Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ani_SJS72_1\|g4767.t1
Gene name
Location	scaffold_030:299978..300677
Strand	+
Gene length (bp)	699
Transcript length (bp)	546
Coding sequence length (bp)	546
Protein length (aa)	182

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF02466	Tim17	Tim17/Tim22/Tim23/Pmp24 family	1.1E-41	45	167

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	50	72	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ani_SJS72_1\|g4767.t1 MNPASMTTPMGGLGGAPGAAGPNMQGMSEQEQAMVKMMYSAMESCPMKTVMAGTMGFGLGGVFGLFMASMSYDST FTPQGKAIADLPWKEQVRRGFKDMGQRSWSSAKNFGIVGALYSGTECCIEGLRAKNDLTNSVAAGCITGGILGAK AGPQAAAAGCAGFAAFSAAIDAYMRMPEKDD*
Coding	>Ani_SJS72_1\|g4767.t1 ATGAACCCCGCTAGCATGACCACGCCGATGGGCGGCCTCGGCGGCGCCCCCGGCGCAGCAGGACCCAACATGCAG GGCATGAGCGAGCAAGAACAAGCCATGGTGAAGATGATGTACTCCGCCATGGAATCCTGCCCCATGAAGACCGTC ATGGCCGGAACAATGGGTTTCGGTCTGGGTGGTGTCTTCGGTTTGTTTATGGCTAGCATGTCCTACGACTCCACC TTCACCCCCCAAGGCAAAGCGATCGCCGACCTCCCCTGGAAAGAGCAAGTACGTCGCGGCTTCAAAGACATGGGC CAGCGGTCGTGGTCCAGCGCCAAGAACTTCGGTATCGTGGGTGCGCTGTACTCTGGCACGGAGTGCTGTATTGAG GGACTGAGGGCCAAGAATGATCTGACGAATTCGGTGGCCGCGGGTTGCATTACTGGTGGTATTTTGGGTGCGAAG GCCGGCCCCCAGGCTGCTGCTGCCGGGTGTGCGGGCTTTGCGGCGTTTAGTGCGGCTATTGATGCTTATATGAGG ATGCCGGAGAAGGATGATTAG
Transcript	>Ani_SJS72_1\|g4767.t1 ATGAACCCCGCTAGCATGACCACGCCGATGGGCGGCCTCGGCGGCGCCCCCGGCGCAGCAGGACCCAACATGCAG GGCATGAGCGAGCAAGAACAAGCCATGGTGAAGATGATGTACTCCGCCATGGAATCCTGCCCCATGAAGACCGTC ATGGCCGGAACAATGGGTTTCGGTCTGGGTGGTGTCTTCGGTTTGTTTATGGCTAGCATGTCCTACGACTCCACC TTCACCCCCCAAGGCAAAGCGATCGCCGACCTCCCCTGGAAAGAGCAAGTACGTCGCGGCTTCAAAGACATGGGC CAGCGGTCGTGGTCCAGCGCCAAGAACTTCGGTATCGTGGGTGCGCTGTACTCTGGCACGGAGTGCTGTATTGAG GGACTGAGGGCCAAGAATGATCTGACGAATTCGGTGGCCGCGGGTTGCATTACTGGTGGTATTTTGGGTGCGAAG GCCGGCCCCCAGGCTGCTGCTGCCGGGTGTGCGGGCTTTGCGGCGTTTAGTGCGGCTATTGATGCTTATATGAGG ATGCCGGAGAAGGATGATTAG
Gene	>Ani_SJS72_1\|g4767.t1 ATGAACCCCGCTAGCATGACCACGCCGATGGGCGGCCTCGGCGGCGCCCCCGGCGCAGCAGGACCCAACATGCAG GGCATGAGCGAGCAAGAACAAGCCATGGTGAAGATGGTACATACATACCCATCCCCTATACACTCTTCCTCTCAC ACCCAAAGAATCAAGCTAACACACCGATCAAAACAATAGATGTACTCCGCCATGGAATCCTGCCCCATGAAGACC GTCATGGCCGGAACAATGGGTTTCGGTCTGGGTGGTGTCTTCGGTTTGTTTATGGCTAGCGTATGCCTCCCCCCC CTCTTCCCAAATACCCTCCTTAAACTCAATACTGATATCCGAGTCTTGGTATATATATAGATGTCCTACGACTCC ACCTTCACCCCCCAAGGCAAAGCGATCGCCGACCTCCCCTGGAAAGAGCAAGTACGTCGCGGCTTCAAAGACATG GGCCAGCGGTCGTGGTCCAGCGCCAAGAACTTCGGTATCGTGGGTGCGCTGTACTCTGGCACGGAGTGCTGTATT GAGGGACTGAGGGCCAAGAATGATCTGACGAATTCGGTGGCCGCGGGTTGCATTACTGGTGGTATTTTGGGTGCG AAGGCCGGCCCCCAGGCTGCTGCTGCCGGGTGTGCGGGCTTTGCGGCGTTTAGTGCGGCTATTGATGCTTATATG AGGATGCCGGAGAAGGATGATTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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