© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS72_1|g5108.t1 |
| Gene name | |
| Location | scaffold_034:61220..61908 |
| Strand | - |
| Gene length (bp) | 688 |
| Transcript length (bp) | 417 |
| Coding sequence length (bp) | 417 |
| Protein length (aa) | 139 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03311 | Cornichon | Cornichon protein | 6.5E-51 | 5 | 126 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016192 | vesicle-mediated transport | Yes |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 58 | 80 | 22 |
| 3 | 111 | 133 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g5108.t1 MSGEAWLYLLAVLINAVNLFLQVFFTIMYSDLECDYINPIDLCNRLNAYIVPEAAVHAFLTFLFIINGYWVAIVL NLPLLAFNAKKIYENQHLLDATEIFRKLNVHKKESFIKLGFHLLMFFFYLYSMIVALIRDESH* |
| Coding | >Ani_SJS72_1|g5108.t1 ATGTCCGGTGAAGCCTGGCTCTATCTGCTGGCGGTGTTGATTAACGCCGTCAACCTGTTCCTGCAGGTCTTCTTT ACTATCATGTACAGCGATCTGGAATGTGACTACATCAACCCCATTGATCTGTGCAACCGCCTCAACGCCTACATT GTTCCCGAAGCCGCCGTTCACGCTTTCTTGACCTTCCTGTTCATCATCAATGGCTACTGGGTCGCCATCGTCCTG AACCTGCCTCTGTTGGCGTTCAATGCTAAGAAGATCTACGAGAACCAGCACCTCCTGGATGCGACCGAGATCTTC CGCAAGCTGAACGTCCACAAGAAGGAATCTTTCATCAAGCTGGGCTTCCACCTCCTGATGTTCTTCTTCTACCTC TACAGCATGATCGTCGCCTTGATCCGCGACGAGTCTCACTGA |
| Transcript | >Ani_SJS72_1|g5108.t1 ATGTCCGGTGAAGCCTGGCTCTATCTGCTGGCGGTGTTGATTAACGCCGTCAACCTGTTCCTGCAGGTCTTCTTT ACTATCATGTACAGCGATCTGGAATGTGACTACATCAACCCCATTGATCTGTGCAACCGCCTCAACGCCTACATT GTTCCCGAAGCCGCCGTTCACGCTTTCTTGACCTTCCTGTTCATCATCAATGGCTACTGGGTCGCCATCGTCCTG AACCTGCCTCTGTTGGCGTTCAATGCTAAGAAGATCTACGAGAACCAGCACCTCCTGGATGCGACCGAGATCTTC CGCAAGCTGAACGTCCACAAGAAGGAATCTTTCATCAAGCTGGGCTTCCACCTCCTGATGTTCTTCTTCTACCTC TACAGCATGATCGTCGCCTTGATCCGCGACGAGTCTCACTGA |
| Gene | >Ani_SJS72_1|g5108.t1 ATGTCCGGTGAAGCCTGGCTCTATCTGCTGGCGGTGTTGATTAACGCCGTCAACCTGTTCCTGCAGGTCTTCTTT ACTATCATGTACAGCGATCTGGAATGGTATGATCTGGCTCTATCCTCCCTCTTGTCTCGCCGATTTCTGTCGTGT GCGTGGACGAGCTCTTGTGAGCCGCATGGGAGCTCGCCATGGATTGCGACAGCGTGATGGAACCCAACCAGCTAA CGAACCCGGTTCGCTCCCGCAGTGACTACATCAACCCCATTGATCTGTGCAACCGCCTCAACGCCTACATTGTTC CCGAAGCCGCCGTTCACGCTTTCTTGACCTTCCTGTTCATCATCAATGGCTACTGGGTCGCCATCGTCCTGAACC TGCCTCTGTTGGCGTTCAATGCTAAGAAGTAATGCTGTCTTTTCCAGCTCCGCCATGCTGCAGCCCAACTAACAC AACCGCCCTTTCTGCAGGATCTACGAGAACCAGCACCTCCTGGATGCGACCGAGATCTTCCGCAAGCTGAACGTC CACAAGAAGGTTAGACTGCACTGTCCCAATCCCGCTACCAGGGCGGACCGACCGCTGACGCAAACTGCAGGAATC TTTCATCAAGCTGGGCTTCCACCTCCTGATGTTCTTCTTCTACCTCTACAGCATGATCGTCGCCTTGATCCGCGA CGAGTCTCACTGA |