Protein ID | Ani_SJS72_1|g454.t1 |
Gene name | |
Location | scaffold_002:393625..394772 |
Strand | - |
Gene length (bp) | 1147 |
Transcript length (bp) | 972 |
Coding sequence length (bp) | 972 |
Protein length (aa) | 324 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04479 | RTA1 | RTA1 like protein | 1.3E-71 | 70 | 288 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016021 | integral component of membrane | Yes |
GO:0031224 | intrinsic component of membrane | No |
GO:0110165 | cellular anatomical entity | No |
GO:0005575 | cellular_component | No |
Domain # | Start | End | Length |
---|---|---|---|
1 | 34 | 56 | 22 |
2 | 63 | 85 | 22 |
3 | 95 | 117 | 22 |
4 | 138 | 160 | 22 |
5 | 175 | 197 | 22 |
6 | 221 | 243 | 22 |
7 | 263 | 285 | 22 |
Orthofinder run ID | 3 |
Orthogroup | 1482 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS72_1|g454.t1 MSNSTTNSTSLDPSDYCTLSICPLSDAYVNYVPSLPGNIFYLAVFSALLIAQLILGIRYRTWGYLTGLFGGLLLE IIGYAGRIQMHYNPFKFNPYLEYLICLTIAPALLSASIYICLTRIIIIYGAEISRLKPKTYTYLFVFCDLVSLIL QAAGGAITSTADADQADLAQTGIDIMIAGLASQVVSLVLFMGLCADFAYRVWKNPGKLNGDFRMREVRRSMVWKG FLGGLSLATVTIFIRSVFRVAELKGGFHSRLANDEVDFMVLEGAMIVLATLALTVLHPGFCFDGLWKQTKWSRVK AGDVDMAFLDAEGKVRGVGSLDS* |
Coding | >Ani_SJS72_1|g454.t1 ATGTCAAACTCAACCACCAACAGCACATCCCTCGACCCCTCCGACTACTGCACCCTCTCCATCTGTCCCCTCTCC GACGCCTACGTCAACTACGTCCCCTCACTCCCCGGCAACATCTTCTACCTGGCCGTTTTCTCCGCCCTCCTCATC GCCCAACTCATCCTAGGAATCCGCTACCGCACCTGGGGCTACCTAACCGGCCTATTCGGCGGTCTCCTCCTTGAG ATAATCGGCTACGCAGGACGTATTCAGATGCACTATAACCCGTTCAAATTCAATCCTTACCTTGAATACCTAATT TGTCTAACCATCGCCCCCGCCCTCCTCTCCGCCTCCATCTACATCTGCCTAACCCGGATCATAATAATCTACGGC GCAGAAATCTCCCGCCTAAAACCAAAAACATACACCTACCTCTTCGTCTTCTGCGACCTCGTCTCTCTAATTCTA CAAGCCGCCGGCGGCGCAATCACCTCCACTGCGGACGCAGACCAAGCGGATCTCGCCCAAACAGGGATAGATATC ATGATTGCGGGGCTCGCCAGCCAGGTTGTTTCCCTGGTGTTGTTTATGGGTCTGTGTGCGGATTTCGCCTACCGG GTATGGAAGAATCCCGGGAAGTTGAATGGTGATTTTAGGATGCGGGAGGTGAGGAGGAGTATGGTGTGGAAGGGG TTTTTGGGTGGATTATCCCTCGCAACAGTGACTATCTTCATCCGATCCGTGTTCCGAGTTGCGGAGTTGAAAGGC GGATTCCATAGTAGACTCGCCAACGATGAGGTGGATTTCATGGTATTGGAGGGGGCGATGATTGTGCTGGCGACG TTGGCGTTGACGGTGTTGCATCCGGGATTTTGCTTTGATGGGTTATGGAAGCAGACGAAGTGGTCGAGGGTGAAG GCCGGGGATGTGGATATGGCGTTTTTGGATGCGGAGGGGAAGGTGAGGGGGGTGGGGTCGTTGGATAGTTAG |
Transcript | >Ani_SJS72_1|g454.t1 ATGTCAAACTCAACCACCAACAGCACATCCCTCGACCCCTCCGACTACTGCACCCTCTCCATCTGTCCCCTCTCC GACGCCTACGTCAACTACGTCCCCTCACTCCCCGGCAACATCTTCTACCTGGCCGTTTTCTCCGCCCTCCTCATC GCCCAACTCATCCTAGGAATCCGCTACCGCACCTGGGGCTACCTAACCGGCCTATTCGGCGGTCTCCTCCTTGAG ATAATCGGCTACGCAGGACGTATTCAGATGCACTATAACCCGTTCAAATTCAATCCTTACCTTGAATACCTAATT TGTCTAACCATCGCCCCCGCCCTCCTCTCCGCCTCCATCTACATCTGCCTAACCCGGATCATAATAATCTACGGC GCAGAAATCTCCCGCCTAAAACCAAAAACATACACCTACCTCTTCGTCTTCTGCGACCTCGTCTCTCTAATTCTA CAAGCCGCCGGCGGCGCAATCACCTCCACTGCGGACGCAGACCAAGCGGATCTCGCCCAAACAGGGATAGATATC ATGATTGCGGGGCTCGCCAGCCAGGTTGTTTCCCTGGTGTTGTTTATGGGTCTGTGTGCGGATTTCGCCTACCGG GTATGGAAGAATCCCGGGAAGTTGAATGGTGATTTTAGGATGCGGGAGGTGAGGAGGAGTATGGTGTGGAAGGGG TTTTTGGGTGGATTATCCCTCGCAACAGTGACTATCTTCATCCGATCCGTGTTCCGAGTTGCGGAGTTGAAAGGC GGATTCCATAGTAGACTCGCCAACGATGAGGTGGATTTCATGGTATTGGAGGGGGCGATGATTGTGCTGGCGACG TTGGCGTTGACGGTGTTGCATCCGGGATTTTGCTTTGATGGGTTATGGAAGCAGACGAAGTGGTCGAGGGTGAAG GCCGGGGATGTGGATATGGCGTTTTTGGATGCGGAGGGGAAGGTGAGGGGGGTGGGGTCGTTGGATAGTTAG |
Gene | >Ani_SJS72_1|g454.t1 ATGTCAAACTCAACCACCAACAGCACATCCCTCGACCCCTCCGACTACTGCACCCTCTCCATCTGTCCCCTCTCC GACGCCTACGTCAACTACGTCCCCTCACTCCCCGGCAACATCTTCTACCTGGCCGTTTTCTCCGCCCTCCTCATC GCCCAACTCATCCTAGGAATCCGCTACCGCACCTGGGGCTACCTAACCGGCCTATTCGGCGGTCTCCTCCTTGAG ATAATCGGCTACGCAGGACGTATTCAGATGCACTATAACCCGTTCAAATTCAATCCTTACCTTGAGTATGCCCTT CCCCATTTCCCCCCAACTTCCATACCCTTTTCCAATTCCTCCTTTTCACATTACAAACAAAGATCTAATAAGAAA TCTATGAAACAGATACCTAATTTGTCTAACCATCGCCCCCGCCCTCCTCTCCGCCTCCATCTACATCTGCCTAAC CCGGATCATAATAATCTACGGCGCAGAAATCTCCCGCCTAAAACCAAAAACATACACCTACCTCTTCGTCTTCTG CGACCTCGTCTCTCTAATTCTACAAGCCGCCGGCGGCGCAATCACCTCCACTGCGGACGCAGACCAAGCGGATCT CGCCCAAACAGGGATAGATATCATGATTGCGGGGCTCGCCAGCCAGGTTGTTTCCCTGGTGTTGTTTATGGGTCT GTGTGCGGATTTCGCCTACCGGGTATGGAAGAATCCCGGGAAGTTGAATGGTGATTTTAGGATGCGGGAGGTGAG GAGGAGTATGGTGTGGAAGGGGTTTTTGGGTGGTGAGCATACCCCTTTCTTTCTGGGATTTATTTGTGTGTGGTG TGGGTTTATGGGCTAAACGCACTATGTGTGTGTAGGATTATCCCTCGCAACAGTGACTATCTTCATCCGATCCGT GTTCCGAGTTGCGGAGTTGAAAGGCGGATTCCATAGTAGACTCGCCAACGATGAGGTGGATTTCATGGTATTGGA GGGGGCGATGATTGTGCTGGCGACGTTGGCGTTGACGGTGTTGCATCCGGGATTTTGCTTTGATGGGTTATGGAA GCAGACGAAGTGGTCGAGGGTGAAGGCCGGGGATGTGGATATGGCGTTTTTGGATGCGGAGGGGAAGGTGAGGGG GGTGGGGTCGTTGGATAGTTAG |