© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS72_1|g5142.t1 |
| Gene name | |
| Location | scaffold_034:170994..172553 |
| Strand | + |
| Gene length (bp) | 1559 |
| Transcript length (bp) | 1362 |
| Coding sequence length (bp) | 1362 |
| Protein length (aa) | 454 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01148 | CTP_transf_1 | Cytidylyltransferase family | 6.1E-81 | 72 | 398 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 70 | 89 | 19 |
| 2 | 93 | 115 | 22 |
| 3 | 128 | 150 | 22 |
| 4 | 165 | 186 | 21 |
| 5 | 198 | 215 | 17 |
| 6 | 225 | 247 | 22 |
| 7 | 260 | 282 | 22 |
| 8 | 333 | 355 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g5142.t1 MSKSRRNVRFPRRMSNSSEGRRLSISDASDVLSDPGSPAKDGSVTAPATIPEEKSEKPQLSDYEKKKQTFITRTI WTFVMIFGFFVAMFSGHIYIIGIVTAVQIISFKEVIAIANVPSKEKNLRFTKSLNWYFLATTMYFLYGESVIYYF KHVLLVDRVLLPLATHHRFISFTLYVMGFVFFVASLQKGQYRFQFTQFAWTHMALYLIVVQAHFVMNNILEGMIW FFLPASLVITNDIFAYVCGITFGRTQLIQLSPKKTVEGFLGAWICTIIFGYFMTNILMRYKYFICPVNDLGANVL TGLQCSPNPAFVPQPYHVPEWTGMHKTFHIEPIQFHILIFATFASLIAPFGGFFASGLKRTFKIKDFGESIPGHG GITDRMDCQFIMGFFSYMYYHSFIAVFKASVGDVIEIAINGLSVEEQLEVVRGLSKYLYNQGTVSETILDCINTE LRR* |
| Coding | >Ani_SJS72_1|g5142.t1 ATGTCCAAATCGCGTCGGAACGTCAGGTTCCCACGTCGGATGTCCAACTCCTCTGAAGGTCGGCGCTTGAGCATC TCTGATGCCAGCGATGTCCTCTCCGACCCCGGTAGCCCGGCCAAAGATGGCAGCGTCACCGCGCCTGCCACCATT CCCGAGGAGAAATCCGAGAAGCCCCAGTTGTCCGATTACGAAAAGAAGAAACAGACCTTTATTACACGTACGATA TGGACCTTTGTGATGATTTTCGGCTTCTTCGTTGCCATGTTTTCCGGCCACATTTACATCATCGGCATCGTTACC GCTGTCCAGATCATCTCGTTCAAGGAGGTTATCGCCATTGCCAATGTGCCCAGTAAGGAGAAAAACCTCCGCTTC ACCAAGTCGCTGAATTGGTACTTTCTGGCTACGACCATGTACTTCTTATACGGAGAGAGCGTCATCTACTACTTC AAGCATGTGCTTCTGGTGGATCGGGTGCTGCTGCCTCTAGCTACCCACCACCGGTTCATTAGCTTCACGCTTTAT GTTATGGGCTTCGTCTTCTTCGTCGCGTCCTTGCAGAAAGGACAGTACCGGTTCCAATTTACCCAGTTCGCTTGG ACGCATATGGCGCTCTACCTGATCGTCGTTCAAGCTCACTTTGTCATGAACAACATCCTGGAGGGCATGATCTGG TTCTTCCTTCCCGCCTCTCTCGTCATCACGAACGATATCTTTGCCTACGTCTGCGGTATTACCTTCGGTCGCACC CAGCTTATCCAGCTGTCCCCCAAGAAGACTGTCGAAGGGTTCCTTGGCGCGTGGATTTGCACCATCATCTTCGGC TACTTCATGACCAACATCCTGATGCGCTACAAGTACTTCATCTGCCCCGTCAATGATCTGGGTGCCAACGTCTTG ACGGGTCTTCAATGCTCGCCCAACCCGGCCTTCGTGCCCCAGCCCTACCATGTCCCGGAGTGGACCGGCATGCAC AAGACCTTCCATATTGAGCCTATCCAGTTCCACATTCTGATTTTCGCCACATTCGCTTCTCTTATCGCTCCCTTT GGCGGCTTCTTCGCCTCCGGTCTCAAGCGTACTTTCAAGATCAAGGACTTTGGCGAGTCGATCCCGGGTCACGGT GGCATCACTGACCGCATGGACTGCCAGTTCATCATGGGCTTCTTCTCGTACATGTACTACCACAGCTTCATCGCG GTGTTCAAGGCGAGCGTCGGAGATGTAATTGAGATCGCCATCAACGGTCTGTCGGTGGAGGAGCAACTCGAGGTC GTCCGGGGTCTGAGCAAGTACCTGTACAACCAGGGTACTGTCTCTGAAACAATCCTGGATTGTATCAACACCGAG CTCCGCCGTTAG |
| Transcript | >Ani_SJS72_1|g5142.t1 ATGTCCAAATCGCGTCGGAACGTCAGGTTCCCACGTCGGATGTCCAACTCCTCTGAAGGTCGGCGCTTGAGCATC TCTGATGCCAGCGATGTCCTCTCCGACCCCGGTAGCCCGGCCAAAGATGGCAGCGTCACCGCGCCTGCCACCATT CCCGAGGAGAAATCCGAGAAGCCCCAGTTGTCCGATTACGAAAAGAAGAAACAGACCTTTATTACACGTACGATA TGGACCTTTGTGATGATTTTCGGCTTCTTCGTTGCCATGTTTTCCGGCCACATTTACATCATCGGCATCGTTACC GCTGTCCAGATCATCTCGTTCAAGGAGGTTATCGCCATTGCCAATGTGCCCAGTAAGGAGAAAAACCTCCGCTTC ACCAAGTCGCTGAATTGGTACTTTCTGGCTACGACCATGTACTTCTTATACGGAGAGAGCGTCATCTACTACTTC AAGCATGTGCTTCTGGTGGATCGGGTGCTGCTGCCTCTAGCTACCCACCACCGGTTCATTAGCTTCACGCTTTAT GTTATGGGCTTCGTCTTCTTCGTCGCGTCCTTGCAGAAAGGACAGTACCGGTTCCAATTTACCCAGTTCGCTTGG ACGCATATGGCGCTCTACCTGATCGTCGTTCAAGCTCACTTTGTCATGAACAACATCCTGGAGGGCATGATCTGG TTCTTCCTTCCCGCCTCTCTCGTCATCACGAACGATATCTTTGCCTACGTCTGCGGTATTACCTTCGGTCGCACC CAGCTTATCCAGCTGTCCCCCAAGAAGACTGTCGAAGGGTTCCTTGGCGCGTGGATTTGCACCATCATCTTCGGC TACTTCATGACCAACATCCTGATGCGCTACAAGTACTTCATCTGCCCCGTCAATGATCTGGGTGCCAACGTCTTG ACGGGTCTTCAATGCTCGCCCAACCCGGCCTTCGTGCCCCAGCCCTACCATGTCCCGGAGTGGACCGGCATGCAC AAGACCTTCCATATTGAGCCTATCCAGTTCCACATTCTGATTTTCGCCACATTCGCTTCTCTTATCGCTCCCTTT GGCGGCTTCTTCGCCTCCGGTCTCAAGCGTACTTTCAAGATCAAGGACTTTGGCGAGTCGATCCCGGGTCACGGT GGCATCACTGACCGCATGGACTGCCAGTTCATCATGGGCTTCTTCTCGTACATGTACTACCACAGCTTCATCGCG GTGTTCAAGGCGAGCGTCGGAGATGTAATTGAGATCGCCATCAACGGTCTGTCGGTGGAGGAGCAACTCGAGGTC GTCCGGGGTCTGAGCAAGTACCTGTACAACCAGGGTACTGTCTCTGAAACAATCCTGGATTGTATCAACACCGAG CTCCGCCGTTAG |
| Gene | >Ani_SJS72_1|g5142.t1 ATGTCCAAATCGCGTCGGAACGTCAGGTTCCCACGTCGGATGTCCAACTCCTCTGAAGGTCGGCGCTTGAGCATC TCTGATGCCAGCGATGTCCTCTCCGACCCCGGTAGCCCGGCCAAAGATGGCAGCGTCACCGCGCCTGCCACCATT CCCGAGGAGGTGAGGAGCTGCGAGCTTTCCGGAAACCCCCGTGAAAGGTGTTTCTGTGTTGCAGACAAGGCTGAC ATGACGACCAGAAATCCGAGAAGCCCCAGTTGTCCGATTACGAAAAGAAGAAACAGACCTTTATTACACGTACGA TATGGACCTTTGTGATGATTTTCGGCTTCTTCGTTGCCATGTTTTCCGGCCACATTTACATCATCGGCATCGTTA CCGCTGTCCAGATCATCTCGTTCAAGGAGGTTATCGCCATTGCCAATGTGCCCAGTAAGGAGAAAAACCTCCGCT TCACCAAGTCGCTGAATTGGTACTTTCTGGCTACGACCATGTACTTCTTATACGGAGAGAGCGTCATCTACTACT TCAAGCATGTGCTTCTGGTGGATCGGGTGCTGCTGCCTCTAGCTACCCACCACCGGTTCATTAGCTTCACGCTTT ATGTTATGGGTCAGTCTATCCTCTTCGCGCGTAGACGCTTGCCTCTTTCTTGCTGACAGGTAATCCTAGGCTTCG TCTTCTTCGTCGCGTCCTTGCAGAAAGGACAGTACCGGTTCCAATTTACCCAGTTCGCTTGGACGCATATGGCGC TCTACCTGATCGTCGTTCAAGCTCACTTTGTCATGAACAACATCCTGGAGGGCATGATCTGGTTCTTCCTTCCCG CCTCTCTCGTCATCACGAACGATATCTTTGCCTACGTCTGCGGTATTACCTTCGGTCGCACCCAGCTTATCCAGC TGTCCCCCAAGAAGACTGTCGAAGGGTTCCTTGGCGCGTGGATTTGCACCATCATCTTCGGCTACTTCATGACCA ACATCCTGATGCGCTACAAGTACTTCATCTGCCCCGTCAATGATCTGGGTGCCAACGTCTTGACGGGTCTTCAAT GCTCGCCCAACCCGGCCTTCGTGCCCCAGCCCTACCATGTCCCGGAGTGGACCGGCATGCACAAGACCTTCCATA TTGAGCCTATCCAGTTCCACATTCTGATTTTCGCCACATTCGCTTCTCTTATCGCTCCCTTTGGCGGCTTCTTCG CCTCCGGTCTCAAGCGTACTTTCAAGATCAAGGACTTTGGCGAGTCGATCCCGGGTCACGGTGGCATCACTGACC GCATGGACTGCCAGTTCATCATGGGCTTCTTCTCGTACATGTACTACCACAGCTTCATCGCGGTGTTCAAGGCGA GCGTCGGAGATGTAATTGAGATCGCCATCAACGGTCTGTCGGTGGAGGAGCAACTCGAGGTCGTCCGGGGTCTGA GCAAGTACCTGTACAACCAGGGTACTGTCTCTGAAACAGTAAGCCAACCCTGTTCCCAGTCTACGCTTTGCGTCA TATCTAACTTTATCTACCTACAGATCCTGGATTGTATCAACACCGAGCTCCGCCGTTAG |