCAGGGGTGGTCTGGCTACTTGATCACGCACGAACGGTACTTCATTGTCCTGGACGGC
ATTATGATGGTCTTAGCTGTGGGTGTGTTTAACATCTTCCATCCAGGATGGCTGCTACCTAAGAATGAGGTCAAG
CCATTCCACCGCGAGATCTACTCTCCTGACGGGGTAGCCAGTGGAATGGAGATGCGGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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