© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS72_1|g454.t1 |
| Gene name | |
| Location | scaffold_002:393625..394772 |
| Strand | - |
| Gene length (bp) | 1147 |
| Transcript length (bp) | 972 |
| Coding sequence length (bp) | 972 |
| Protein length (aa) | 324 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04479 | RTA1 | RTA1 like protein | 1.3E-71 | 70 | 288 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 28 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 34 | 56 | 22 |
| 2 | 63 | 85 | 22 |
| 3 | 95 | 117 | 22 |
| 4 | 138 | 160 | 22 |
| 5 | 175 | 197 | 22 |
| 6 | 221 | 243 | 22 |
| 7 | 263 | 285 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS72_1|g454.t1 MSNSTTNSTSLDPSDYCTLSICPLSDAYVNYVPSLPGNIFYLAVFSALLIAQLILGIRYRTWGYLTGLFGGLLLE IIGYAGRIQMHYNPFKFNPYLEYLICLTIAPALLSASIYICLTRIIIIYGAEISRLKPKTYTYLFVFCDLVSLIL QAAGGAITSTADADQADLAQTGIDIMIAGLASQVVSLVLFMGLCADFAYRVWKNPGKLNGDFRMREVRRSMVWKG FLGGLSLATVTIFIRSVFRVAELKGGFHSRLANDEVDFMVLEGAMIVLATLALTVLHPGFCFDGLWKQTKWSRVK AGDVDMAFLDAEGKVRGVGSLDS* |
| Coding | >Ani_SJS72_1|g454.t1 ATGTCAAACTCAACCACCAACAGCACATCCCTCGACCCCTCCGACTACTGCACCCTCTCCATCTGTCCCCTCTCC GACGCCTACGTCAACTACGTCCCCTCACTCCCCGGCAACATCTTCTACCTGGCCGTTTTCTCCGCCCTCCTCATC GCCCAACTCATCCTAGGAATCCGCTACCGCACCTGGGGCTACCTAACCGGCCTATTCGGCGGTCTCCTCCTTGAG ATAATCGGCTACGCAGGACGTATTCAGATGCACTATAACCCGTTCAAATTCAATCCTTACCTTGAATACCTAATT TGTCTAACCATCGCCCCCGCCCTCCTCTCCGCCTCCATCTACATCTGCCTAACCCGGATCATAATAATCTACGGC GCAGAAATCTCCCGCCTAAAACCAAAAACATACACCTACCTCTTCGTCTTCTGCGACCTCGTCTCTCTAATTCTA CAAGCCGCCGGCGGCGCAATCACCTCCACTGCGGACGCAGACCAAGCGGATCTCGCCCAAACAGGGATAGATATC ATGATTGCGGGGCTCGCCAGCCAGGTTGTTTCCCTGGTGTTGTTTATGGGTCTGTGTGCGGATTTCGCCTACCGG GTATGGAAGAATCCCGGGAAGTTGAATGGTGATTTTAGGATGCGGGAGGTGAGGAGGAGTATGGTGTGGAAGGGG TTTTTGGGTGGATTATCCCTCGCAACAGTGACTATCTTCATCCGATCCGTGTTCCGAGTTGCGGAGTTGAAAGGC GGATTCCATAGTAGACTCGCCAACGATGAGGTGGATTTCATGGTATTGGAGGGGGCGATGATTGTGCTGGCGACG TTGGCGTTGACGGTGTTGCATCCGGGATTTTGCTTTGATGGGTTATGGAAGCAGACGAAGTGGTCGAGGGTGAAG GCCGGGGATGTGGATATGGCGTTTTTGGATGCGGAGGGGAAGGTGAGGGGGGTGGGGTCGTTGGATAGTTAG |
| Transcript | >Ani_SJS72_1|g454.t1 ATGTCAAACTCAACCACCAACAGCACATCCCTCGACCCCTCCGACTACTGCACCCTCTCCATCTGTCCCCTCTCC GACGCCTACGTCAACTACGTCCCCTCACTCCCCGGCAACATCTTCTACCTGGCCGTTTTCTCCGCCCTCCTCATC GCCCAACTCATCCTAGGAATCCGCTACCGCACCTGGGGCTACCTAACCGGCCTATTCGGCGGTCTCCTCCTTGAG ATAATCGGCTACGCAGGACGTATTCAGATGCACTATAACCCGTTCAAATTCAATCCTTACCTTGAATACCTAATT TGTCTAACCATCGCCCCCGCCCTCCTCTCCGCCTCCATCTACATCTGCCTAACCCGGATCATAATAATCTACGGC GCAGAAATCTCCCGCCTAAAACCAAAAACATACACCTACCTCTTCGTCTTCTGCGACCTCGTCTCTCTAATTCTA CAAGCCGCCGGCGGCGCAATCACCTCCACTGCGGACGCAGACCAAGCGGATCTCGCCCAAACAGGGATAGATATC ATGATTGCGGGGCTCGCCAGCCAGGTTGTTTCCCTGGTGTTGTTTATGGGTCTGTGTGCGGATTTCGCCTACCGG GTATGGAAGAATCCCGGGAAGTTGAATGGTGATTTTAGGATGCGGGAGGTGAGGAGGAGTATGGTGTGGAAGGGG TTTTTGGGTGGATTATCCCTCGCAACAGTGACTATCTTCATCCGATCCGTGTTCCGAGTTGCGGAGTTGAAAGGC GGATTCCATAGTAGACTCGCCAACGATGAGGTGGATTTCATGGTATTGGAGGGGGCGATGATTGTGCTGGCGACG TTGGCGTTGACGGTGTTGCATCCGGGATTTTGCTTTGATGGGTTATGGAAGCAGACGAAGTGGTCGAGGGTGAAG GCCGGGGATGTGGATATGGCGTTTTTGGATGCGGAGGGGAAGGTGAGGGGGGTGGGGTCGTTGGATAGTTAG |
| Gene | >Ani_SJS72_1|g454.t1 ATGTCAAACTCAACCACCAACAGCACATCCCTCGACCCCTCCGACTACTGCACCCTCTCCATCTGTCCCCTCTCC GACGCCTACGTCAACTACGTCCCCTCACTCCCCGGCAACATCTTCTACCTGGCCGTTTTCTCCGCCCTCCTCATC GCCCAACTCATCCTAGGAATCCGCTACCGCACCTGGGGCTACCTAACCGGCCTATTCGGCGGTCTCCTCCTTGAG ATAATCGGCTACGCAGGACGTATTCAGATGCACTATAACCCGTTCAAATTCAATCCTTACCTTGAGTATGCCCTT CCCCATTTCCCCCCAACTTCCATACCCTTTTCCAATTCCTCCTTTTCACATTACAAACAAAGATCTAATAAGAAA TCTATGAAACAGATACCTAATTTGTCTAACCATCGCCCCCGCCCTCCTCTCCGCCTCCATCTACATCTGCCTAAC CCGGATCATAATAATCTACGGCGCAGAAATCTCCCGCCTAAAACCAAAAACATACACCTACCTCTTCGTCTTCTG CGACCTCGTCTCTCTAATTCTACAAGCCGCCGGCGGCGCAATCACCTCCACTGCGGACGCAGACCAAGCGGATCT CGCCCAAACAGGGATAGATATCATGATTGCGGGGCTCGCCAGCCAGGTTGTTTCCCTGGTGTTGTTTATGGGTCT GTGTGCGGATTTCGCCTACCGGGTATGGAAGAATCCCGGGAAGTTGAATGGTGATTTTAGGATGCGGGAGGTGAG GAGGAGTATGGTGTGGAAGGGGTTTTTGGGTGGTGAGCATACCCCTTTCTTTCTGGGATTTATTTGTGTGTGGTG TGGGTTTATGGGCTAAACGCACTATGTGTGTGTAGGATTATCCCTCGCAACAGTGACTATCTTCATCCGATCCGT GTTCCGAGTTGCGGAGTTGAAAGGCGGATTCCATAGTAGACTCGCCAACGATGAGGTGGATTTCATGGTATTGGA GGGGGCGATGATTGTGCTGGCGACGTTGGCGTTGACGGTGTTGCATCCGGGATTTTGCTTTGATGGGTTATGGAA GCAGACGAAGTGGTCGAGGGTGAAGGCCGGGGATGTGGATATGGCGTTTTTGGATGCGGAGGGGAAGGTGAGGGG GGTGGGGTCGTTGGATAGTTAG |