Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS72_1|g454.t1
Gene name
Locationscaffold_002:393625..394772
Strand-
Gene length (bp)1147
Transcript length (bp)972
Coding sequence length (bp)972
Protein length (aa) 324

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04479 RTA1 RTA1 like protein 1.3E-71 70 288

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 28 0.5

Transmembrane Domains

Domain # Start End Length
1 34 56 22
2 63 85 22
3 95 117 22
4 138 160 22
5 175 197 22
6 221 243 22
7 263 285 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS72_1|g454.t1
MSNSTTNSTSLDPSDYCTLSICPLSDAYVNYVPSLPGNIFYLAVFSALLIAQLILGIRYRTWGYLTGLFGGLLLE
IIGYAGRIQMHYNPFKFNPYLEYLICLTIAPALLSASIYICLTRIIIIYGAEISRLKPKTYTYLFVFCDLVSLIL
QAAGGAITSTADADQADLAQTGIDIMIAGLASQVVSLVLFMGLCADFAYRVWKNPGKLNGDFRMREVRRSMVWKG
FLGGLSLATVTIFIRSVFRVAELKGGFHSRLANDEVDFMVLEGAMIVLATLALTVLHPGFCFDGLWKQTKWSRVK
AGDVDMAFLDAEGKVRGVGSLDS*
Coding >Ani_SJS72_1|g454.t1
ATGTCAAACTCAACCACCAACAGCACATCCCTCGACCCCTCCGACTACTGCACCCTCTCCATCTGTCCCCTCTCC
GACGCCTACGTCAACTACGTCCCCTCACTCCCCGGCAACATCTTCTACCTGGCCGTTTTCTCCGCCCTCCTCATC
GCCCAACTCATCCTAGGAATCCGCTACCGCACCTGGGGCTACCTAACCGGCCTATTCGGCGGTCTCCTCCTTGAG
ATAATCGGCTACGCAGGACGTATTCAGATGCACTATAACCCGTTCAAATTCAATCCTTACCTTGAATACCTAATT
TGTCTAACCATCGCCCCCGCCCTCCTCTCCGCCTCCATCTACATCTGCCTAACCCGGATCATAATAATCTACGGC
GCAGAAATCTCCCGCCTAAAACCAAAAACATACACCTACCTCTTCGTCTTCTGCGACCTCGTCTCTCTAATTCTA
CAAGCCGCCGGCGGCGCAATCACCTCCACTGCGGACGCAGACCAAGCGGATCTCGCCCAAACAGGGATAGATATC
ATGATTGCGGGGCTCGCCAGCCAGGTTGTTTCCCTGGTGTTGTTTATGGGTCTGTGTGCGGATTTCGCCTACCGG
GTATGGAAGAATCCCGGGAAGTTGAATGGTGATTTTAGGATGCGGGAGGTGAGGAGGAGTATGGTGTGGAAGGGG
TTTTTGGGTGGATTATCCCTCGCAACAGTGACTATCTTCATCCGATCCGTGTTCCGAGTTGCGGAGTTGAAAGGC
GGATTCCATAGTAGACTCGCCAACGATGAGGTGGATTTCATGGTATTGGAGGGGGCGATGATTGTGCTGGCGACG
TTGGCGTTGACGGTGTTGCATCCGGGATTTTGCTTTGATGGGTTATGGAAGCAGACGAAGTGGTCGAGGGTGAAG
GCCGGGGATGTGGATATGGCGTTTTTGGATGCGGAGGGGAAGGTGAGGGGGGTGGGGTCGTTGGATAGTTAG
Transcript >Ani_SJS72_1|g454.t1
ATGTCAAACTCAACCACCAACAGCACATCCCTCGACCCCTCCGACTACTGCACCCTCTCCATCTGTCCCCTCTCC
GACGCCTACGTCAACTACGTCCCCTCACTCCCCGGCAACATCTTCTACCTGGCCGTTTTCTCCGCCCTCCTCATC
GCCCAACTCATCCTAGGAATCCGCTACCGCACCTGGGGCTACCTAACCGGCCTATTCGGCGGTCTCCTCCTTGAG
ATAATCGGCTACGCAGGACGTATTCAGATGCACTATAACCCGTTCAAATTCAATCCTTACCTTGAATACCTAATT
TGTCTAACCATCGCCCCCGCCCTCCTCTCCGCCTCCATCTACATCTGCCTAACCCGGATCATAATAATCTACGGC
GCAGAAATCTCCCGCCTAAAACCAAAAACATACACCTACCTCTTCGTCTTCTGCGACCTCGTCTCTCTAATTCTA
CAAGCCGCCGGCGGCGCAATCACCTCCACTGCGGACGCAGACCAAGCGGATCTCGCCCAAACAGGGATAGATATC
ATGATTGCGGGGCTCGCCAGCCAGGTTGTTTCCCTGGTGTTGTTTATGGGTCTGTGTGCGGATTTCGCCTACCGG
GTATGGAAGAATCCCGGGAAGTTGAATGGTGATTTTAGGATGCGGGAGGTGAGGAGGAGTATGGTGTGGAAGGGG
TTTTTGGGTGGATTATCCCTCGCAACAGTGACTATCTTCATCCGATCCGTGTTCCGAGTTGCGGAGTTGAAAGGC
GGATTCCATAGTAGACTCGCCAACGATGAGGTGGATTTCATGGTATTGGAGGGGGCGATGATTGTGCTGGCGACG
TTGGCGTTGACGGTGTTGCATCCGGGATTTTGCTTTGATGGGTTATGGAAGCAGACGAAGTGGTCGAGGGTGAAG
GCCGGGGATGTGGATATGGCGTTTTTGGATGCGGAGGGGAAGGTGAGGGGGGTGGGGTCGTTGGATAGTTAG
Gene >Ani_SJS72_1|g454.t1
ATGTCAAACTCAACCACCAACAGCACATCCCTCGACCCCTCCGACTACTGCACCCTCTCCATCTGTCCCCTCTCC
GACGCCTACGTCAACTACGTCCCCTCACTCCCCGGCAACATCTTCTACCTGGCCGTTTTCTCCGCCCTCCTCATC
GCCCAACTCATCCTAGGAATCCGCTACCGCACCTGGGGCTACCTAACCGGCCTATTCGGCGGTCTCCTCCTTGAG
ATAATCGGCTACGCAGGACGTATTCAGATGCACTATAACCCGTTCAAATTCAATCCTTACCTTGAGTATGCCCTT
CCCCATTTCCCCCCAACTTCCATACCCTTTTCCAATTCCTCCTTTTCACATTACAAACAAAGATCTAATAAGAAA
TCTATGAAACAGATACCTAATTTGTCTAACCATCGCCCCCGCCCTCCTCTCCGCCTCCATCTACATCTGCCTAAC
CCGGATCATAATAATCTACGGCGCAGAAATCTCCCGCCTAAAACCAAAAACATACACCTACCTCTTCGTCTTCTG
CGACCTCGTCTCTCTAATTCTACAAGCCGCCGGCGGCGCAATCACCTCCACTGCGGACGCAGACCAAGCGGATCT
CGCCCAAACAGGGATAGATATCATGATTGCGGGGCTCGCCAGCCAGGTTGTTTCCCTGGTGTTGTTTATGGGTCT
GTGTGCGGATTTCGCCTACCGGGTATGGAAGAATCCCGGGAAGTTGAATGGTGATTTTAGGATGCGGGAGGTGAG
GAGGAGTATGGTGTGGAAGGGGTTTTTGGGTGGTGAGCATACCCCTTTCTTTCTGGGATTTATTTGTGTGTGGTG
TGGGTTTATGGGCTAAACGCACTATGTGTGTGTAGGATTATCCCTCGCAACAGTGACTATCTTCATCCGATCCGT
GTTCCGAGTTGCGGAGTTGAAAGGCGGATTCCATAGTAGACTCGCCAACGATGAGGTGGATTTCATGGTATTGGA
GGGGGCGATGATTGTGCTGGCGACGTTGGCGTTGACGGTGTTGCATCCGGGATTTTGCTTTGATGGGTTATGGAA
GCAGACGAAGTGGTCGAGGGTGAAGGCCGGGGATGTGGATATGGCGTTTTTGGATGCGGAGGGGAAGGTGAGGGG
GGTGGGGTCGTTGGATAGTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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